scholarly journals Black rice cultivar from Java Island of Indonesia revealed genomic, proteomic, and anthocyanin nutritional value

2021 ◽  
Author(s):  
Dewi Ratih Tirto Sari ◽  
Atchara Paemanee ◽  
Sittiruk Roytrakul ◽  
James Robert Ketudat Cairns ◽  
Anna Safitri ◽  
...  
Keyword(s):  
Liquid Chromatography ◽  
Anthocyanin Synthesis ◽  
Array Detector ◽  
Rice Cultivars ◽  
Red Rice ◽  
Proteomic Profiling ◽  
Black Rice ◽  
Total Anthocyanin ◽  
Exon 2 ◽  
New Variant

Black rice is considered to be functional food containing anthocyanins as bioactive compounds. This study examined the genomic and proteomic patterns in local black rice from Java Island, Indonesia, with attention to the mechanism of anthocyanin synthesis. Three kinds of black rice from Java Island, including black rice from East Java (BREJ), black rice from Central Java (BRCJ), and black rice from West Java (BRWJ), were studied in comparison to white rice (WREJ) and red rice (RREJ). Genomic profiling was done by simple sequence repeat (SSR) analysis, and sequencing of red coleoptile (Rc) and glycosyltransferase (GT) genes, followed by in silico analysis. Total anthocyanin was investigated by ultra-high performance liquid chromatography- diode array detector (UHPLC-DAD). The proteomic profiles were determined by liquid-chromatography and mass spectrometry of tryptic peptides. The SSR profiles showed a specific band in each black rice variant. The Rc gene exon-2 sequences were similar in the three black rice cultivars. The GT gene sequence was identified as a new variant that correlates with the purple stem, leaf, bran, and whole grain morphology seen exclusively in the BRWJ cultivar. The anthocyanin composition in Java black rice is diverse. The highest cyanidin level was seen in BRWJ and the highest level of peonidin-3-O-glucoside in BREJ. Proteomic profiling of the black rice cultivars demonstrated that the expression of proteins that might be related to the levels of anthocyanin synthesis varied. These studies conclude that the genomic, proteomic and anthocyanins composition of Java black rice cultivars may be used the improvement of their functional nutrition values.

scholarly journals NMR metabolite comparison of local pigmented rice in Yogyakarta

2018 ◽  
Vol 22 (2) ◽  
pp. 68 ◽  
Author(s):  
Dio N. Wijaya ◽  
Febri Adi Susanto ◽  
Yekti Asih Purwestri ◽  
Dyah Ismoyowati ◽  
Tri Rini Nuringtyas
Keyword(s):  
Internal Standard ◽  
Anthocyanin Content ◽  
Rice Cultivars ◽  
Red Rice ◽  
Black Rice ◽  
Score Plot ◽  
Pigmented Rice ◽  
Positive Effects ◽  
Red Color ◽  
Metabolite Profiles

Pigmented rice may have a black or red color due to higher anthocyanin content in its grain. A natural antioxidant, many studies on anthocyanin have reported its positive effects on human health. This fact has spurred the development of pigmented rice as a functional food. This study aimed to compare the metabolite profiles of black and red rice. Three black rice cultivars, namely Melik, Pari Ireng, and Cempo Ireng Sleman, and two red rice cultivars, Inpari 24 and RC 204, were used. After husk removal, grain samples were ground in liquid nitrogen and dried with a freeze dryer. The dried samples were extracted using 50% MeOD4 (in a D2O phosphate buffer pH 6 containing 0.01% TSP as an internal standard). Metabolomic analysis was performed using 500 MHz NMR followed by multivariate data analysis. An orthogonal partial least squares-discriminant analysis (OPLS-DA) model ađer PCA was constructed to discriminate between the five different cultivars. The resulting OPLS-DA score plot revealed a clear separation between black rice and red rice. The metabolites that could influence the separation of red rice and black rice were valine, threonine, alanine, glutamate, galactinol, β-glucose, α-glucose, raffinose, and fumaric acid.

The γ-oryzanol Content of Thai Rice Cultivars and the Effects of Gamma Irradiation on the γ-oryzanol Content of Germinated Thai Market Rice

2020 ◽  
Vol 36 (05) ◽  
pp. 812-818
Author(s):  
Chakorn Chinvongamorn ◽  
Sompong Sansenya
Keyword(s):  
Gamma Irradiation ◽  
Rice Cultivar ◽  
Basic Knowledge ◽  
Rice Cultivars ◽  
Red Rice ◽  
Black Rice ◽  
Gamma Irradiated ◽  
Colored Rice

