scholarly journals Insight into epidemiological importance of phytoplasma vectors in vineyards in South Moravia, Czech Republic

2018 ◽  
Vol 54 (No. 4) ◽  
pp. 234-239 ◽  
Author(s):  
Šafářová Dana ◽  
Lauterer Pavel ◽  
Starý Martin ◽  
Válová Pavla ◽  
Navrátil Milan
Keyword(s):  
Czech Republic ◽  
Fragment Length Polymorphism ◽  
Insect Species ◽  
Nested Polymerase Chain Reaction ◽  
Bois Noir ◽  
Polymerase Chain ◽  
Serious Disease ◽  
South Moravia ◽  
Insight Into

Bois noir (BN), caused by ‘Candidatus Phytoplasma solani’, is a serious disease of grapevines in Europe. During the 2010–2012 survey in Perná vineyard (South Moravia, Czech Republic) a total of 4854 insect individuals were collected and among these, 95 insect species belonging to Auchenorrhyncha (77 species), Heteroptera (12), and Psylloidea (62) were indentified. The nested polymerase chain reaction-restriction fragment length polymorphism analyses confirmed Hyalesthes obsoletus as the main BN vector with 43.8% of phytoplasma positive individuals on average. A significant role of Anaceratagallia ribauti (22.6% of phytoplasma positive specimens) should be taken into account based on its occurrence and incidence of infected individuals. Eleven insect species were identified as new carriers of ‘Ca. P. solani’ or suggested as potential BN vectors in this work.

scholarly journals Occurrence of a 16SrIV Group Phytoplasma not Previously Associated with Palm Species in Yucatan, Mexico

Plant Disease ◽  
2011 ◽  
Vol 95 (3) ◽  
pp. 256-262 ◽  
Author(s):  
Roberto Vázquez-Euán ◽  
Nigel Harrison ◽  
María Narvaez ◽  
Carlos Oropeza
Keyword(s):  
Cocos Nucifera ◽  
Restriction Enzymes ◽  
Nested Polymerase Chain Reaction ◽  
Palm Trees ◽  
Palm Species ◽  
Leaf Yellowing ◽  
Sabal Mexicana ◽  
Polymerase Chain ◽  
First Time

The occurrence of 16SrIV group phytoplasmas in palm species Sabal mexicana and Pseudophoenix sargentii is reported here for the first time. Palm trees showed leaf decay and leaf yellowing syndromes, respectively. An amplification product (1.4 kb) was obtained in symptomatic S. mexicana (18 of 21) and symptomatic P. sargentii (1 of 1) palm trees sampled in different locations in Yucatan State, Mexico; five of the positive S. mexicana and the positive P. sargentii trees died. The identity of the phytoplasmas from these species was determined by restriction fragment length polymorphism profiling with restriction enzymes AluI and HinfI, showing there could be two phytoplasma strains of the 16SrIV group. In one S. mexicana palm, the profile was the same as observed with these enzymes for phytoplasmas of 16SrIV-A subgroup, previously associated with Cocos nucifera palm trees and, in the rest of the trees, including the P. sargentii palm, the profile was for phytoplasmas of the 16SrIV-D subgroup. These identities were supported by analyses of the amplicons obtained by nested polymerase chain reaction by nucleotide-nucleotide BLAST analysis. Geographical distribution of the association S. mexicana/16SrIV group phytoplasmas was found widely dispersed in Yucatan State. A potential role of S. mexicana palm trees as a permanent source of phytoplasma inoculum is suggested. In addition to P. sargentii, other palm species (Thrinax radiata and C. nucifera) coexisting with S. mexicana trees were also sampled and analyzed.

scholarly journals Rhinoviruses as Pathogens of the Lower Respiratory Tract

2000 ◽  
Vol 7 (5) ◽  
pp. 409-414 ◽  
Author(s):  
Nikolaos G Papadopoulos ◽  
Sebastian L Johnson
Keyword(s):  
Airway Disease ◽  
Current Evidence ◽  
Lower Airway ◽  
Respiratory Pathogens ◽  
Local Inflammatory Response ◽  
Upper Respiratory ◽  
Polymerase Chain ◽  
Serious Disease ◽  
The Individual

