scholarly journals Short Note: Development and characterization of 16 new polymorphic microsatellite loci for Schima superba (Theaceae)

2013 ◽  
Vol 62 (1-6) ◽  
pp. 124-126 ◽  
Author(s):  
Hong-Yu Niu ◽  
Wan-Hui Ye ◽  
Zheng-Feng Wang ◽  
Ying Chen ◽  
Hong-Lin Cao ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Large Scale ◽  
Short Note ◽  
Schima Superba ◽  
Broad Leaved Forest ◽  
Genetic Diversity And Structure ◽  
Scale Structures ◽  
Polymorphic Microsatellite ◽  
Leaved Forest

Abstract Schima superba is a common dominant tree species in evergreen broad-leaved forest in subtropical China. Despite its multiple usages in wood industry, reforestation and traditional Chinese medicine, its genetic diversity is poorly studied. To help studying its genetic diversity and structure in the future, after microsatellite enrichment and screening, we identified 16 microsatellites in S. superba. These markers showed polymorphism in three populations. The number of alleles per locus ranged from 3 to 32 with a mean of 14. Within populations, the observed and unbiased expected heterozygosities ranged from 0.048 to 0.926 and from 0.048 to 0.949, respectively. The newly developed 16 microsatellites will be useful for investigating the genetic diversity and structure from large scale patterns to fine-scale structures in this species.

scholarly journals Development and characterization of 24 polymorphic microsatellitelocifor the freshwater fishIchthyoelephas longirostris(Characiformes: Prochilodontidae)

PeerJ ◽  
2016 ◽  
Vol 4 ◽  
pp. e2419 ◽  
Author(s):  
Ricardo M. Landínez-García ◽  
Edna J. Márquez
Keyword(s):  
Genetic Diversity ◽  
Migratory Species ◽  
Genetic Stock ◽  
Genetic Studies ◽  
Genetic Diversity And Structure ◽  
Polymorphic Microsatellite ◽  
First Time ◽  
Management And Conservation ◽  
Generation Sequencing

The Neotropical freshwater fishIchthyoelephas longirostris(Characiformes: prochilodontidae) is a short-distance migratory species endemic to Colombia. This study developed for the first time a set of 24 polymorphic microsatellitelociby using next-generation sequencing to explore the population genetics of this commercially exploited species. Nineteen of theselociwere used to assess the genetic diversity and structure of 193I. longirostrisin three Colombian rivers of the Magdalena basin. Results showed that a single genetic stock circulates in the Cauca River, whereas other single different genetic stock is present in the rivers Samaná Norte and San Bartolomé-Magdalena. Additionally,I. longirostriswas genetically different among and across rivers. This first insight about the population genetic structure ofI. longirostrisis crucial for monitoring the genetic diversity, the management and conservation of its populations, and complement the genetic studies in Prochilodontidae.

scholarly journals Short Note: Isolation and Characterization of 12 Polymorphic Microsatellite Markers in Engelhardia roxburghiana (Juglandaceae)

2014 ◽  
Vol 63 (1-6) ◽  
pp. 109-112 ◽  
Author(s):  
Dan-Dan Zhang ◽  
Pi Luo ◽  
Ying Chen ◽  
Zheng-Feng Wang ◽  
Wan-Hui Ye ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Short Note ◽  
Screening Method ◽  
Wide Distribution ◽  
Enriched Library ◽  
Isolation And Characterization ◽  
Nuclear Microsatellite ◽  
Polymorphic Microsatellite

Abstract Engelhardia roxburghiana is a common half evergreen tree with a wide distribution in southeast Asia. Despite its ecological and pharmaceutical values, its genetic diversity is poorly studied. Our objective was to develop nuclear microsatellite markers to investigate the level of genetic diversity within and among populations in the future. Using the microsatellite-enriched library and PCR-based screening method, 12 microsatellite markers were developed and showed polymorphism in a population. The number of alleles per locus for these 12 microsatellites ranged from four to 15. The observed and expected heterozygosities ranged from 0.358 to 0.897 and from 0.369 to 0.886, respectively. The developed microsatellites will be useful for studying genetic diversity and population structure in E. roxburghiana.

