scholarly journals Occurrence of a 16SrIV Group Phytoplasma not Previously Associated with Palm Species in Yucatan, Mexico

Plant Disease ◽  
2011 ◽  
Vol 95 (3) ◽  
pp. 256-262 ◽  
Author(s):  
Roberto Vázquez-Euán ◽  
Nigel Harrison ◽  
María Narvaez ◽  
Carlos Oropeza
Keyword(s):  
Cocos Nucifera ◽  
Restriction Enzymes ◽  
Nested Polymerase Chain Reaction ◽  
Palm Trees ◽  
Palm Species ◽  
Leaf Yellowing ◽  
Sabal Mexicana ◽  
Polymerase Chain ◽  
First Time

The occurrence of 16SrIV group phytoplasmas in palm species Sabal mexicana and Pseudophoenix sargentii is reported here for the first time. Palm trees showed leaf decay and leaf yellowing syndromes, respectively. An amplification product (1.4 kb) was obtained in symptomatic S. mexicana (18 of 21) and symptomatic P. sargentii (1 of 1) palm trees sampled in different locations in Yucatan State, Mexico; five of the positive S. mexicana and the positive P. sargentii trees died. The identity of the phytoplasmas from these species was determined by restriction fragment length polymorphism profiling with restriction enzymes AluI and HinfI, showing there could be two phytoplasma strains of the 16SrIV group. In one S. mexicana palm, the profile was the same as observed with these enzymes for phytoplasmas of 16SrIV-A subgroup, previously associated with Cocos nucifera palm trees and, in the rest of the trees, including the P. sargentii palm, the profile was for phytoplasmas of the 16SrIV-D subgroup. These identities were supported by analyses of the amplicons obtained by nested polymerase chain reaction by nucleotide-nucleotide BLAST analysis. Geographical distribution of the association S. mexicana/16SrIV group phytoplasmas was found widely dispersed in Yucatan State. A potential role of S. mexicana palm trees as a permanent source of phytoplasma inoculum is suggested. In addition to P. sargentii, other palm species (Thrinax radiata and C. nucifera) coexisting with S. mexicana trees were also sampled and analyzed.

scholarly journals Detection of NaturalToxoplasma gondiiInfection in Chicken in Thika Region of Kenya Using Nested Polymerase Chain Reaction

2016 ◽  
Vol 2016 ◽  
pp. 1-5 ◽  
Author(s):  
John Mokua Mose ◽  
John Maina Kagira ◽  
Simon Muturi Karanja ◽  
Maina Ngotho ◽  
David Muchina Kamau ◽  
...  
Keyword(s):  
Polymerase Chain Reaction ◽  
Toxoplasma Gondii ◽  
Human Beings ◽  
Chain Reaction ◽  
Nested Polymerase Chain Reaction ◽  
Free Range ◽  
Age Dependent ◽  
Polymerase Chain ◽  
The Difference

The detection ofToxoplasma gondiiin free-range chickens is a good indicator of possible risk to human beings. The aim of this study was to investigate the occurrence ofT. gondiiin free-range chicken using polymerase chain reaction (PCR). Brain samples from 105 free-range chickens from three administrative areas in Thika region, Kenya, were collected, DNA-extracted, and analyzed using PCR to detect presence ofT. gondii. The overall prevalence ofT. gondiiin all the three areas was 79.0% (95% CI: 70.0–86.4%) and the prevalence across the three areas was not significantly different (P=0.5088;χ2=1.354). Female chickens had higher (79.4%) prevalence than males (78.6%), although the difference was not significant (P=0.922,χ2= 0.01). However, chickens that were more than 2 years old had significantly (P=0.003;χ2= 11.87) higher prevalence compared to younger ones. The study indicates that there was a high occurrence ofT. gondiiinfection in free-range chickens from Thika region and that the infection rate is age dependent. Further studies should be carried out to determine the possible role of roaming chickens in the epidemiology of the disease among humans in the area.

