scholarly journals Agronomic Trait and Genetic Analysis of Latvian Flax Germplasm

2015 ◽  
Vol 2 ◽  
pp. 260
Author(s):  
Dainis Runģis ◽  
Linards Ļubinskis ◽  
Veneranda Stramkale
Keyword(s):  
Dna Markers ◽  
Dna Marker ◽  
Agronomic Traits ◽  
Field Trials ◽  
Breeding Programs ◽  
Genomic Libraries ◽  
Science Centre ◽  
History Of ◽  
Simple Sequence

There is a long history of flax cultivation in Latvia, and breeding programs were active until 1970’s, when flax breeding in Latvia was halted. Since 1992, the Agriculture Science Centre of Latgale (ASCL) has repatriated Latvian flax germplasm from various genebanks, as well as renewed limited breeding activities in flax. Currently, the ASCL holds a collection of 497 flax accessions, as well as 9865 accessions of various lines and hybrids developed at the LLZC since 1993. To assist in the characterization of this Latvian flax germplasm, we have utilised DNA markers to assess genetic diversity and relatedness, as well as surveying functional polymorphism. We have utilised Simple sequence repeat (SSR) markers developed from both genomic libraries as well as expressed sequences. The results of the DNA marker survey were utilised to determine the genetic polymorphism and relatedness within Latvian flax germplasm, and these results were compared with the analysis of agronomic traits carried out in field trials at the ASCL. The development of DNA markers linked to traits of agronomic importance will assist in the development of a Latvian flax breeding program. The use of DNA marker technology will allow more efficient assessment and rational utilization of Latvian flax germplasm.

scholarly journals Genetic Characterization of Apulian Olive Germplasm as Potential Source in New Breeding Programs

Plants ◽  
2019 ◽  
Vol 8 (8) ◽  
pp. 268 ◽  
Author(s):  
Sion ◽  
Taranto ◽  
Montemurro ◽  
Mangini ◽  
Camposeo ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Agronomic Traits ◽  
Rural Landscape ◽  
Sources Of Resistance ◽  
Breeding Programs ◽  
Potential Source ◽  
History Of ◽  
Olive Cultivation ◽  
Olive Quick Decline Syndrome

The olive is a fruit tree species with a century-old history of cultivation in theMediterranean basin. In Apulia (Southern Italy), the olive is of main social, cultural and economicimportance, and represents a hallmark of the rural landscape. However, olive cultivation in thisregion is threatened by the recent spread of the olive quick decline syndrome (OQDS) disease, thusthere is an urgent need to explore biodiversity and search for genetic sources of resistance. Herein,a genetic variation in Apulian olive germplasm was explored, as a first step to identify genotypeswith enhanced bio-agronomic traits, including resistance to OQDS. A preselected set of nuclearmicrosatellite markers allowed the acquisition of genotypic profiles, and to define geneticrelationships between Apulian germplasm and widespread cultivars. The analysis highlighted thebroad genetic variation in Apulian accessions and the presence of different unique genetic profiles.The results of this study lay a foundation for the organization of new breeding programs for olivegenetic improvement.

scholarly journals Genetic characterization of the 28 maize landraces in Paraná State

2017 ◽  
Vol 38 (4) ◽  
pp. 1715 ◽  
Author(s):  
Sara Regina Silvestrin Rovaris ◽  
Pedro Mário de Araújo ◽  
Deoclécio Domingos Garbuglio ◽  
Cleber Vinicius Guiaretta de Azevedo ◽  
Cássio Egídio Cavenaghi Prete
Keyword(s):  
Recurrent Selection ◽  
Agronomic Traits ◽  
Block Design ◽  
Breeding Programs ◽  
Randomized Block Design ◽  
Fixed Model ◽  
Maize Landraces ◽  
Ear Height ◽  
Female Flowering

