Detection of mammalian-like group a rotavirus in diarrhoeic poultry using RNA-PAGE In Kerala, India

2018 ◽  
Author(s):  
Rinsha Balan ◽  
M. Mini ◽  
P. M. Priya ◽  
Siju Joseph ◽  
Surya Sankar
Keyword(s):  
Gel Electrophoresis ◽  
Polyacrylamide Gel Electrophoresis ◽  
Virus Detection ◽  
Migration Pattern ◽  
Polyacrylamide Gel ◽  
Rota Virus ◽  
Poultry Birds ◽  
Faecal Samples ◽  
Group A ◽  
Different Parts

The present work was conducted to determine the prevalence of rotavirus infection among poultry birds having diarrhoea. A total of 143 faecal samples were collected from different parts of Kerala and screened for the presence of rotavirus using RNA polyacrylamide gel electrophoresis (RNA-PAGE). Out of 143 samples, 5 (3.49%) were found to be positive in RNA PAGE with a migration pattern 4:2:3:2 of a mammalian-like electropherogroup A rotavirus. The study records the first evidence of rota virus detection from avian species in Kerala.

scholarly journals Electropherotypes and G-Types of Group A Rotaviruses Detected in Children with Diarrhea in Lagos, Nigeria

ISRN Virology ◽  
2013 ◽  
Vol 2013 ◽  
pp. 1-5 ◽  
Author(s):  
Christianah Idowu Ayolabi ◽  
David Ajiboye Ojo ◽  
George Enyimah Armah
Keyword(s):  
Gel Electrophoresis ◽  
Polyacrylamide Gel Electrophoresis ◽  
Migration Pattern ◽  
Genomic Diversity ◽  
Rt Pcr ◽  
Group A Rotaviruses ◽  
Group A ◽  
Stool Samples ◽  
Health Care Centers ◽  
Virus Isolates

Approximately over 500,000 children die annually due to severe dehydrating diarrhea caused by rotaviruses. This work investigated rotavirus infection among children less than 5 years with diarrhea in Lagos and determined the circulating electropherotypes and genotypes of the virus isolates. Three hundred and two (n=302) stool samples from children below 60 months were collected from different hospitals and health care centers in Lagos and subjected to enzyme immunoassay (EIA) to determine the presence of Group A rotavirus, RT-PCR to determine the G-types, and polyacrylamide gel electrophoresis (PAGE) to determine the electropherotypes. The results show that 60.3% of the samples showed distinct rotavirus RNA migration pattern, having long electropherotypes (55.3%) of seven variations dominating over the short electropherotypes (44.5%). Six different G-types were detected (G1, G2, G3, G4, G9, and G12). Serotypes G1 and G12 showed long electropherotypic pattern while G2, G3, and G9 exhibited either short or long electropherotype. All G4 detected show short electropherotypic pattern. In conclusion, information on the genomic diversity and RNA electropherotypes of rotaviruses detected in children with diarrhea in Lagos is reported in this study.

scholarly journals MOLECULAR EPIDEMIOLOGICAL STUDIES ON ROTAVIRUS INFECTION CAUSING SEVERE DIARRHEA IN HUMAN, ANIMALS AND POULTRY

2013 ◽  
Vol 9 (2) ◽  
pp. 167-175 ◽  
Author(s):  
MN Alam ◽  
MM Alam ◽  
A Nahar ◽  
N Kobayashi
Keyword(s):  
Gel Electrophoresis ◽  
Polyacrylamide Gel Electrophoresis ◽  
Winter Season ◽  
Epidemiological Studies ◽  
Polyacrylamide Gel ◽  
Fecal Samples ◽  
Rotavirus Infection ◽  
Severe Diarrhea ◽  
Human Rotavirus ◽  
Group A

The epidemiology of rotavirus infection in human, calves, sheep, goats and poultry were studied. Among total  of 800 collected fecal samples , 320 samples from human, 125 samples from calves, 82 samples from sheep, 7 samples from goats, 267 samples from poultry were collected from July 2010 to May 2011 and examined by Polyacrylamide Gel Electrophoresis and Silver Staining (PAGE-SS) technique for the detection of presence of rotavirus dsRNA. Human rotavirus was detected 10.94 % (35/320) in diarrhoeic fecal samples. The highest prevalence was recorded in September 33.33% and the lowest in May 4.54%. The prevalence of rotavirus infections was 33.33% in autumn (September), 11.69% in late autumn (October-November), 9.6% in winter (December-January), 9.72% in spring (February- March), 6.12% in summer (April-May) season in diarrhoeic samples indicated the presence of rotavirus in human round the year in Bangladesh and as such no marked seasonal variation in rotavirus infection in human. No calves, sheep and goat fecal sample was found positive for rotavirus on PAGE-SS technique. During the study period, 267 faecal samples (diarrhoeic and nondiarrhoeic) of chicken (from one day to one month of age) were tested and only one was found positive on PAGE-SS technique for rotavirus infection (0.38%; 1/267). The positive cases were found in samples collected in winter season from layer chicks aged 10 days. The migration patterns of detected positive strains were not similar on polyacrylamide gel electrophoresis and their migration speed was different types. Five electropherotypes were determined among 35 human rotavirus positive samples. All the electropherotypes were under group A and long pattern. The genome migration of avian rotavirus was distinct from human types and under group D and long pattern. In the present study, it was not investigated that bacteria, parasite or any other viruses which might be responsible for development of diarrhoea.DOI: http://dx.doi.org/10.3329/bjvm.v9i2.13473

