scholarly journals Multilabel Classification of Membrane Protein in Human by Decision Tree (DT) Approach

2018 ◽  
Vol 11 (1) ◽  
pp. 113-121 ◽  
Author(s):  
Nijil Raj N ◽  
T. Mahalekshmi
Keyword(s):  
Membrane Protein ◽  
Decision Tree ◽  
Protein Function ◽  
Cellular Processes ◽  
Semantic Scene ◽  
Class Labels ◽  
Essential Set ◽  
Type Classification ◽  
Better Than

Multi-label classification methods are important in various fields,such as protein type,protein function, semantic scene classification and music categorization . In multi-label classification, each sample can be associated with a set of class labels. In protein type classification, one of the major types of protein is membrane protein. The Membrane proteins are performing different cellular processes and important functions, which are based on the protein types. Each membrane protein have different rolls at the same time. In this study we proposes membrane protein type classification using Decision Tree (DT) classification algorithm. The DT classifies a membrane protein into six types . An essential set of features are extracted from the membrane protein dataset S1 which are used for the proposed method,and it was revealed an accuracy of 69.81%, whereas existing methods network based and shortest path revealed an accuracy of 66.78%,54.97%.The accuracy got in the existing methods are not for the full set of protein in dataset S1, but it is achieved after removal of few unannotated protein. Both accuracy wise and complexity wise, the proposed method seems to be better than the existing method

scholarly journals A Novel Categorical Data Attribute Split Technique in Decision Tree Learning

2020 ◽  
Vol 9 (1) ◽  
pp. 1607-1612
Keyword(s):  
Decision Tree ◽  
Categorical Data ◽  
Ease Of Use ◽  
Decision Tree Learning ◽  
Current Node ◽  
Categorical Attributes ◽  
Categorical Attribute ◽  
A New Technique ◽  
Class Labels ◽  
Better Than

A new technique is proposed for splitting categorical data during the process of decision tree learning. This technique is based on the class probability representations and manipulations of the class labels corresponding to the distinct values of categorical attributes. For each categorical attribute aggregate similarity in terms of class probabilities is computed and then based on the highest aggregated similarity measure the best attribute is selected and then the data in the current node of the decision tree is divided into the number of sub sets equal to the number of distinct values of the best categorical split attribute. Many experiments are conducted using this proposed method and the results have shown that the proposed technique is better than many other competitive methods in terms of efficiency, ease of use, understanding, and output results and it will be useful in many modern applications.

Classifiers for Ground-Based Cloud Images Using Texture Features

2014 ◽  
Vol 931-932 ◽  
pp. 1392-1396 ◽  
Author(s):  
Thitinan Kliangsuwan ◽  
Apichat Heednacram
Keyword(s):  
Nearest Neighbor ◽  
Texture Features ◽  
Correct Classification ◽  
Ann Model ◽  
Cloud Type ◽  
Artificial Neural Network Ann ◽  
Sky Conditions ◽  
Type Classification ◽  
Better Than

The classification of ground-based cloud images has received more attention recently. The result of this work applies to the analysis of climate change; a correct classification is, therefore, important. In this paper, we used 18 texture features to distinguish 7 sky conditions. The important parameters of two classifiers are fine-tuned in the experiment, namely, k-nearest neighbor (k-NN) and artificial neural network (ANN). The performances of the two classifications were compared. Advantages and limitations of both classifiers were discussed. Our result revealed that the k-NN model performed at 72.99% accuracy while the ANN model has higher performance at 86.93% accuracy. We showed that our result is better than previous studies. Finally, seven most effective texture features are recommended to be used in the field of cloud type classification.

scholarly journals Decision Tree C 4.5 Algorithm for Classification of Poor Family Scholarship Recipients

2021 ◽  
Vol 1125 (1) ◽  
pp. 012048
Author(s):  
Y Kustiyahningsih ◽  
B K Khotimah ◽  
D R Anamisa ◽  
M Yusuf ◽  
T Rahayu ◽  
...  
Keyword(s):  
Decision Tree ◽  
Poor Family ◽  
Scholarship Recipients

scholarly journals NLOS Multipath Classification of GNSS Signal Correlation Output Using Machine Learning