scholarly journals Molecular identification of Candidatus Phytoplasma spp. associated with Sophora yellow stunt in Iran

2017 ◽  
Vol 57 (2) ◽  
pp. 167-172 ◽  
Author(s):  
Touhid Allahverdi ◽  
Heshmatollah Rahimian ◽  
Mina Rastgou
Keyword(s):  
Phylogenetic Trees ◽  
Fragment Length Polymorphism ◽  
Chain Reaction ◽  
Mazandaran Province ◽  
Nested Polymerase Chain Reaction ◽  
Sophora Alopecuroides ◽  
Leaf Yellowing ◽  
Tehran Province ◽  
Polymerase Chain ◽  
West Azerbaijan

Abstract In the spring of 2012, sophora (Sophora alopecuroides L.) plants showing symptoms of leaf yellowing, little leaves and stunting were observed in Firooz-kuh (Tehran province), Sari (Mazandaran province) and Urmia (West Azerbaijan province) in Iran. Symptomatic plants from the three locations were subjected to nested polymerase chain reaction (PCR) to amplify 16SrRNA using primer pair P1/P7 followed by primer pair R16F2n/R16R2. The amplicons were purified, sequenced and the nucleotide sequences were analyzed by virtual restriction fragment length polymorphism (RFLP). The phytoplasmas associated with the yellows disease were identified as members of the 16SrIX group (Candidatus Phytoplasma phoenicium) and the 16SrXII group (Candidatus Phytoplasma solani). The two phytoplasmas were placed in 16SrIX-C and 16SrXII-A subgroups, respectively, in constructed phylogenetic trees. This is the first report on sophora yellows associated with Candidatus Phytoplasma phoenicium.

scholarly journals First Report of Pear Decline Phytoplasmas on Pear in Serbia

Plant Disease ◽  
2005 ◽  
Vol 89 (7) ◽  
pp. 774-774 ◽  
Author(s):  
B. Duduk ◽  
M. Ivanović ◽  
A. Obradović ◽  
S. Paltrinieri ◽  
A. Bertaccini
Keyword(s):  
Nested Pcr ◽  
Restriction Enzymes ◽  
Diagnostic Procedures ◽  
Nested Polymerase Chain Reaction ◽  
Universal Primer ◽  
First Report ◽  
Taxonomy Group ◽  
Pyrus Communis L ◽  
Polymerase Chain ◽  
Symptomatic Plant

During August of 2004, pear (Pyrus communis L.) plants with typical symptoms of pear decline (PD) were observed in orchards in central Serbia. The affected plants showed premature reddening and upward rolling of leaves that often showed down-turned petioles. In some cases, premature defoliation was observed. Although a similar decline of pear was observed earlier, until now, the causal agent had not been identified. DNA was extracted with a chloroform/phenol procedure from fresh leaf midribs and branch phloem scrapes of four symptomatic and one asymptomatic pear plants separately. A nested polymerase chain reaction assay (PCR) was used for phytoplasma detection (first PCR round with P1/P7 (4) phytoplasma universal primer pair, followed by nested PCR with group 16SrX specific primers f01/r01) (3). With these primers, the expected products from phloem scrapes and midrib extracts of symptomatic plant samples were obtained. Restriction fragment length polymorphism (RFLP) analyses of the f01/r01 amplicon, with RsaI and SspI restriction enzymes, discriminating among 16SrX subgroup phytoplasmas, showed profiles corresponding to those of the apple proliferation phytoplasma group, 16SrX-C subgroup, “Candidatus Phytoplasma pyri” (2). A 1,155-bp sequence of 16S rDNA gene for one of the PA2f/r (1) amplicons obtained in nested PCR on P1/P7 products from one of the leaf midrib samples was deposited in GenBank (Accession No. AY949984); both strands of the fragment were sequenced with the Big Dye Terminator reaction kit (Applied Biosystems, Foster City, CA). The sequences were analyzed with the Chromas 1.55 DNA sequencing software (Technelysium, Queensland, Australia) and aligned with BLAST software ( http://www.ncbi.nlm.nih.gov ). The blast search showed 100% homology of this sequence with that of PD strain Y16392, confirming the identity with PD of the phytoplasma detected. To our knowledge, this is the first report of pear decline phytoplasmas in Serbia. References: (1) M. Heinrich et al. Plant Mol. Biol. Rep. 19:169, 2001. (2) IRPCM Phytoplasma/Spiroplasma Working Team-Phytoplasma Taxonomy Group. Int. J. Syst. Evol. Microbiol. 54:1243, 2004. (3) K.-H. Lorenz et al. Phytopathology 85:771, 1995. (4) Schneider et al. Pages 369–380 in: Molecular and Diagnostic Procedures in Mycoplasmology. Vol I. S. Razin and J. G. Tully, eds. The American Phytopathological Society, 1995.