The characterization of maize landraces is extremely important in breeding programs for use of these genotypes as sources of genetic variability. The objective of this study was to quantitatively characterize 28 populations of maize landraces from the state of Paraná using the estimates of the effects of varieties and heterosis parents and the general combining ability, thereby assessing the main agronomic traits. In the crop of 2008/09, 56 inter-varietal hybrids, obtained through a topcross, 28 populations of maize landraces and three check varieties were evaluated for female flowering (FF), plant height (PH), ear height (EH) and grain mass (GY). The treatments were evaluated in a randomized block design, with two replications, at three Paraná State locations: the Experimental Center of the Agronomic Institute of Paraná in Londrina (IAPAR) and the experimental units of Pato Branco and Ponta Grossa. The data were submitted to an analysis of variance, considering a fixed model for genotypes and a random model for environments; the averages grouped by the Scott-Knott test, along with intersections of topcrosses, were analyzed according to a readapted model proposed by Oliveira et al. (1997). According to estimates of the parental effects, the GI 133 population showed the most promising estimates for all characteristics. The GI 088 and GI 173 populations stood out with promising estimates of the effects of heterosis. The conclusion is that the populations GI 133 and GI 173 may be indicated for recurrent selection programs or participation in obtaining composites.

scholarly journals Characterization of mandarin citrus germplasm from Southern Brazil by morphological and molecular analyses

2003 ◽  
Vol 38 (7) ◽  
pp. 797-806 ◽  
Author(s):  
Patrícia Koehler-Santos ◽  
Ana Lúcia Cunha Dornelles ◽  
Loreta Brandão de Freitas
Keyword(s):  
Agronomic Traits ◽  
Southern Brazil ◽  
Breeding Programs ◽  
Molecular Analyses ◽  
Commercial Use ◽  
Citrus Germplasm ◽  
Pooled Dna ◽  
Almost All ◽  
Citrus Spp

The objective of this work was to characterize mandarin (Citrus spp.) germplasm from Southern Brazil by morphological and molecular analyses. Thirty seven cultivars from 34 distinct mandarin varieties were evaluated by morphological and agronomic traits of leaves, flowers and fruits, and by microsatellite markers. The morphological and agronomic characteristics suggested that almost all varieties can be produced for commercial use, and some, as the Satsuma variety, are recommended for breeding programs. Pooled DNA samples from 1-5 plants belonging to each cultivar were tested. Eight of the nine primers detected polymorphisms. Specific markers were found for some accessions. The dendrogram constructed with the morphological results divided the 37 cultivars into four groups, while that obtained with the microsatellites clustered 35 of the 37 cultivars into three groups only. Generally, intervarietal differences are not high, and this lack of agreement in the two multifactorial analyses indicates that diverse evolutionary factors are acting at these two levels of investigation.

Development and characterization of microsatellite markers from tropical forage Stylosanthes species and analysis of genetic variability and cross-species transferability

Genome ◽  
2011 ◽  
Vol 54 (12) ◽  
pp. 1016-1028 ◽  
Author(s):  
Amaresh Chandra ◽  
K.K. Tiwari ◽  
D. Nagaich ◽  
N. Dubey ◽  
S. Kumar ◽  
...  
Keyword(s):  
Genetic Improvement ◽  
Expressed Sequence Tag ◽  
Intraspecific Diversity ◽  
Genomic Libraries ◽  
Tropical Forage ◽  
Genomic Ssr ◽  
Functional Molecular Markers ◽  
Expressed Sequence ◽  
Simple Sequence

A limited number of functional molecular markers has slowed the desired genetic improvement of Stylosanthes species. Hence, in an attempt to develop simple sequence repeat (SSR) markers, genomic libraries from Stylosanthes seabrana B.L. Maass & ’t Mannetje (2n = 2x = 20) using 5′ anchored degenerate microsatellite primers were constructed. Of the 76 new microsatellites, 21 functional primer pairs were designed. Because of the small number of primer pairs designed, 428 expressed sequence tag (EST) sequences from seven Stylosanthes species were also examined for SSR detection. Approximately 10% of sequences delivered functional primer pairs, and after redundancy elimination, 57 microsatellite repeats were selected. Tetranucleotides followed by trinucleotides were the major repeated sequences in Stylosanthes ESTs. In total, a robust set of 21 genomic–SSR (gSSR) and 20 EST–SSR (eSSR) markers were developed. These markers were analyzed for intraspecific diversity within 20 S. seabrana accessions and for their cross-species transferability. Mean expected (He) and observed (Ho) heterozygosity values with gSSR markers were 0.64 and 0.372, respectively, whereas with eSSR markers these were 0.297 and 0.214, respectively. Dendrograms having moderate bootstrap value (23%–94%) were able to distinguish all accessions of S. seabrana with gSSR markers, whereas eSSR markers showed 100% similarities between few accessions. The set of 21 gSSRs, from S. seabrana, and 20 eSSRs, from selected Stylosanthes species, with their high cross-species transferability (45% with gSSRs, 86% with eSSRs) will facilitate genetic improvement of Stylosanthes species globally.