Rhinoviruses (RVs) are the most common upper respiratory pathogens, inducing the majority of common colds worldwide. RV-related morbidity, although significant cumulatively, has been considered trivial for the individual patient. However, recent strong epidemiological associations of RVs with asthma exacerbations, including severe episodes requiring hospitalization, indicate that RV infections can result in serious disease. Current evidence supports the possibility that RVs infect the lower airways, inducing a local inflammatory response. Such evidence suggests that the role of RVs in other lower respiratory diseases, such as pneumonia, bronchitis, bronchiolitis and cystic fibrosis, should be re-examined with polymerase chain reaction-based methodologies, which are considerably more sensitive than traditional, cell culture-based techniques. The mechanisms through which RVs induce lower airway disease are studied to understand the relative contributions of the epithelial, neurogenic and immune components in the antiviral response, and to permit the design and implementation of specific treatments.

scholarly journals Detection of NaturalToxoplasma gondiiInfection in Chicken in Thika Region of Kenya Using Nested Polymerase Chain Reaction

2016 ◽  
Vol 2016 ◽  
pp. 1-5 ◽  
Author(s):  
John Mokua Mose ◽  
John Maina Kagira ◽  
Simon Muturi Karanja ◽  
Maina Ngotho ◽  
David Muchina Kamau ◽  
...  
Keyword(s):  
Polymerase Chain Reaction ◽  
Toxoplasma Gondii ◽  
Human Beings ◽  
Chain Reaction ◽  
Nested Polymerase Chain Reaction ◽  
Free Range ◽  
Age Dependent ◽  
Polymerase Chain ◽  
The Difference

The detection ofToxoplasma gondiiin free-range chickens is a good indicator of possible risk to human beings. The aim of this study was to investigate the occurrence ofT. gondiiin free-range chicken using polymerase chain reaction (PCR). Brain samples from 105 free-range chickens from three administrative areas in Thika region, Kenya, were collected, DNA-extracted, and analyzed using PCR to detect presence ofT. gondii. The overall prevalence ofT. gondiiin all the three areas was 79.0% (95% CI: 70.0–86.4%) and the prevalence across the three areas was not significantly different (P=0.5088;χ2=1.354). Female chickens had higher (79.4%) prevalence than males (78.6%), although the difference was not significant (P=0.922,χ2= 0.01). However, chickens that were more than 2 years old had significantly (P=0.003;χ2= 11.87) higher prevalence compared to younger ones. The study indicates that there was a high occurrence ofT. gondiiinfection in free-range chickens from Thika region and that the infection rate is age dependent. Further studies should be carried out to determine the possible role of roaming chickens in the epidemiology of the disease among humans in the area.

scholarly journals Identification and Epidemic Distribution of Two Flavescence Dorée—Related Phytoplasmas in Veneto (Italy)

Plant Disease ◽  
1999 ◽  
Vol 83 (10) ◽  
pp. 925-930 ◽  
Author(s):  
Marta Martini ◽  
Ermanno Murari ◽  
Nicola Mori ◽  
Assunta Bertaccini
Keyword(s):  
16S Rdna ◽  
Fragment Length Polymorphism ◽  
The European Union ◽  
Direct Pcr ◽  
Nested Polymerase Chain Reaction ◽  
Flavescence Dorée ◽  
Scaphoideus Titanus ◽  
Polymerase Chain ◽  
Elm Yellows ◽  
Infected Grapevine