scholarly journals Molecular Detection of Jujube Witches' Broom Phytoplasmas in Micropropagated Jujube Shoots

HortScience ◽  
2000 ◽  
Vol 35 (7) ◽  
pp. 1274-1275 ◽  
Author(s):  
J.B. Tian ◽  
H.P. Guo ◽  
A. Bertaccini ◽  
M. Martini ◽  
S. Paltrinieri ◽  
...  
Keyword(s):  
Restriction Enzymes ◽  
Shanxi Province ◽  
Nested Polymerase Chain Reaction ◽  
Group V ◽  
Pcr Products ◽  
Zizyphus Jujuba ◽  
Polymerase Chain ◽  
Positive Results ◽  
Important Disease ◽  
Apparently Healthy

Jujube (Zizyphus jujuba Mill.) witches' broom (JWB) is the most important disease in the areas of jujube cultivation in China, where it occurs every year. Micropropagated shoots of the three most important cultivars (`Lizao', `Junzao', and `Muzao') in the National Jujube Gene Pool, collected at the Pomology Institute of Shanxi province, were tested for the presence of phytoplasmas. Phytoplasma ribosomal (16Sr) general and specific primer pairs were used in direct or nested polymerase chain reaction (PCR). Positive results were obtained only from symptomatic micropropagated samples of `Lizao' and from phytoplasma controls. Restriction fragment length polymorphism (RFLP) analyses of PCR products with several restriction enzymes revealed that the phytoplasmas infecting the symptomatic plants belong to the 16SrRNA group V subgroup B. The positive correlation between symptoms and the presence of phytoplasmas was verified in tissue culture. Samples from apparently healthy shoots of `Junzao', `Muzao', and `Lizao' were free of phytoplasmas.

scholarly journals New records and genetic diversity of Mycoplasma ovis in free-ranging deer in Brazil

2020 ◽  
Vol 148 ◽  
Author(s):  
Marcos Rogério André ◽  
José Maurício Barbanti Duarte ◽  
Luiz Ricardo Gonçalves ◽  
Ana Beatriz Vieira Sacchi ◽  
Márcia Mariza Gomes Jusi ◽  
...  
Keyword(s):  
New Records ◽  
Chain Reaction ◽  
Deer Species ◽  
The Usa ◽  
Polymerase Chain ◽  
Human Infections ◽  
Free Ranging ◽  
Reservoir Hosts ◽  
First Time