QTL analysis of yield-related traits and their association with functional markers in Brassica napus L.

2007 ◽  
Vol 58 (8) ◽  
pp. 759 ◽  
Author(s):  
Yuanyuan Li ◽  
Jinxiong Shen ◽  
Tonghua Wang ◽  
Qingfang Chen ◽  
Xingguo Zhang ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Agronomic Traits ◽  
High Yield ◽  
Functional Markers ◽  
Multiple Traits ◽  
Brassica Napus L ◽  
Breeding Programs ◽  
F2 Population ◽  
Expressed Sequence ◽  
Simple Sequence

Yield is one of the most important traits in Brassica napus breeding programs. Quantitative trait loci (QTLs) for yield-related traits based on genetic mapping would help breeders to develop high-yield cultivars. In this study, a genetic linkage map of B. napus, containing 142 sequence-related amplified polymorphism (SRAP) markers, 163 functional markers, 160 simple sequence repeat (SSR) markers, and 117 amplified fragment length polymorphism (AFLP) markers, was constructed in an F2 population of 184 individuals resulting from the cross SI-1300 × Eagle. This map covered 2054.51 cM with an average marker interval of 3.53 cM. Subsequently, QTLs were detected for 12 yield-related traits in Wuhan and Jingmen. In total, 133 QTLs were identified, including 14 consistent ones across the 2 locations. Fifteen of 20 linkage groups (LGs) were found to have QTLs for the 12 traits investigated, and most of the QTLs were clustered, especially on LGs N2 and N7, where similar QTL positions were identified for multiple traits. Eight of 10 QTLs for yield per plant (YP) were also associated with number of seeds per silique (SS), number of siliques per plant (SP), and/or 1000-seed weight (SW). In addition, 45 functional markers involved in 39 expressed sequence tags (ESTs) were linked to the QTLs of 12 traits. The present results may serve as a valuable basis for further molecular dissection of agronomic traits in B. napus, and the markers related to QTLs may offer promising possible makers for marker assisted selection.

scholarly journals Temperature-Sensitive Resistance to Wheat streak mosaic virus in CO960333 and KS06HW79 Wheat

Plant Disease ◽  
2013 ◽  
Vol 97 (7) ◽  
pp. 983-987 ◽  
Author(s):  
D. L. Seifers ◽  
T. J. Martin ◽  
S. Haber
Keyword(s):  
Mosaic Virus ◽  
Dna Marker ◽  
Field Trials ◽  
Wheat Breeding ◽  
Wheat Streak Mosaic Virus ◽  
Temperature Sensitive ◽  
Yield Losses ◽  
Breeding Programs ◽  
Sequence Characterized Amplified Region ◽  
Temperature Regimes

Temperature-sensitive resistance (TSR) that can protect against losses to Wheat streak mosaic virus (WSMV) has been described in elite wheat germplasm. A TSR identified in the advanced breeding line CO960333 and its derivative KS06HW79 was examined in growth-chamber tests conducted under constant temperature regimes of 18, 21, and 24°C against an array of WSMV isolates. At 18°C, all tested isolates systemically infected the pedigree parents, while the progeny line CO960333 remained free of symptoms; at 24°C, all lines were susceptible. At the intermediate temperature of 21°C, the TSR of KS06HW79 was effective in contrast to the TSRs of KS03HW12 and ‘RonL’. In field trials conducted in 2011 and 2012, the TSR expressed in KS06HW79 conferred complete protection against yield losses from inoculation with the Sidney 81 isolate of WSMV, while the TSR of RonL conferred similar protection in 2012 but allowed small losses in 2011. The resistance expressed by KS06HW79 is likely not due to the Wsm1 gene because it did not contain the tightly linked J15 sequence-characterized amplified region (SCAR) DNA marker. These findings suggest that KS06HW79 could be an additional TSR source of value to wheat-breeding programs seeking to control losses from WSMV.

