scholarly journals Elucidating the effect of biofertilizers on bacterial diversity in maize rhizosphere soil

PLoS ONE ◽  
2021 ◽  
Vol 16 (4) ◽  
pp. e0249834
Author(s):  
Junhong Wang ◽  
Lei Liu ◽  
Xiaoyin Gao ◽  
Jianxia Hao ◽  
Mengliang Wang
Keyword(s):  
Bacterial Community ◽  
Rhizosphere Soil ◽  
Special Functions ◽  
Bacterial Species ◽  
Chemical Properties ◽  
Community Diversity ◽  
Available Phosphorus ◽  
Bacterial Strains ◽  
Bacterial Phyla ◽  
Maize Rhizosphere

This study was conducted to investigate the effect of biofertilizers on the structure and diversity of the rhizosphere bacterial community of maize. Different biofertilizers were applied to maize. The physical and chemical properties of rhizosphere soil samples were analyzed and the rhizosphere bacteria were analyzed by 16S amplicon sequencing. The results showed that treatment with Bacillus licheniformis and B. amyloliquefaciens as biofertilizers increased the soil organic matter (SOM), total nitrogen, total phosphorus (TP), available phosphorus (AP), and available potassium (AK) contents, indicating that the plant growth-promoting rhizobacteria in the biofertilizers might help the host plant to produce root exudates that, in return, recruit beneficial communities due to available sugars, amino acids, organic acids, vitamins, and polymers. The rhizosphere of maize treated with B. subtilis biofertilizer had the highest diversity and richness. However, the rhizosphere treated with the combined bacterial strains had the lowest diversity and richness, which might be due to the directional increase of the abundance of some bacteria with special functions, but the decrease of the overall bacterial community diversity in the soil. The dominant bacterial phyla were Proteobacteria (32.2%–34.6%), Acidobacteria (15.0%–21.0%), Actinobacteria (13.1%–17.2%), and Gemmatimonadetes (9.0%–10.8%), and the dominant bacterial species were Aciditerrimonas ferrireducens JCM 15389 (4.3%–5.2%), Gemmatimonas aurantiaca (3.2%–4.1%), and Pyrinomonas methylaliphatogenes (2.1%–4.8%). The significantly enriched bacterial functions were associated with amino acid metabolism, sugar metabolism, and energy metabolism pathways. The results of a redundancy analysis showed that SOM, TP, and AK were the main factors affecting the microbial community structure in the maize rhizosphere. In conclusion, the application of biofertilizers increased the diversity and richness of the bacterial community in the maize rhizosphere soil. However, combined strain treatment was failed and not an ideal strategy due to the lowest abundance and diversity.

scholarly journals Effects of biochar on waterlogging and the associated change in micro-ecological environment of maize rhizosphere soil in saline-alkali land

BioResources ◽  
2020 ◽  
Vol 15 (4) ◽  
pp. 9303-9323
Author(s):  
Zhihui Wang ◽  
Dawei Yin ◽  
Hongyi Wang ◽  
Changjiang Zhao ◽  
Zuotong Li
Keyword(s):  
Bacterial Community ◽  
Soil Respiration ◽  
Bulk Density ◽  
Relative Abundance ◽  
Rhizosphere Soil ◽  
Chemical Properties ◽  
Northern China ◽  
Available Phosphorus ◽  
Available Nitrogen ◽  
Maize Rhizosphere

