scholarly journals QTL mapping of PEG-induced drought tolerance at the early seedling stage in sesame using whole genome re-sequencing

PLoS ONE ◽  
2021 ◽  
Vol 16 (2) ◽  
pp. e0247681
Author(s):  
Junchao Liang ◽  
Jian Sun ◽  
Yanying Ye ◽  
Xiaowen Yan ◽  
Tingxian Yan ◽  
...  
Keyword(s):  
Water Stress ◽  
Drought Tolerance ◽  
Qtl Mapping ◽  
Stress Condition ◽  
Seedling Stage ◽  
Whole Genome ◽  
Drought Tolerant ◽  
Water Stress Condition ◽  
Early Seedling ◽  
Stable Qtls

Improvement in sesame drought tolerance at seedling stage is important for yield stability. Genetic approaches combing with conventional breeding is the most effective way to develop drought-tolerant cultivars. In this study, three traits and their relative values, including seedling weight (SW), shoot length (SL) and root length (RL), were evaluated under control and osmotic conditions in a recombinant inbred line (RIL) population derived from cross of Zhushanbai and Jinhuangma. Significant variation and high broad sense heritability were observed for all traits except SW under stress condition in the population. With this population, a high-density linkage map with 1354 bin markers was constructed through whole genome re-sequencing (WGS) strategy. Quantitative trait loci (QTL) mapping was performed for all the traits. A total of 34 QTLs were detected on 10 chromosomes. Among them, 13 stable QTLs were revealed in two independent experiments, eight of them were associated with traits under water stress condition. One region on chromosome 12 related to RL under osmotic condition and relative RL had the highest LOD value and explained the largest phenotypic variation among all the QTLs detected under water stress condition. These findings will provide new genetic resources for molecular improvement of drought tolerance and candidate gene identification in sesame.

scholarly journals Screening of Pearl Millet Genotypes Suitable for Drought Tolerance at Early Seedling Stage

2021 ◽  
Author(s):  
R.C. Meena ◽  
Supriya Ambawat ◽  
C. Tara Satyavathi ◽  
Moola Ram ◽  
Vikas Khandelwal ◽  
...  
Keyword(s):  
Water Stress ◽  
Drought Tolerance ◽  
Pearl Millet ◽  
Pennisetum Glaucum ◽  
Climatic Factors ◽  
Crop Improvement ◽  
Seedling Stage ◽  
Drought Tolerant ◽  
Early Seedling ◽  
Improvement Programs

Background: Pearl millet [Pennisetum glaucum (L.) Br.] is the most widely grown staple food of majority of poor and small land holders in Asia and Africa. It is also consumed as feed and fodder for livestock. It is the sixth most important cereal crop in the world next to maize, rice wheat, barley and sorghum. The temperature is one of the key climatic factors and has profound effect on the growth and development of the pearl millet. It can only be managed through developing hybrid varieties which can tolerate high temperature during germination and early seedling stages.The present study aimed to identify drought tolerant genotypes of pearl millet at seedling stage. Methods: This experiment was carried out at Mandor during kharif 2018 with five selected pearl millet advanced hybrids MH 2192, MH 2224, MH 2228, MH 2354 and MH 2359 along with three checks RHB 177, MPMH 17 and 86M86 which were tested under polyethylene glycol (PEG) (5% and 10%) induced osmotic stress. Various physiological parameters were recorded 15 days after sowing and statistical analysis made using Windostat software. Result: The results revealed that shoot length, seedling dry weight, relative water content, membrane stability index and chlorophyll content decreased significantly with PEG induced water stress in all the hybrids while root length and catalase activity increased significantly under water stress. Among 5 hybrids, two hybrids viz. MH 2359 and MH 2354 performed better and found to be superior under PEG induced water stress. Thus, various drought tolerance indices may further be studied for these two hybrids and can be used in development of drought tolerant genotypes which may prove helpful for crop improvement programs of pearl millet.

scholarly journals Competition between drought-tolerant upland rice cultivars and weeds under water stress condition

2013 ◽  
Vol 31 (2) ◽  
pp. 291-302 ◽  
Author(s):  
F.B. Cerqueira ◽  
E.A.L. Erasmo ◽  
J.I.C. Silva ◽  
T.V. Nunes ◽  
G.P. Carvalho ◽  
...  
Keyword(s):  
Water Stress ◽  
Leaf Area ◽  
Stress Condition ◽  
Upland Rice ◽  
Total Concentration ◽  
Dry Weight ◽  
Rice Cultivars ◽  
Drought Tolerant ◽  
Water Stress Condition ◽  
Water Conditions