Grapevine yellows associated with phytoplasmas of the elm yellows group (16SrV), better known as flavescence dorée (FD), is a serious quarantine problem in some important grapevine growing regions in the European Union. A survey was carried out in 1997 to 1998 in Veneto region (Italy) where a serious outbreak of FD was in progress. Phytoplasma identification by nested polymerase chain reaction (PCR)/restriction fragment length polymorphism (RFLP) analyses on 275 grapevine samples and on batches of Scaphoideus titanus was carried out. RFLP analyses of the 16S rDNA/spacer region with TaqI detected the presence of two distinct elm yellows phytoplasma subgroups designated 16SrV-C and 16SrV-D in 77 FD-infected grapevine samples. Only phytoplasmas of the 16SrV-D subgroup were detected in S. titanus. In 1997, the two phytoplasma subgroups appeared to be located in two diverse geographic areas; but in 1998, the 16SrV-D type also was detected in the provinces where in 1997 only 16SrV-C type was identified. The sequencing of a 400-bp fragment at the 3′ end of 16S rDNA plus spacer region allowed a specific primer construction that was successfully employed for detection of both FD types in grapevine by direct PCR.

scholarly journals Genotyping of Cryptosporidium species in children suffering from diarrhea in Sharkyia Governorate, Egypt

2021 ◽  
Vol 15 (10) ◽  
pp. 1539-1546
Author(s):  
Samira Metwally Mohammad ◽  
Magda Saad Ali ◽  
Sara Ahmed Abdel-Rahman ◽  
Raghda Abdelrahman Moustafa ◽  
Mohamed Hassan Sarhan
Keyword(s):  
Polymerase Chain Reaction ◽  
Restriction Fragment Length Polymorphism ◽  
Length Polymorphism ◽  
Fragment Length ◽  
Fragment Length Polymorphism ◽  
Cryptosporidium Species ◽  
Chain Reaction ◽  
Nested Polymerase Chain Reaction ◽  
Polymerase Chain ◽  
Restriction Fragment Length

Introduction: The protozoan parasite Cryptosporidium is one of the principal reasons for childhood diarrhea around the world. This work aimed to differentiate Cryptosporidium species among children suffering from diarrhea in Sharkyia Governorate, Egypt. Methodology: A total of 97 fecal specimens were taken from children suffering from diarrhea, attending Pediatric Clinics of Zagazig University and Al-Ahrar Hospitals. Full history was taken. Stool samples were examined microscopically using modified Ziehl–Neelsen stain for detection of Cryptosporidium oocysts. To identify Cryptosporidium genotypes, positive samples were then subjected to nested Polymerase chain reaction-restriction fragment length polymorphism targeting Cryptosporidium oocyst wall protein gene. Results: The overall detection rate was 27.8% (27/97) using modified Ziehl–Neelsen stain staining method. Using nested polymerase chain reaction, the gene was amplified in 85.2% (23/27). Restriction fragment length polymorphism analysis revealed that 65.2% (15/23) were Cryptosporidium hominis, 30.4% (7/23) were Cryptosporidium parvum, and one sample was not typed (4.4%). The significant risk factors associated with Cryptosporidium infection in children were animal contact and residence in rural areas. Conclusions: Cryptosporidium is a common enteric parasite affecting children in Sharkyia Governorate, Egypt, with the predominance of C. hominis genotype in children.

scholarly journals Molecular identification of Candidatus Phytoplasma spp. associated with Sophora yellow stunt in Iran

2017 ◽  
Vol 57 (2) ◽  
pp. 167-172 ◽  
Author(s):  
Touhid Allahverdi ◽  
Heshmatollah Rahimian ◽  
Mina Rastgou
Keyword(s):  
Phylogenetic Trees ◽  
Fragment Length Polymorphism ◽  
Chain Reaction ◽  
Mazandaran Province ◽  
Nested Polymerase Chain Reaction ◽  
Sophora Alopecuroides ◽  
Leaf Yellowing ◽  
Tehran Province ◽  
Polymerase Chain ◽  
West Azerbaijan