Classification of vegetation in Cucphuong National Park with the aim of large-scale mapping, Vietnam

1996 ◽  
pp. 64-67 ◽  
Author(s):  
Nguen Nghia Thin ◽  
Nguen Ba Thu ◽  
Tran Van Thuy
Keyword(s):  
National Park ◽  
Large Scale ◽  
Satellite Images ◽  
Field Work ◽  
Aerial Photographs ◽  
Vegetation Map ◽  
Dense Forest ◽  
Broad Leaved Forest ◽  
Leaved Forest

The tropical seasonal rainy evergreen broad-leaved forest vegetation of the Cucphoung National Park has been classified and the distribution of plant communities has been shown on the map using the relations of vegetation to geology, geomorphology and pedology. The method of vegetation mapping includes: 1) the identifying of vegetation types in the remote-sensed materials (aerial photographs and satellite images); 2) field work to compile the interpretation keys and to characterize all the communities of a study area; 3) compilation of the final vegetation map using the combined information. In the classification presented a number of different level vegetation units have been identified: formation classes (3), formation sub-classes (3), formation groups (3), formations (4), subformations (10) and communities (19). Communities have been taken as mapping units. So in the vegetation map of the National Park 19 vegetation categories has been shown altogether, among them 13 are natural primary communities, and 6 are the secondary, anthropogenic ones. The secondary succession goes through 3 main stages: grassland herbaceous xerophytic vegetation, xerophytic scrub, dense forest.

scholarly journals Tree Change in Nemoral Spruce Forests of the Central Forest Reserve

2021 ◽  
pp. 459-476
Author(s):  
M. Yu. Pukinskaya
Keyword(s):  
Deciduous Forest ◽  
Climatic Conditions ◽  
Spruce Forest ◽  
Forest Reserve ◽  
Spruce Forests ◽  
The Past ◽  
Broad Leaved Forest ◽  
The Russian Federation ◽  
Leaved Forest

The paper discusses changes in forest-forming species in the nemoral spruce forests of the Central Forest Reserve (Tver Region, the Russian Federation). A comparison is made of the characterization of vegetation in the reserve spruce forests, carried out during the first survey of the reserve by Ya. Ya. Alekseev in 1931 (Alekseev, 1935) with the descriptions of vegetation made by the author from 2011 to 2019. It is shown that the coverage of nemoral herbs in the spruce forests of the reserve has increased over the past 90 years. In addition, three types of broadleaf trees (Tilia cordata Mill., Acer platanoides L. and Ulmus scabra Mill.) have greatly increased their abundance in the stand, most notably the linden. In recent decades, the decay of nemoral spruce forests has been taking place in the Central Forest Reserve. The birch-aspenspruce stand is not replenished with spruce renewal but is replaced by linden-maple forests. The vitality of spruce undergrowth is deteriorating. After the decay of a spruce forest, a change of the tree dominants occurs on 74% of the trial plots and the stand continues with a spruce forest on 26%. The largest part of the reserve's nemoral spruce forests arose after major disturbances 100–150 years ago (on the site of burned-out areas, hurricane windblows and cuttings). Old nemoral spruce forests were formed during the period when severe frosts prevented linden and maple from entering the stand. Currently, the coincidence of climate warming with the aging of the spruce stand and the removal of anthropogenic influence contributed to the release of maple and linden from the undergrowth into the stand and change to a spruce-deciduous forest. Under the prevailing climatic conditions, a return to the spruce forest is possible in the event of a burning out or when the climate becomes cold. The nemoral spruce forest is an ecotone type and, depending on conditions, becomes a spruce or broad-leaved forest.