Saline-alkali soils of northern China are prone to waterlogging after degradation caused by overuse. The effects of biochar (40 t/ha) were tested relative to the physico-chemical properties of maize rhizosphere soil, the composition and function of the soil bacterial community, and its response to sudden waterlogging. Biochar treatment decreased the pH and bulk density of the soil and increased soil organic carbon (SOC), available nitrogen (AN), and available phosphorus (AP). The relative abundance of bacteria (Proteobacteria, Actinobacteria, Bacteroidetes, and Nitrospirae) also increased, along with the activities of soil enzymes, such as dehydrogenase, β-glucosidase, and alkaline phosphomonoester. The response of soil microbial enzymes to biochar addition was induced by changes in the soil physical properties (pH, soil moisture content, and soil respiration (BR)). Changes in the bacterial community structure were driven by soil nutrients and physical characteristics (AN, AP, SOC, pH, moisture, water-stable aggregate stability rate, BR, and bulk density). After waterlogging, soil with biochar demonstrated high water permeability and improved soil respiration. The relative abundance of soil bacteria and enzyme activities remained higher in the biochar plot than in the no-biochar plot. Biochar maintained the growth and vitality of maize roots in unfavorable environmental conditions, thus ensuring high yields.

scholarly journals Comparison of Bacterial Communities in Soil Samples with and without Tomato Bacterial Wilt Caused by Ralstonia solanacearum Species Complex

2020 ◽  
Author(s):  
Ying Zhang ◽  
Anna Hu ◽  
Jianuan Zhou ◽  
Wenfei Zhang ◽  
Peng Li
Keyword(s):  
Community Structure ◽  
Bacterial Community ◽  
Bacterial Wilt ◽  
Ralstonia Solanacearum ◽  
Diversity Index ◽  
Chemical Properties ◽  
Interaction Network ◽  
Wilt Disease ◽  
Community Diversity ◽  
Bacterial Strains

Abstract BackgroundRalstonia solanacearum is one of the most notorious soil-born phytopathogen that causes a severe wilt disease with deadly effects on many economically important crops. The microbial community structure and interactions are commonly changed between bacterial wilt susceptible soil and healthy soil. Here, the bacterial community structure, correlation analysis with soil chemical properties, interaction network of healthy soil (HS, nearly no disease happened at recent three years) and diseased soil (DS, suffered heavy bacterial wilt disease) were analyzed.ResultsCompared to DS, a higher bacterial community diversity index was found in HS, and the relative abundance of main genera Bacillus, Gaiellales, Roseiflexus, Gemmatimonadaceae, Nocardioides and Anaerolineacear reached significant level. Redundancy analysis on genus level indicated that rapid available phosphate played key role on bacterial community distribution difference, and showed negative correlation with the other four chemical properties. Interaction network analysis further demonstrated that the higher genus community diversity and more extensive interactions were existed in HS network and formed stable network, and the genera Mycobacterium, Cyanobacteria and Rhodobiaceae should be the key components that sustain the network stably. Seven clusters of orthologous groups reached significant level difference between HS and DS. Moreover, 55 bacterial strains with distinct antagonistic activities to R. solancearum were isolated and identified. ConclusionsIn summary, our findings indicate that the bacterial diversity and interaction network changed between the HS and DS samples, which are also provide a good research basis for future biological control to the bacterial wilt.

scholarly journals Silicon Application Modulates the Growth, Rhizosphere Soil Characteristics, and Bacterial Community Structure in Sugarcane

2021 ◽  
Vol 12 ◽  
Author(s):  
Quanqing Deng ◽  
Taobing Yu ◽  
Zhen Zeng ◽  
Umair Ashraf ◽  
Qihan Shi ◽  
...  
Keyword(s):  
Community Structure ◽  
Bacterial Community ◽  
Enzyme Activities ◽  
Bacterial Community Structure ◽  
Rhizosphere Soil ◽  
Chemical Properties ◽  
Soil Enzyme ◽  
Community Diversity ◽  
Soil Enzyme Activities ◽  
And Chemical Properties