Sensors ◽  
2021 ◽  
Vol 21 (7) ◽  
pp. 2503
Author(s):  
Taro Suzuki ◽  
Yoshiharu Amano
Keyword(s):  
Machine Learning ◽  
Satellite System ◽  
Training Data ◽  
Support Vector ◽  
Positioning Errors ◽  
Automated Method ◽  
Global Navigation Satellite ◽  
Better Than ◽  
Signal Correlation

This paper proposes a method for detecting non-line-of-sight (NLOS) multipath, which causes large positioning errors in a global navigation satellite system (GNSS). We use GNSS signal correlation output, which is the most primitive GNSS signal processing output, to detect NLOS multipath based on machine learning. The shape of the multi-correlator outputs is distorted due to the NLOS multipath. The features of the shape of the multi-correlator are used to discriminate the NLOS multipath. We implement two supervised learning methods, a support vector machine (SVM) and a neural network (NN), and compare their performance. In addition, we also propose an automated method of collecting training data for LOS and NLOS signals of machine learning. The evaluation of the proposed NLOS detection method in an urban environment confirmed that NN was better than SVM, and 97.7% of NLOS signals were correctly discriminated.

scholarly journals UAV Image Multi-Labeling with Data-Efficient Transformers

2021 ◽  
Vol 11 (9) ◽  
pp. 3974
Author(s):  
Laila Bashmal ◽  
Yakoub Bazi ◽  
Mohamad Mahmoud Al Rahhal ◽  
Haikel Alhichri ◽  
Naif Al Ajlan
Keyword(s):  
Data Augmentation ◽  
Feature Representation ◽  
Aerial Image ◽  
Remote Sensing Images ◽  
Training Set ◽  
Proposed Model ◽  
Class Labels ◽  
Using Data ◽  
Uav Image

In this paper, we present an approach for the multi-label classification of remote sensing images based on data-efficient transformers. During the training phase, we generated a second view for each image from the training set using data augmentation. Then, both the image and its augmented version were reshaped into a sequence of flattened patches and then fed to the transformer encoder. The latter extracts a compact feature representation from each image with the help of a self-attention mechanism, which can handle the global dependencies between different regions of the high-resolution aerial image. On the top of the encoder, we mounted two classifiers, a token and a distiller classifier. During training, we minimized a global loss consisting of two terms, each corresponding to one of the two classifiers. In the test phase, we considered the average of the two classifiers as the final class labels. Experiments on two datasets acquired over the cities of Trento and Civezzano with a ground resolution of two-centimeter demonstrated the effectiveness of the proposed model.

scholarly journals Deep Learning Methods for Classification of Certain Abnormalities in Echocardiography

Electronics ◽  
2021 ◽  
Vol 10 (4) ◽  
pp. 495
Author(s):  
Imayanmosha Wahlang ◽  
Arnab Kumar Maji ◽  
Goutam Saha ◽  
Prasun Chakrabarti ◽  
Michal Jasinski ◽  
...  
Keyword(s):  
Deep Learning ◽  
Short Term Memory ◽  
Support Vector ◽  
Variational Autoencoder ◽  
Different Types ◽  
Static Images ◽  
Long Short Term Memory ◽  
2D And 3D ◽  
Better Than

This article experiments with deep learning methodologies in echocardiogram (echo), a promising and vigorously researched technique in the preponderance field. This paper involves two different kinds of classification in the echo. Firstly, classification into normal (absence of abnormalities) or abnormal (presence of abnormalities) has been done, using 2D echo images, 3D Doppler images, and videographic images. Secondly, based on different types of regurgitation, namely, Mitral Regurgitation (MR), Aortic Regurgitation (AR), Tricuspid Regurgitation (TR), and a combination of the three types of regurgitation are classified using videographic echo images. Two deep-learning methodologies are used for these purposes, a Recurrent Neural Network (RNN) based methodology (Long Short Term Memory (LSTM)) and an Autoencoder based methodology (Variational AutoEncoder (VAE)). The use of videographic images distinguished this work from the existing work using SVM (Support Vector Machine) and also application of deep-learning methodologies is the first of many in this particular field. It was found that deep-learning methodologies perform better than SVM methodology in normal or abnormal classification. Overall, VAE performs better in 2D and 3D Doppler images (static images) while LSTM performs better in the case of videographic images.