The objective of this study was to evaluate the competitiveness of two cultivars of upland rice drought-tolerant, cultured in coexistence with weed S. verticillata, under conditions of absence and presence of water stress. The experiment was conducted in a greenhouse at the Experimental Station of the Universidade Federal de Tocantins, Gurupi-TO Campus. The experimental design was completely randomized in a factorial 2 x 2 x 4 with four replications. The treatments consisted of two rice cultivars under two water conditions and four densities. At 57 days after emergence, were evaluated in rice cultivars and weed S. verticillata leaf area, dry weight of roots and shoots and total concentration and depth of roots. Was also evaluated in rice cultivars, plant height and number of tillers. Water stress caused a reduction in leaf area, the concentration of roots and vegetative components of dry matter (APDM, and MSR MST) of rice cultivars and Jatoba Catetão and weed S. verticillata. The competition established by the presence of the weed provided reduction of all vegetative components (MSPA, and MSR MST) of cultivars and Jatoba Catetão. It also decreased the number of tillers, the concentration of roots and leaf area. At the highest level of weed competition with rice cultivars, a greater decrease in vegetative components and leaf area of culture, regardless of water conditions.

scholarly journals Evaluation of seedling growth of rice (Oryza sativa L.) genotypes under water stress and non-stress conditions

2020 ◽  
Vol 5 (2) ◽  
pp. 174-178
Author(s):  
Shreejana K. C. ◽  
Kabita Kumari Shah ◽  
Niru Baidhya ◽  
Prashamsa Neupane ◽  
Surakshya Pokhrel ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Water Stress ◽  
Drought Tolerance ◽  
Stress Condition ◽  
Oryza Sativa L ◽  
Rice Variety ◽  
Research Work ◽  
Higher Plant ◽  
Water Stress Condition ◽  
Number Of Leaves

Rice (Oryza sativa L.) is a species of crops which is highly sensitive to drought. The sensitivity to water stress varies from genotypes to genotypes of rice. An experiment was performed to compare twenty-five different rice genotypes for drought tolerance in the seedling stage at Gokuleshwor Agriculture and Animal Science College, Baitadi Nepal from July to August 2018. The genotypes were tested under two conditions viz., water stress and non-water stress. The research work was carried out in a completely random design (CRD) with three replications. The results exhibited the height of seedling, length & breadth of leaf, number of leaves/plant decreased, and number of leaves shedding increased under water stress condition. Clustering was done by the method of average linkage, and genotypes were categorized into five clusters. The genotype, namely Radha 11 grouped in Cluster-V had higher plant height, bigger length & breadth of leaf, maximum number of leaves/plant and minimum number of leaf shedding. Thus, this genotype showed the best performance for morphological traits under water stress condition. Therefore, this genotype Radha 11 can be utilized further for developing rice variety with drought-tolerance.

Construction of a high density genetic map and QTL mapping of PEG-induced drought tolerance at the early seedling stage in sesame using whole genome re-sequencing

2020 ◽  
Author(s):  
Junchao Liang ◽  
Yanying Ye ◽  
Xiaowen Yan ◽  
Tingxian Yan ◽  
Yueliang Rao ◽  
...  
Keyword(s):  
Drought Tolerance ◽  
Qtl Mapping ◽  
Genetic Map ◽  
Phenotypic Variation ◽  
Root Length ◽  
High Density ◽  
Seedling Stage ◽  
Whole Genome ◽  
Major Qtls ◽  
Ril Population