scholarly journals Isolation and characterization of 36 polymorphic microsatellite markers in Schima superba (Theaceae)

2012 ◽  
Vol 99 (3) ◽  
pp. e123-e126 ◽  
Author(s):  
Hong-Yu Niu ◽  
Xiao-Yi Li ◽  
Wan-Hui Ye ◽  
Zheng-Feng Wang ◽  
Hong-Lin Cao ◽  
...  
Keyword(s):  
Microsatellite Markers ◽  
Schima Superba ◽  
Isolation And Characterization ◽  
Polymorphic Microsatellite

scholarly journals Development and characterization of microsatellite markers for two subspecies of Handroanthus chrysanthus

Rodriguésia ◽  
2021 ◽  
Vol 72 ◽  
Author(s):  
Augusta Yadira Cueva-Agila ◽  
Carlos Manchego ◽  
Cristian Bastidas ◽  
Manuel Curto
Keyword(s):  
Genetic Diversity ◽  
South America ◽  
Genetic Analysis ◽  
Microsatellite Markers ◽  
High Throughput Sequencing ◽  
Biodiversity Loss ◽  
Important Species ◽  
Polymorphic Microsatellites ◽  
Genetic Diversity And Structure

Abstract An understanding of the genetic diversity and structure of plant species is essential in order to comprehend the degree of biodiversity loss and to develop successful restoration programs. Handroanthus is an important genus that presents one of the most valuable timbers of South America. Handroanthus chrysanthus is an important species distributed in Central and South America. Microsatellite markers are not previously developed for this species. Ten microsatellites for Handroanthus chrysanthus developed using high-throughput sequencing are presented here. The usefulness of these microsatellite loci for the genetic analysis of subspecies H. chrysanthus subsp. chrysanthus (distributed in coastal dry forests) and subspecies H. chrysanthus subsp. meridionalis (distributed in premontane moist forests) is analyzed. At least eight polymorphic microsatellites are useful for each subspecies, seven of which can be used in both subspecies.

scholarly journals Trans-oceanic host dispersal explains high seabird tick diversity on Cape Verde islands

2012 ◽  
Vol 8 (4) ◽  
pp. 616-619 ◽  
Author(s):  
E. Gómez-Díaz ◽  
J. A. Morris-Pocock ◽  
J. González-Solís ◽  
K. D. McCoy
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Large Scale ◽  
Evolutionary Ecology ◽  
Global Scale ◽  
Cape Verde ◽  
Metapopulation Dynamics ◽  
Biogeographic Patterns ◽  
Genetic Diversity And Structure

Parasites represent ideal models for unravelling biogeographic patterns and mechanisms of diversification on islands. Both host-mediated dispersal and within-island adaptation can shape parasite island assemblages. In this study, we examined patterns of genetic diversity and structure of Ornithodoros seabird ticks within the Cape Verde Archipelago in relation to their global phylogeography. Contrary to expectations, ticks from multiple, geographically distant clades mixed within the archipelago. Trans-oceanic colonization via host movements probably explains high local tick diversity, contrasting with previous research that suggests little large-scale dispersal in these birds. Although host specificity was not obvious at a global scale, host-associated genetic structure was found within Cape Verde colonies, indicating that post-colonization adaptation to specific hosts probably occurs. These results highlight the role of host metapopulation dynamics in the evolutionary ecology and epidemiology of avian parasites and pathogens.

Characterization of polymorphic microsatellite markers and genetic diversity in wild bronze featherback, Notopterus notopterus (Pallas, 1769)

2013 ◽  
Vol 40 (12) ◽  
pp. 6625-6631 ◽  
Author(s):  
Arti Gupta ◽  
Kuldeep K. Lal ◽  
Peyush Punia ◽  
Rajeev K. Singh ◽  
Vindhya Mohindra ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Polymorphic Microsatellite ◽  
Notopterus Notopterus
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