Frankia diversity in an alder stand as estimated by sodium dodecyl sulfate – polyacrylamide gel electrophoresis of whole-cell proteins

1983 ◽  
Vol 61 (11) ◽  
pp. 2919-2923 ◽  
Author(s):  
David R. Benson ◽  
Deborah Hanna
Keyword(s):  
Sodium Dodecyl Sulfate ◽  
Gel Electrophoresis ◽  
Polyacrylamide Gel Electrophoresis ◽  
Sodium Dodecyl ◽  
Polyacrylamide Gel ◽  
Protein Patterns ◽  
Whole Cell ◽  
Dodecyl Sulfate ◽  
Group A ◽  
Utilization Patterns

Procedures for estimating the diversity of Frankia isolates are described. Forty-three alder isolates were separated into six groups by comparing protein patterns obtained during sodium dodecyl sulfate – polyacrylamide gel electrophoresis (SDS–PAGE) of whole-cell lysates. Thirty-five of the strains comprised group A and were indistinguishable from one another. Four strains were quite similar to a Comptonia peregrina isolate (CpI1) and were included in group C. Group D had two members and groups B, E, and F each had one member. The groupings were confirmed by hyphal morphology, colony appearance, and carbon source utilization patterns.

Rotavirus electropherotypes in Malaysian children

1992 ◽  
Vol 38 (9) ◽  
pp. 996-999 ◽  
Author(s):  
K. L. Yap ◽  
Y. H. Wong ◽  
C. M. Khor ◽  
Y. E. Ooi
Keyword(s):  
Molecular Epidemiology ◽  
Gel Electrophoresis ◽  
Polyacrylamide Gel Electrophoresis ◽  
Older Children ◽  
Migration Patterns ◽  
Faecal Samples ◽  
Group A Rotaviruses ◽  
Group A ◽  
Short Pattern ◽  
Predominant Strain

A 12-month study was carried out on the molecular epidemiology of rotavirus in urban and suburban Malaysian children. Analysis of faecal samples from 973 hospitalized diarrhoeic children by polyacrylamide gel electrophoresis detected 268 rotaviruses (28%). All isolates were group A rotaviruses, which produced 22 electropherotypes: 16 (91.5%) with long RNA migration patterns and 6 (8.5%) with short patterns. One of the long-pattern electropherotypes was the predominant strain (71.1% of the total electropherotypes) isolated during this study. Although 3 other strains were detected sporadically over the study period, 16 others were present only during the first 7 months and 2 others were confined to the last 5 months. Long- and short-pattern electropherotypes were found to co-circulate extensively. There was a significant association of short-pattern electropherotypes with infection in older children. In addition, the prevalence of vomiting and mean duration of diarrhoea were significantly associated with different electropherotypes. Key words: rotavirus electropherotypes.

Ultrastructural localization of specific nucleoprotein fractions

1978 ◽  
Vol 36 (2) ◽  
pp. 204-205
Author(s):  
G. L. Brown
Keyword(s):  
Gel Electrophoresis ◽  
Mouse Liver ◽  
Polyacrylamide Gel Electrophoresis ◽  
Ultrastructural Localization ◽  
Polyacrylamide Gel ◽  
Acid Extraction ◽  
Acid Solutions ◽  
Low Salt ◽  
Liver Nuclei ◽  
Phosphate Groups

Bismuth (Bi) stains nucleoproteins (NPs) by interacting with available amino and primary phosphate groups. These two staining mechanisms are distinguishable by glutaraldehyde crosslinking (Fig. 1,2).Isolated mouse liver nuclei, extracted with salt and acid solutions, fixed in either formaldehyde (form.) or gl utaraldehyde (glut.) and stained with Bi, were viewed to determine the effect of the extractions on Bi stainina. Solubilized NPs were analyzed by SDS-polyacrylamide gel electrophoresis.Extraction with 0.14 M salt does not change the Bi staining characteristics (Fig. 3). 0.34 M salt reduces nucleolar (Nu) staining but has no effect on interchromatinic (IC) staining (Fig. 4). Proteins responsible for Nu and glut.- insensitive IC staining are removed when nuclei are extracted with 0.6 M salt (Fig. 5, 6). Low salt and acid extraction prevents Bi-Nu staining but has no effect on IC staining (Fig. 7). When nuclei are extracted with 0.6 M salt followed by low salt and acid, all Bi-staining components are removed (Fig. 8).

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