Silicon (Si) deficiency, caused by acidic soil and rainy climate, is a major constraint for sugarcane production in southern China. Si application generally improves sugarcane growth; however, there are few studies on the relationships between enhanced plant growth, changes in rhizosphere soil, and bacterial communities. A field experiment was conducted to measure sugarcane agronomic traits, plant nutrient contents, rhizosphere soil enzyme activities and chemical properties, and the rhizosphere bacterial community diversity and structure of three predominant sugarcane varieties under two Si treatments, i.e., 0 and 200 kg of silicon dioxide (SiO2) ha−1 regarded as Si0 and Si200, respectively. Results showed that Si application substantially improved the sugarcane stalk fresh weight and Si, phosphorus (P), and potassium (K) contents comparing to Si0, and had an obvious impact on rhizosphere soil pH, available Si (ASi), available P (AP), available K (AK), total phosphorus (TP), and the activity of acid phosphatase. Furthermore, the relative abundances of Proteobacteria showed a remarkable increase in Si200, which may be the dominant group in sugarcane growth under Si application. Interestingly, the AP was noticed as a major factor that caused bacterial community structure differences between the two Si treatments according to canonical correspondence analysis (CCA). In addition, the association network analysis indicated that Si application enriched the rhizosphere bacterial network, which could be beneficial to sugarcane growth. Overall, appropriate Si application, i.e., 200 kg SiO2 ha−1 promoted sugarcane growth, changed rhizosphere soil enzyme activities and chemical properties, and bacterial community structures.

scholarly journals Bacterial Composition and Diversity Associated with Rhizosphere of the Chinese Medicinal Herb Dendrobium

2020 ◽  
Author(s):  
Yingdan Yuan ◽  
Mengting Zu ◽  
Lei Liu ◽  
Xiaomei Song
Keyword(s):  
Microbial Community ◽  
Environmental Factor ◽  
Bacterial Communities ◽  
Soil Microorganisms ◽  
Rhizosphere Soil ◽  
Available Phosphorus ◽  
Maturity Stage ◽  
Bacterial Phyla ◽  
Rhizosphere Microorganisms ◽  
Rhizosphere Microbial Community

Abstract Background: Dendrobium is a precious herbal belongs to Orchid and widely used as health care traditional Chinese medicine in Asia. Although orchids are mycorrhizal plants, most researches still focus on endophytes, and there is still large unknown in rhizosphere microorganisms. In order to investigate the rhizosphere microbial community of different Dendrobium species during the maturity stage, we used high-throughput sequencing to analyze microbial community in rhizosphere soil during maturity stage of three kinds of Dendrobium species.Results: In our study, a total of 240,320 sequences and 11,179 OTUs were obtained from these three Dendrobium species. According to the analysis of OTU annotation results, different Dendrobium rhizosphere soil bacteria include 2 kingdoms, 63 phyla, 72 classes, 159 orders, 309 families, 850 genera and 663 species. Among all sequences, the dominant bacterial phyla (relative abundance > 1%) were Proteobacteria, Actinobacteria, Bacteroidetes, Acidobacteria, Firmicutes, Verrucomicrobia, Planctomycetes, Chloroflexi, Gemmatimonadetes. We analyzed the environmental factors of the growth of Dendrobium and found that the environmental factor that affects the rhizosphere soil microorganisms of Dendrobium is the soil factor. Among them, soil factors most closely related to the influence of Dendrobium rhizosphere soil microorganisms include total nitrogen, available phosphorus, ammonium nitrogen and pH value.Conclusions: We found that the rhizosphere bacterial communities of the three kinds of Dendrobium have significant differences, and the main species of rhizosphere microorganisms of Dendrobium are concentrated in the Proteobacteria, Actinobacteria, Bacteroidetes. Moreover, the smaller the level of bacterial, the greater the difference among Dendrobium species. Soil is the most important environmental factor affecting the bacterial communities in the rhizosphere soil of Dendrobium. These results fill the gap in the rhizosphere microbial community of Dendrobium and provide a theoretical basis for the subsequent mining of microbial functions and the study of biological fertilizers.

scholarly journals Human Skin Bacterial Community Response to Probiotic (Lactobacillus reuteri DSM 17938) Introduction