Abstract Cervids represent a mammal group which plays an important role in the maintenance of ecological balance. Recent studies have highlighted the role of these species as reservoirs for several arthropods-borne pathogens. Globally, hemotropic mycoplasmas (haemoplasmas) are emerging or remerging bacteria that attach to red blood cells of several mammals species causing hemolytic anaemia. Therefore, the aim of this study was to investigate the occurrence and assess the phylogenetic positioning of Mycoplasma ovis in free-ranging deer from Brazil. Using a polymerase chain reaction targeting the 16S rRNA region, 18 (40%) out of 45 sampled deer were positive to M. ovis. Among the nine sequences analysed, four distinct genotypes were identified. The sequences detected in the present study were closely related to sequences previously identified in deer from Brazil and the USA. On the other hand, the Neighbour-Net network analysis showed that the human-associated M. ovis genotypes were related to genotypes detected in sheep and goats. The present study shows, for the first time, the occurrence of M. ovis in Mazama gouazoubira and Mazama bororo deer species, expanding the knowledge on the hosts harbouring this haemoplasma species. Once several deer species have your population in decline, additional studies are needed to evaluate the pathogenicity of M. ovis among deer populations around the world and assess its potential as reservoir hosts to human infections.

Dog’s genotype of Giardia duodenalis in human: first evidence in Europe

2015 ◽  
Vol 60 (4) ◽  
Author(s):  
Gabriela Štrkolcová ◽  
Marián Maďar ◽  
Barbara Hinney ◽  
Mária Goldová ◽  
Jana Mojžišová ◽  
...  
Keyword(s):  
Giardia Duodenalis ◽  
Human Infection ◽  
Perianal Area ◽  
Nested Polymerase Chain Reaction ◽  
Genotype C ◽  
Health Relevance ◽  
Polymerase Chain ◽  
Microscopic Diagnosis

AbstractThe unicellular parasite Giardia duodenalis has been divided to eight assemblages (A-H) from which A and B have the most important zoonotic potential. All remaining genotypes have a strong commitment to various host animals. We present here the first clinical case of a human infection with the dog-specific genotype C of G. duodenalis in Slovakia. The patient, 44-year-old woman, suffered from long-term diarrhoea, abdominal pain, anorexia, weight loss, severe itching and dermatitis in the perianal area. The initial microscopic diagnosis was completed by a nested polymerase chain reaction (PCR) which revealed the first evidence of human giardiasis caused by the dog-specific genotype of G. duodenalis on a European scale. A possible role of dogs in zoonotic transmission of giardiasis and its epidemiological and public health relevance is accentuated.

scholarly journals Testosterone regulates CYP2J19 -linked carotenoid signal expression in male red-backed fairywrens ( Malurus melanocephalus )

2020 ◽  
Vol 287 (1935) ◽  
pp. 20201687 ◽  
Author(s):  
Sarah Khalil ◽  
Joseph F. Welklin ◽  
Kevin J. McGraw ◽  
Jordan Boersma ◽  
Hubert Schwabl ◽  
...  
Keyword(s):  
Hormonal Regulation ◽  
Genetic Locus ◽  
Quantitative Polymerase Chain Reaction ◽  
Honest Signal ◽  
Malurus Melanocephalus ◽  
Signal Production ◽  
Polymerase Chain ◽  
Underlying Mechanisms ◽  
First Time

Carotenoid pigments produce most red, orange and yellow colours in vertebrates. This coloration can serve as an honest signal of quality that mediates social and mating interactions, but our understanding of the underlying mechanisms that control carotenoid signal production, including how different physiological pathways interact to shape and maintain these signals, remains incomplete. We investigated the role of testosterone in mediating gene expression associated with a red plumage sexual signal in red-backed fairywrens ( Malurus melanocephalus ). In this species, males within a single population can flexibly produce either red/black nuptial plumage or female-like brown plumage. Combining correlational analyses with a field-based testosterone implant experiment and quantitative polymerase chain reaction, we show that testosterone mediates expression of carotenoid-based plumage in part by regulating expression of CYP2J19 , a ketolase gene associated with ketocarotenoid metabolism and pigmentation in birds. This is, to our knowledge, the first time that hormonal regulation of a specific genetic locus has been linked to carotenoid production in a natural context, revealing how endocrine mechanisms produce sexual signals that shape reproductive success.

scholarly journals Psittacid Adenovirus-2 infection in the critically endangered orange-bellied parrot (Neophema chrysogastor): A key threatening process or an example of a host-adapted virus?