Thirty-nine Thai rice cultivars, including 17 non-colored rice cultivars and 22 colored rice cultivars (black rice cultivars and red rice cultivars), were investigated for γ-oryzanol content. The γ-oryzanol content of non-colored rice cultivars and colored rice cultivars was found to be 226.40 ± 17.50 μg/g to 411.80 ± 19.80 μg/g and 295.80 ± 15.40 μg/g to 459.80 ± 6.60 μg/g, respectively. Black rice cultivars seem to have higher γ-oryzanol content than do red rice and non-colored rice cultivars. The highest γ-oryzanol levels were identified in Khao Jao Dam Sa-Nit, a black rice cultivar, which contained 1.55 and 2.03 times more γ-oryzanol than Khao Man Bpoo, a red rice cultivar with lowest γ-oryzanol levels, and Khao Gor Kor 57, a non-colored rice cultivar with lowest γ-oryzanol levels, respectively. For further investigation, the effects of gamma irradiation on the γ-oryzanol content of four germinated Thai market rice cultivars, Khao Pathum Thani 1, Khao Gor Kor 31, Khao Gor Kor 41, and Khao Gor Kor 57, was investigated. The highest increase in γ-oryzanol content among the gamma irradiated rice cultivars was identified in Khao Pathum Thani 1 and Khao Gor Kor 31, which had γ-oryzanol levels approximately 1.27 times higher than that of the control rice (non-gamma irradiated rice). Our report contains basic knowledge about creating new rice lines that are rich in highly beneficial nutrients.

scholarly journals Metabolite Profiling Reveals Distinct Modulation of Complex Metabolic Networks in Non-Pigmented, Black, and Red Rice (Oryza sativa L.) Cultivars

Metabolites ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 367
Author(s):  
Tae Jin Kim ◽  
So Yeon Kim ◽  
Young Jin Park ◽  
Sun-Hyung Lim ◽  
Sun-Hwa Ha ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Secondary Metabolites ◽  
Oryza Sativa L ◽  
Carbon Sources ◽  
Rice Cultivars ◽  
Red Rice ◽  
Black Rice ◽  
Primary And Secondary Metabolites ◽  
Pigmented Rice ◽  
Low Levels

Comprehensive profiling of primary and secondary metabolites was performed to understand metabolic differences associated with color formation in pigmented rice (Oryza sativa L.). Overall, 110 metabolites from non-pigmented, black, and red rice cultivars were identified. Black and red rice contained high levels of flavonoids associated with plant color. Black rice also contained high levels of terpenoids (carotenoids, tocopherols, phytosterols, and monoterpenes). The non-pigmented rice contained relatively low levels of secondary metabolites. Multivariate and pathway analyses were performed to data-mine the metabolite profiles. Hierarchical clustering analysis of correlation coefficients revealed metabolite clusters based on nitrogen and carbon sources. These clusters suggested a negative correlation between nitrogen and carbon. Pathway analysis revealed that black rice was rich in carbon-based secondary metabolites, with relatively low levels of primary metabolites compared with other rice cultivars. These data highlight the complex interactions between nitrogen and carbon metabolism of primary and secondary metabolites in rice. For the first time, the relationships and metabolic differences in terpenoid content (monoterpenes, triterpenes, and tetraterpenes) of non-pigmented and pigmented rice cultivars were analyzed. These findings should greatly contribute to the understanding of pigmented rice metabolome and inform breeding programs for new rice cultivars.

scholarly journals Clustering of 18 Local Black Rice Base on Total Anthocyanin

2017 ◽  
Vol 6 (2) ◽  
pp. 47
Author(s):  
Kristamtini Kristamtini ◽  
Endang Wisnu Wiranti
Keyword(s):  
Cardiovascular Disease ◽  
Group Iv ◽  
Anthocyanin Content ◽  
Rice Cultivars ◽  
Black Rice ◽  
Short Life ◽  
Total Anthocyanin ◽  
Group Iii ◽  
Group I ◽  
Total Anthocyanin Content

Black rice has a high anthocyanin content in the pericarp layer, which provides a dark purple color. Anthocyanin<strong> </strong>serve as an antioxidant that control cholesterol level in the blood, prevent anemia, potentially improve the body's resistance to disease, improve damage to liver cells (hepatitis and chirrosis), prevent impaired kidney function, prevent cancer/tumors, slows down antiaging, and prevent atherosclerosis and cardiovascular disease. Exploration results at AIAT Yogyakarta, Indonesia from 2011 to 2014 obtained 18 cultivar of local black rice Indonesia. The names of the rice are related to the color (black, red or purple) formed by anthocyanin deposits in the pericarp layer, seed coat or aleuron. The objective of the study was to classify several types of local black rice from explorations based on the total anthocyanin content. The study was conducted by clustering analyzing the total anthocyanin content of 18 local black rice cultivars in Indonesia. Cluster analysis of total anthocyanin content were done using SAS ver. 9.2. Clustering dendogram shows that there were 4 groups of black rice cultivars based on the total anthocyanin content. Group I consists of Melik black rice, Patalan black rice, Yunianto black rice, Muharjo black rice, Ngatijo black rice, short life of Tugiyo black rice, Andel hitam 1, Jlitheng, and Sragen black rice. Group II consists of Pari ireng, Magelang black hairy rice, Banjarnegara-Wonosobo black rice, and Banjarnegara black rice. Group III consists of NTT black rice, Magelang non hairy black rice, Sembada hitam, and longevity Tugiyo black rice. Group IV consist only one type of black rice namely Cempo ireng. The grouping result indicate the existence of duplicate names among the black rice namely Patalan with Yunianto black rice, and short life Tugiyo with Andel hitam 1 black rice.