2020 ◽  
Vol 8 (8) ◽  
pp. 1223
Author(s):  
Marie Frerejacques ◽  
Camille Rousselle ◽  
Loüen Gauthier ◽  
Salomé Cottet-Emard ◽  
Léa Derobert ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Lactobacillus Reuteri ◽  
Community Response ◽  
Community Diversity ◽  
Colonization Rate ◽  
Bacterial Strains ◽  
Skin Microbiota ◽  
Potential Health ◽  
The Impact

The introduction of a strain or consortium has often been considered as a potential solution to restore microbial ecosystems. Extensive research on the skin microbiota has led to the development of probiotic products (with live bacterial strains) that are likely to treat dysbiosis. However, the effects of such introductions on the indigenous microbiota have not yet been investigated. Here, through a daily application of Lactobacillus reuteri DSM 17938 on volunteers’ forearm skin, we studied in vivo the impact of a probiotic on the indigenous skin bacterial community diversity using Terminal-Restriction Fragment Length Polymorphism (T-RFLP) for 3 weeks. The results demonstrate that Lactobacillus reuteri DSM 17938 inoculum had a transient effect on the indigenous community, as the resilience phenomenon was observed within the skin microbiota. Moreover, Lactobacillus reuteri DSM 17938 monitoring showed that, despite a high level of detection after 2 weeks of application, thereafter the colonization rate drops drastically. The probiotic colonization rate was correlated significantly to the effect on the indigenous microbial community structure. These preliminary results suggest that the success of probiotic use and the potential health benefits resides in the interactions with the human microbiota.

scholarly journals Uterine and vaginal bacterial community diversity prior to artificial insemination between pregnant and nonpregnant postpartum cows1

2019 ◽  
Vol 97 (10) ◽  
pp. 4298-4304 ◽  
Author(s):  
Taylor B Ault ◽  
Brooke A Clemmons ◽  
Sydney T Reese ◽  
Felipe G Dantas ◽  
Gessica A Franco ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Artificial Insemination ◽  
Bacterial Communities ◽  
Bacterial Species ◽  
Beef Cows ◽  
Community Diversity ◽  
Rrna Gene ◽  
Bacterial Community Diversity ◽  
Hypervariable Regions ◽  
Time Of Breeding

Abstract The present study evaluated the bovine vaginal and uterine bacterial community diversity and its relationship to fertility. Postpartum beef cows (n = 68) were synchronized beginning on day −21 and ending with timed artificial insemination (TAI) on day 0. Pregnancy was diagnosed 30 d after TAI. Uterine and vaginal flushes were collected on day −21, −9, and −2 for bacterial DNA extraction to sequence the V1 to V3 hypervariable regions of the 16S rRNA gene. Results indicated a decrease in the number of bacterial species over time in the uterus of resulting pregnant and nonpregnant beef cows (P < 0.0001). Principal coordinate analyses (PCoA) depicted clustering of samples, indicating closely related bacterial communities, by day in the uterus and vagina (P < 0.0001). At day −2, uterine samples from nonpregnant and pregnant animals clustered separately (P < 0.0001), with nonpregnant animal samples clustering tightly together. Overall, the current study suggests the shift in the reproductive bacterial communities’ diversity and phylogenetic relationship leading up to the time of breeding may contribute to successful pregnancy establishment.

scholarly journals Variation of Bacterial Community Diversity in Rhizosphere Soil of Sole-Cropped versus Intercropped Wheat Field after Harvest

PLoS ONE ◽  
2016 ◽  
Vol 11 (3) ◽  
pp. e0150618 ◽  
Author(s):  
Zhenping Yang ◽  
Wenping Yang ◽  
Shengcai Li ◽  
Jiaomin Hao ◽  
Zhifeng Su ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Rhizosphere Soil ◽  
Community Diversity ◽  
Wheat Field ◽  
Bacterial Community Diversity
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