Abstract In the spring of 2012, sophora (Sophora alopecuroides L.) plants showing symptoms of leaf yellowing, little leaves and stunting were observed in Firooz-kuh (Tehran province), Sari (Mazandaran province) and Urmia (West Azerbaijan province) in Iran. Symptomatic plants from the three locations were subjected to nested polymerase chain reaction (PCR) to amplify 16SrRNA using primer pair P1/P7 followed by primer pair R16F2n/R16R2. The amplicons were purified, sequenced and the nucleotide sequences were analyzed by virtual restriction fragment length polymorphism (RFLP). The phytoplasmas associated with the yellows disease were identified as members of the 16SrIX group (Candidatus Phytoplasma phoenicium) and the 16SrXII group (Candidatus Phytoplasma solani). The two phytoplasmas were placed in 16SrIX-C and 16SrXII-A subgroups, respectively, in constructed phylogenetic trees. This is the first report on sophora yellows associated with Candidatus Phytoplasma phoenicium.

scholarly journals The effect of survivin gene in breast cancer risk and prognosis

2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Roya Mashadiyeva ◽  
Canan Cacina ◽  
Soykan Arikan ◽  
Saime Sürmen ◽  
Seyda Demirkol ◽  
...  
Keyword(s):  
Breast Cancer ◽  
Tumor Suppressor Genes ◽  
Promoter Region ◽  
Tumor Necrosis ◽  
Fragment Length Polymorphism ◽  
Chain Reaction ◽  
Inhibitory Protein ◽  
Pcr Rflp ◽  
Polymerase Chain

Abstract Objectives The accumulation of genetic damages in onset of cancer induce activation of protooncogenes or inactivation of tumor suppressor genes thus cause disruption of the balance between cell proliferation and programmed cell death. As a member of the apoptosis inhibitory protein family (IAP), survivin play important roles in carcinogenesis process. The evidence suggests that polymorphisms located in survivin promoter region may be important in determining genetic susceptibility of cancer. In this study, we aimed to examine a possible role of survivin −31 and −625 G/C gene polymorphisms in breast cancer. Methods A total of 160 breast cancer cases and 153 healthy controls were genotyped by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) methodology. Results Genotype and allele distributions and of −31 and −625 G/C polymorphisms were not significantly different between two groups. However, we observed the carriers of survivin −625 C/G polymorphism homozygous genotypes (GG/CC) were the significantly higher in patients with tumor necrosis (p=0.047). Conclusions Our results suggest that survivin −625 C/G polymorphism may be related with tumor prognosis, but we are opinion of that our result require to be validated in larger samples and further comprehensive research may explore the correlation.

scholarly journals Experimental infection with Neospora caninum in pregnant bitches

2012 ◽  
Vol 21 (3) ◽  
pp. 232-236 ◽  
Author(s):  
Guacyara Tenorio Cavalcante ◽  
Rodrigo Martins Soares ◽  
Sandra Mayumi Nishi ◽  
Stéfano Carlo Filippo Hagen ◽  
Camila Infantoni Vannucchi ◽  
...  
Keyword(s):  
Nested Pcr ◽  
Fragment Length Polymorphism ◽  
Indirect Fluorescent Antibody Test ◽  
Neospora Caninum ◽  
Fluorescent Antibody ◽  
Antibody Test ◽  
Transplacental Transmission ◽  
Nested Polymerase Chain Reaction ◽  
The Central Nervous System ◽  
Polymerase Chain

In this study, transplacental transmission of Neospora caninum in bitches at different stages of pregnancy was evaluated. Three bitches were inoculated in the 3rd week and three in the 6th week of gestation with 10(8) tachyzoites of N. caninum (Nc-1 strain). All the infected bitches and at least one of their offspring presented anti-N. caninum antibodies according to the indirect fluorescent antibody test (IFAT > 400). The pups and their mothers were sacrificed and tissues from the central nervous system (CNS), popliteal lymph nodes, skeletal muscle, brain, lungs, heart and liver were analyzed for the presence of N. caninum using the nested polymerase chain reaction (nested PCR), restriction fragment length polymorphism (RFLP) and immunohistochemistry (IHC). The parasite was found in the pups in lymph node, CNS, heart and liver tissues using nested PCR. There was no difference in perinatal mortality between the offspring from bitches infected in the 3rd week of gestation (60%) and in the 6th week (53.8%).

Sign in / Sign up

Export Citation Format

Share Document