ABSTRACTBacterial genomes sometimes contain genes that code for homologues of global regulators, the function of which is unclear. In members of the familyEnterobacteriaceae, cells express the global regulator H-NS and its paralogue StpA. InEscherichia coli, out of providing a molecular backup for H-NS, the role of StpA is poorly characterized. The enteroaggregativeE. colistrain 042 carries, in addition to thehnsandstpAgenes, a third gene encoding anhnsparalogue (hns2). We present in this paper information about its biological function. Transcriptomic analysis has shown that the H-NS2 protein targets a subset of the genes targeted by H-NS. Genes targeted by H-NS2 correspond mainly with horizontally transferred (HGT) genes and are also targeted by the Hha protein, a fine-tuner of H-NS activity. Compared with H-NS, H-NS2 expression levels are lower. In addition, H-NS2 expression exhibits specific features: it is sensitive to the growth temperature and to the nature of the culture medium. This novel H-NS paralogue is widespread within theEnterobacteriaceae.IMPORTANCEGlobal regulators such as H-NS play key relevant roles enabling bacterial cells to adapt to a changing environment. H-NS modulates both core and horizontally transferred (HGT) genes, but the mechanism by which H-NS can differentially regulate these genes remains to be elucidated. There are several instances of bacterial cells carrying genes that encode homologues of the global regulators. The question is what the roles of these proteins are. We noticed that the enteroaggregativeE. colistrain 042 carries a new hitherto uncharacterized copy of thehnsgene. We decided to investigate why this pathogenicE. colistrain requires an extra H-NS paralogue, termed H-NS2. In our work, we show that H-NS2 displays specific expression and regulatory properties. H-NS2 targets a subset of H-NS-specific genes and may help to differentially modulate core and HGT genes by the H-NS cellular pool.