2018 ◽  
Author(s):  
Nian Yang ◽  
Jennifer McLelland ◽  
David J. McLelland ◽  
Judy Clarke ◽  
Lucy Woolford ◽  
...  
Keyword(s):  
Captive Breeding ◽  
South Australia ◽  
Captive Population ◽  
Chick Survival ◽  
Nested Polymerase Chain Reaction ◽  
In Captivity ◽  
The Status ◽  
Polymerase Chain ◽  
One Year ◽  
First Time

AbstractPsittacid Adenovirus-2 (PsAdv-2) was identified in captive orange-bellied parrots (Neophema chrysogastor) during a multifactorial cluster of mortalities at the Adelaide Zoo, South Australia, and an outbreak of Pseudomonas aeruginosa septicaemia at the Tasmanian Department of Primary Industries, Parks, Water and Environment captive breeding facility, Taroona, Tasmania. This was the first time that an adenovirus had been identified in orange-bellied parrots and is the first report of PsAdv-2 in Australia. To investigate the status of PsAdv-2 in the captive population of orange-bellied parrots, 102 healthy birds from five breeding facilities were examined for the presence of PsAdv-2 DNA in droppings and/or cloacal swabs using a nested polymerase chain reaction assay. Additionally, eight birds released to the wild for the 2016 breeding season were similarly tested when they were recaptured prior to migration to be held in captivity for the winter. PsAdv-2 was identified in all breeding facilities as well as the birds recaptured from the wild. Prevalence of shedding ranged from 29.7 to 76.5%, demonstrating that PsAdv-2 is endemic in the captive population of orange-bellied parrots and that wild parrots may have been exposed to the virus. PsAdv-2 DNA was detected in both cloacal swabs and faeces of the orange-bellied parrots, but testing both samples from the same birds suggested that testing faeces would be more sensitive than cloacal swabs. PsAdv-2 was not found in other psittacine species housed in nearby aviaries at the Adelaide Zoo. The source of the infection in the orange-bellied parrots remains undetermined. In this study, PsAdv-2 prevalence of shedding was higher in adult birds as compared to birds less than one year old. Preliminary data also suggested a correlation between adenovirus shedding prevalence within the breeding collection and chick survival.

scholarly journals Insight into epidemiological importance of phytoplasma vectors in vineyards in South Moravia, Czech Republic

2018 ◽  
Vol 54 (No. 4) ◽  
pp. 234-239 ◽  
Author(s):  
Šafářová Dana ◽  
Lauterer Pavel ◽  
Starý Martin ◽  
Válová Pavla ◽  
Navrátil Milan
Keyword(s):  
Czech Republic ◽  
Fragment Length Polymorphism ◽  
Insect Species ◽  
Nested Polymerase Chain Reaction ◽  
Bois Noir ◽  
Polymerase Chain ◽  
Serious Disease ◽  
South Moravia ◽  
Insight Into

Bois noir (BN), caused by ‘Candidatus Phytoplasma solani’, is a serious disease of grapevines in Europe. During the 2010–2012 survey in Perná vineyard (South Moravia, Czech Republic) a total of 4854 insect individuals were collected and among these, 95 insect species belonging to Auchenorrhyncha (77 species), Heteroptera (12), and Psylloidea (62) were indentified. The nested polymerase chain reaction-restriction fragment length polymorphism analyses confirmed Hyalesthes obsoletus as the main BN vector with 43.8% of phytoplasma positive individuals on average. A significant role of Anaceratagallia ribauti (22.6% of phytoplasma positive specimens) should be taken into account based on its occurrence and incidence of infected individuals. Eleven insect species were identified as new carriers of ‘Ca. P. solani’ or suggested as potential BN vectors in this work.

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