Abstract BackgroundImprovement in sesame (Sesamum indicum L.) drought tolerance at seedling stage is important for yield stability. Genetic approaches combing with conventional breeding is the most effective way to develop drought-tolerant cultivars. So far, only a few studies have been reported to reveal gene/ quantitative trait loci (QTL) controlling drought tolerance in sesame. To identify the genomic regions associated with drought tolerance, we constructed a high-density genetic map using a recombinant inbred line (RIL) population through whole genome re-sequencing (WGRS) technique. QTLs contributing to three seedling traits were identified under both non-stress and water stress conditions.ResultsThree drought tolerance related traits and their relative values (the ratio of value under stress to value under control condition), including seedling weight (SW), shoot length (SL) and root length (RL), were evaluated under control and PEG-induced osmotic conditions at seedling stage in a RIL population derived from cross of Zhushanbai (ZSB) and Jinhuangma (JHM). Significant variation and high broad sense heritability were observed for all traits except SW under stress condition in the population. With this population, a high-density linkage map with 1354 bin markers was constructed through WGRS strategy. Composite interval mapping analysis was performed for all the traits as well as their relative phenotypic data. A total of 34 QTLs were detected for these traits under both conditions and their relative values, and 13 stable QTLs associated with seven traits were revealed in two independent experiments, explaining on average, 4.95-16.26% of phenotypic variation for each QTL. Four of them contributed more than 10% of phenotypic variation. One region on chromosome 12 contained two major QTLs related to RL under osmotic condition and relative RL. Seven candidate genes underlying major QTLs for drought tolerance were identified according to gene descriptions and variations between parents.ConclusionThe current study reports the first QTL mapping of drought tolerance related traits through a RIL population and first QTL detection of root related trait (root length) in sesame. These findings will provide new genetic resources for molecular improvement of drought tolerance and candidate gene identification in sesame.

scholarly journals Construction of a High Density Genetic Map and QTL Mapping of PEG-Induced Drought Tolerance at Seedling Stage in Sesame Using Whole Genome Re-Sequencing

2020 ◽  
Author(s):  
Junchao Liang ◽  
Yanying Ye ◽  
Xiaowen Yan ◽  
Tingxian Yan ◽  
Yueliang Rao ◽  
...  
Keyword(s):  
Drought Tolerance ◽  
Qtl Mapping ◽  
Genetic Map ◽  
Phenotypic Variation ◽  
Root Length ◽  
High Density ◽  
Seedling Stage ◽  
Whole Genome ◽  
Phenotypic Data ◽  
Ril Population

Abstract BackgroundImprovement in sesame (Sesamum indicum L.) drought tolerance at seedling stage is important for yield stability. Genetic approaches combing with conventional breeding is the most effective way to develop drought-tolerant cultivars. So far, very few studies have been reported to reveal gene/ quantitative trait loci (QTL) controlling drought tolerance in sesame. To identify the genomic regions associated with drought tolerance, we constructed a high-density genetic map using a recombinant inbred line (RIL) population through whole genome re-sequencing (WGRS) technique. QTLs contributing to three seedling traits were identified under both non-stress and water stress conditions.ResultsThree drought tolerance related traits and their relative values (the ratio of value under stress to value under control condition), including seedling weight (SW), shoot length (SL) and root length (RL), were evaluated under control and PEG-induced osmotic conditions at seedling stage in a RIL population derived from cross of Zhushanbai (ZSB) and Jinhuangma (JHM). Significant variation and high broad sense heritability were observed for all traits except SW under stress condition in the population. With this population, a high-density linkage map with 1354 bin markers was constructed through WGRS strategy. Composite interval mapping analysis was performed for all the traits as well as their relative phenotypic data. A total of 34 QTLs were detected for these three traits under both conditions and their relative values, and 13 stable QTLs associated with seven traits could be revealed in two independent experiments, explaining on average, 4.95-16.26% of phenotypic variation for each QTL. Four of them contributed more than 10% of phenotypic variation. Root length related QTLs were first identified in sesame. One region on chromosome 12 contained two major QTLs related to RL under osmotic condition and relative RL. ConclusionThe current study reports the first QTL mapping of drought tolerance related traits through a RIL population and first QTL detection of root related trait (root length) in sesame. These findings will provide new genetic resources for molecular improvement of drought tolerance and candidate gene identification in sesame.

scholarly journals Genetic Diversity of Selected Rice Genotypes under Water Stress Conditions

Plants ◽  
2020 ◽  
Vol 10 (1) ◽  
pp. 27
Author(s):  
Mahmoud M. Gaballah ◽  
Azza M. Metwally ◽  
Milan Skalicky ◽  
Mohamed M. Hassan ◽  
Marian Brestic ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Water Stress ◽  
Drought Stress ◽  
Drought Tolerance ◽  
Ssr Markers ◽  
Similarity Index ◽  
Stress Conditions ◽  
Yield Potential ◽  
Drought Tolerant ◽  
Rice Genotypes