scholarly journals 174 A comparison of machine learning algorithms in the classification of beef steers finished in feedlot

2020 ◽  
Vol 98 (Supplement_4) ◽  
pp. 126-127
Author(s):  
Lucas S Lopes ◽  
Christine F Baes ◽  
Dan Tulpan ◽  
Luis Artur Loyola Chardulo ◽  
Otavio Machado Neto ◽  
...  
Keyword(s):  
Machine Learning ◽  
Decision Tree ◽  
Learning Algorithms ◽  
Machine Learning Algorithms ◽  
Final Decision ◽  
Relevant Parameter ◽  
Good Prediction ◽  
Quality Traits ◽  
C4.5 Decision Tree

Abstract The aim of this project is to compare some of the state-of-the-art machine learning algorithms on the classification of steers finished in feedlots based on performance, carcass and meat quality traits. The precise classification of animals allows for fast, real-time decision making in animal food industry, such as culling or retention of herd animals. Beef production presents high variability in its numerous carcass and beef quality traits. Machine learning algorithms and software provide an opportunity to evaluate the interactions between traits to better classify animals. Four different treatment levels of wet distiller’s grain were applied to 97 Angus-Nellore animals and used as features for the classification problem. The C4.5 decision tree, Naïve Bayes (NB), Random Forest (RF) and Multilayer Perceptron (MLP) Artificial Neural Network algorithms were used to predict and classify the animals based on recorded traits measurements, which include initial and final weights, sheer force and meat color. The top performing classifier was the C4.5 decision tree algorithm with a classification accuracy of 96.90%, while the RF, the MLP and NB classifiers had accuracies of 55.67%, 39.17% and 29.89% respectively. We observed that the final decision tree model constructed with C4.5 selected only the dry matter intake (DMI) feature as a differentiator. When DMI was removed, no other feature or combination of features was sufficiently strong to provide good prediction accuracies for any of the classifiers. We plan to investigate in a follow-up study on a significantly larger sample size, the reasons behind DMI being a more relevant parameter than the other measurements.

scholarly journals Convolutional Neural Network-Based Artificial Intelligence for Classification of Protein Localization Patterns

Biomolecules ◽  
2021 ◽  
Vol 11 (2) ◽  
pp. 264
Author(s):  
Kaisa Liimatainen ◽  
Riku Huttunen ◽  
Leena Latonen ◽  
Pekka Ruusuvuori
Keyword(s):  
Neural Network ◽  
Artificial Intelligence ◽  
Convolutional Neural Network ◽  
High Throughput ◽  
Protein Function ◽  
Protein Localization ◽  
Convolutional Network ◽  
High Throughput Analysis ◽  
Fully Convolutional Network

Identifying localization of proteins and their specific subpopulations associated with certain cellular compartments is crucial for understanding protein function and interactions with other macromolecules. Fluorescence microscopy is a powerful method to assess protein localizations, with increasing demand of automated high throughput analysis methods to supplement the technical advancements in high throughput imaging. Here, we study the applicability of deep neural network-based artificial intelligence in classification of protein localization in 13 cellular subcompartments. We use deep learning-based on convolutional neural network and fully convolutional network with similar architectures for the classification task, aiming at achieving accurate classification, but importantly, also comparison of the networks. Our results show that both types of convolutional neural networks perform well in protein localization classification tasks for major cellular organelles. Yet, in this study, the fully convolutional network outperforms the convolutional neural network in classification of images with multiple simultaneous protein localizations. We find that the fully convolutional network, using output visualizing the identified localizations, is a very useful tool for systematic protein localization assessment.

scholarly journals Classification of diabetes disease using decision tree algorithm (C4.5)

2021 ◽  
Vol 1869 (1) ◽  
pp. 012082
Author(s):  
B A C Permana ◽  
R Ahmad ◽  
H Bahtiar ◽  
A Sudianto ◽  
I Gunawan
Keyword(s):  
Decision Tree ◽  
Decision Tree Algorithm ◽  
Tree Algorithm
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