Development and characterization of 248 novel microsatellite markers in turbot (Scophthalmus maximus)

Genome ◽  
2007 ◽  
Vol 50 (3) ◽  
pp. 329-332 ◽  
Author(s):  
B.G. Pardo ◽  
C. Fernández ◽  
M. Hermida ◽  
A. Vázquez-López ◽  
M. Pérez ◽  
...  
Keyword(s):  
Microsatellite Markers ◽  
Scophthalmus Maximus ◽  
Marine Aquaculture ◽  
Genomic Libraries ◽  
Polymorphic Microsatellites ◽  
Great Relevance ◽  
Trait Locus ◽  
Turbot Scophthalmus Maximus ◽  
Simple Sequence

The turbot is a flatfish species of great relevance to marine aquaculture in Europe. Only a limited number of microsatellites have been isolated to date in this species. To increase the number of potentially useful mapping markers, we screened simple sequence repeat (SSR) - enriched genomic libraries obtained from several di-, tri-, and tetranucleotide tandem repeat motifs. A total of 248 new polymorphic microsatellites were successfully optimized. The efficiency of the protocol applied (6.4%) was higher than that in other studies of fish that used the same method. Dinucleotide and perfect microsatellites were predominant in this species; the (AC)n motif was the most frequent class of repeat. Polymorphism and structural properties at these loci, together with 30 variable loci previously reported in turbot, were evaluated in 6 wild individuals. The number of alleles per locus ranged from 2 to 10, with an average of 4.046. The microsatellite markers characterized in this study will contribute to the development of the turbot genetic map, which can be used for quantitative trait locus (QTL) identification, marker-assisted selection programs, and other applications to improve its culture.

scholarly journals Development and characterization of polymorphic microsatellite markers in taro (Colocasia esculenta)

Genome ◽  
2002 ◽  
Vol 45 (5) ◽  
pp. 823-832 ◽  
Author(s):  
Emma S Mace ◽  
Ian D Godwin
Keyword(s):  
Genomic Library ◽  
Genome Mapping ◽  
Colocasia Esculenta ◽  
Germplasm Management ◽  
Ca Repeat ◽  
Genomic Libraries ◽  
Expected Size Range ◽  
Polymorphic Microsatellite ◽  
Simple Sequence

Microsatellite-containing sequences were isolated from enriched genomic libraries of taro (Colocasia esculenta (L.) Schott). The sequencing of 269 clones yielded 77 inserts containing repeat motifs. The majority of these (81.7%) were dinucleotide or trinucleotide repeats. The GT/CA repeat motif was the most common, accounting for 42% of all repeat types. From a total of 43 primer pairs designed, 41 produced markers within the expected size range. Sixteen (39%) were polymorphic when screened against a restricted set of taro genotypes from Southeast Asia and Oceania, with an average of 3.2 alleles detected on each locus. These markers represent a useful resource for taro germplasm management, genome mapping, and marker-assisted selection.Key words: Colocasia esculenta, microsatellite-enriched genomic library, simple sequence repeats, germplasm characterization.

scholarly journals Development and characterization of Simple Sequence Repeats (SSRs) markers in durian kura-kura (Durio testudinarius Becc.) using NGS data

2021 ◽  
Vol 948 (1) ◽  
pp. 012082
Author(s):  
Mahat Magandhi ◽  
Sobir ◽  
Yudiwanti W.E. Kusumo ◽  
Sudarmono ◽  
Deden Derajat Matra
Keyword(s):  
Plant Breeding ◽  
Simple Sequence Repeats ◽  
Germplasm Conservation ◽  
Genetic Population ◽  
Breeding Programs ◽  
Ssrs Markers ◽  
Next Generation Sequencing Ngs ◽  
Ngs Data ◽  
Simple Sequence

Abstract Durian Kura-kura (Durio testudinarius Becc.) belongs to the Malvaceae family and is an endemic species of Borneo. Recently, genomic-based next-generation sequencing (NGS) approaches have been carried out for germplasm conservation and plant breeding programs. The NGS technologies allow plant genomes to be sequenced quickly and inexpensively and enable the efficient development of SSR markers through the in-silico approaches. This study aimed to develop and characterize simple sequence repeats (SSRs) from the assembled genome. The 1203929 scaffolds of the assembled genome were produced from the Ray assembler. The SSRs were identified and extracted using the MISA program produced 4315 sequences containing SSRs. The six motif repeats of SSRs were identified; consist of 431 sequences of dinucleotide (the most motif is AT), 3257 sequences of trinucleotide (the most motif is TTA), 516 sequences of tetranucleotide (the most motif is AAAT), 89 sequences of pentanucleotide (the most motif is ATTTT), 18 sequences of hexanucleotide and four sequences of heptanucleotide. The new SSRs markers will be used in further studies of genetic population of D. testudinarius and plant breeding programs.

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