Drought is the most challenging abiotic stress for rice production in the world. Thus, developing new rice genotype tolerance to water scarcity is one of the best strategies to achieve and maximize high yield potential with water savings. The study aims to characterize 16 rice genotypes for grain and agronomic parameters under normal and drought stress conditions, and genetic differentiation, by determining specific DNA markers related to drought tolerance using Simple Sequence Repeats (SSR) markers and grouping cultivars, establishing their genetic relationship for different traits. The experiment was conducted under irrigated (normal) and water stress conditions. Mean squares due to genotype × environment interactions were highly significant for major traits. For the number of panicles/plants, the genotypes Giza179, IET1444, Hybrid1, and Hybrid2 showed the maximum mean values. The required sterility percentage values were produced by genotypes IET1444, Giza178, Hybrid2, and Giza179, while, Sakha101, Giza179, Hybrid1, and Hybrid2 achieved the highest values of grain yield/plant. The genotypes Giza178, Giza179, Hybrid1, and Hybrid2, produced maximum values for water use efficiency. The effective number of alleles per locus ranged from 1.20 alleles to 3.0 alleles with an average of 1.28 alleles, and the He values for all SSR markers used varied from 0.94 to 1.00 with an average of 0.98. The polymorphic information content (PIC) values for the SSR were varied from 0.83 to 0.99, with an average of 0.95 along with a highly significant correlation between PIC values and the number of amplified alleles detected per locus. The highest similarity coefficient between Giza181 and Giza182 (Indica type) was observed and are susceptible to drought stress. High similarity percentage between the genotypes (japonica type; Sakha104 with Sakha102 and Sakha106 (0.45), Sakha101 with Sakha102 and Sakha106 (0.40), Sakha105 with Hybrid1 (0.40), Hybrid1 with Giza178 (0.40) and GZ1368-S-5-4 with Giza181 (0.40)) was also observed, which are also susceptible to drought stress. All genotypes are grouped into two major clusters in the dendrogram at 66% similarity based on Jaccard’s similarity index. The first cluster (A) was divided into two minor groups A1 and A2, in which A1 had two groups A1-1 and A1-2, containing drought-tolerant genotypes like IET1444, GZ1386-S-5-4 and Hybrid1. On the other hand, the A1-2 cluster divided into A1-2-1 containing Hybrid2 genotype and A1-2-2 containing Giza179 and Giza178 at coefficient 0.91, showing moderate tolerance to drought stress. The genotypes GZ1368-S-5-4, IET1444, Giza 178, and Giza179, could be included as appropriate materials for developing a drought-tolerant variety breeding program. Genetic diversity to grow new rice cultivars that combine drought tolerance with high grain yields is essential to maintaining food security.

scholarly journals Effects of composted oil palm bunch wastes and chemical fertilizer on growth of oil palm seedling under water stress condition

Agro-Science ◽  
2015 ◽  
Vol 12 (1) ◽  
pp. 17
Author(s):  
S Ovie ◽  
GU Nnaji ◽  
PO Oviasogie ◽  
PE Osayande ◽  
P Irhemu
Keyword(s):  
Water Stress ◽  
Oil Palm ◽  
Stress Condition ◽  
Chemical Fertilizer ◽  
Water Stress Condition ◽  
Palm Bunch

scholarly journals Selection of drought-tolerant rice varieties from the rice variety bank of Can Tho university

2019 ◽  
Vol 02 ◽  
pp. 65-70
Author(s):  
Tin Q. Huynh
Keyword(s):  
Water Stress ◽  
Drought Tolerance ◽  
Rice Variety ◽  
Mekong Delta ◽  
Rice Cultivation ◽  
Rice Varieties ◽  
Wetting And Drying ◽  
Drought Tolerant ◽  
Susceptible Control ◽  
Rice Improvement

Drought has been a big problem and damaged seriously to rice cultivation and production in Vietnam and the Mekong Delta region; evaluating drought tolerance of rice is a major objective for the rice improvement programmes in Can Tho University. Fifty-two collected rice varieties including resistant and susceptible control varieties were screened for water stress under the artificial drought condition. Marker RM223 was used to identify the drought tolerance genotypes for some selected varieties with good and moderate tolerant scores. After 30 days of water stress, the results were 6 varieties of good tolerant, 8 varieties of moderate tolerance, 36 varieties of moderately susceptible and 2 varieties of susceptible to drought. Analyses of PCR showed that 10 varieties expressed the similar bands with the resistant control variety. Four varieties (LH8, MTL812, Lua Canh and VB1) with good tolerant to drought were recommended to use for genetic materials of rice breeding program and applying in alternative wetting and drying irrigation technique for rice cultivation.

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