Simultaneous Determination of Six Components in Jingzhiguanxin Tablet by High-Performance Liquid Chromatography

2019 ◽  
Vol 15 (2) ◽  
pp. 130-137
Author(s):  
Hui Jiang ◽  
Lianhao Fu ◽  
Yu Wang ◽  
Shaozhi Wang ◽  
Xiaoxu Zhang ◽  
...  
Keyword(s):  
High Performance Liquid Chromatography ◽  
Liquid Chromatography ◽  
High Performance ◽  
Gradient Elution ◽  
Tanshinone Iia ◽  
Array Detector ◽  
Control Analysis ◽  
Active Components ◽  
Quality Control Analysis

Background: Jingzhiguanxin (JZGX) tablet, a traditional Chinese prescription, is commonly used for treating coronary heart disease and angina pectoris in the clinic. There are six active components (Danshensu (DSS), Protocatechuic aldehyde (PD), Paeoniflorin (PF), Ferulic acid (FA), Salvianolic acid B (Sal B) and Tanshinone IIA (TA)) in JZGX tablet. </P><P> Objective: In this paper, a simple and reliable method was used for simultaneous determining the six active components by high-performance liquid chromatography coupled with diode array detector (HPLC-DAD). Methods: These six active components were separated on an Agilent Zorbax Eclipse XDB-C18 column (150 mmx4.6 mm, 5 µm) at 30 °C. Acetonitrile (A), methanol (B) and 0.5% H3PO4 aqueous solution (C) were used as mobile phase for gradient elution. The flow rate was 1 mL/min and the detection wavelengths were set at 280 nm for DSS, PD and Sal B, 230 nm for PF, 320 nm for FA and 270 nm for TA, respectively. Results: All of the six components showed good linearity regressions (r2≥0.9997) in the detected concentration range. The recovery rates and coefficient of variation (CV) for all analytes were 98.66%- 100.18% and 0.75%-1.89%, respectively. This method was successfully applied to simultaneously determine the six components in JZGX tablet from different batches and manufacturers. Conclusion: The validated method can be used in routine quality control analysis of JZGX tablet without any interference.

scholarly journals Phytochemical variability during vegetation of Chamerion angustifolium (L.) Holub genotypes derived from in vitro cultures

2021 ◽  
Author(s):  
Mariola Dreger ◽  
Katarzyna Seidler-Łożykowska ◽  
Milena Szalata ◽  
Artur Adamczak ◽  
Karolina Wielgus
Keyword(s):  
High Performance Liquid Chromatography ◽  
Liquid Chromatography ◽  
High Performance ◽  
Array Detector ◽  
Reproduction Rate ◽  
Full Spectrum ◽  
Breeding Programs ◽  
Chamerion Angustifolium ◽  
Oenothein B

AbstractThe purpose of the study was to evaluate Chamerion angustifolium (L.) Holub genotypes for preliminary selection and further breeding programs aimed at obtaining a suitable industrial form for the pharmaceutical applications. Clonally propagated plants representing 10 genotypes of Ch. angustifolium were regenerated under in vitro conditions, hardened and planted in the field. Studies included an evaluation of shoot proliferation, phytochemical assessment of in vitro and ex vitro plants as well as investigations of intraspecies variability regarding four phenological stages: vegetative, beginning of blooming, full blooming, and green fruit phases. Quantitative and qualitative analyses of bioactive compounds were performed using high-performance liquid chromatography coupled with diode array detector and tandem mass spectrometer (HPLC–DAD–MS/MS) and high-performance liquid chromatography (HPLC) methods. The efficiency of shoot multiplication varied between genotypes from 8.12 to 21.48 shoots per explant. A high reproduction rate (> 20 shoots per explant) was recorded for four lines (PL_45, PL_44, PL_58, DE_2). Plants grown in vitro synthesized oenothein B (11.2–22.3 mg g−1 DW) and caffeic acid derivatives. Plants harvested from field contained the full spectrum of polyphenols characteristic for this species, and oenothein B and quercetin 3-O-glucuronide were the most abundant. The maximal content of oenothein B was determined in the vegetative phase of fireweed, while some flavonoids were found in the highest amount in full blooming phase. The results of analysis of variance indicated significant differences among genotypes in oenothein B, 3-O-caffeoylquinic acid and flavonoids accumulation in four phenological phases. PL_44 plants were characterized by high content of oenothein B and quercetin 3-O-glucuronide as well as a relatively high level of other flavonoids. Based on our phytochemical and micropropagation studies, PL_44 genotype was the best candidate for early selection and further breeding programs.

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