scholarly journals Bacterial Seed Endophytes of the Holoparasitic Cistanche Armena and C. Phelypaea (Orobanchaceae) from Saline Habitats: Semi-Deserts vs Flooded Coasts

2021 ◽  
Author(s):  
Kristine Petrosyan ◽  
Renata Piwowarczyk ◽  
Karolina Ruraż ◽  
Jaco Vangronsveld ◽  
Wiesław Kaca
Keyword(s):  
Plant Species ◽  
Environmental Conditions ◽  
Bacterial Communities ◽  
Abiotic Stresses ◽  
Water Status ◽  
Bacterial Species ◽  
Natural Habitat ◽  
Molecular Techniques ◽  
Pgp Traits ◽  
Saline Habitats

Abstract The current study compares the bacterial seed endomicrobiomes of the endemic holoparasitic plant species Cistanche armena and C. phelypaea. Both species thrive in habitats that are saline but with a very different soil water status. The study aims to uncover how environmental conditions influence the diversity of the bacterial communities of seeds of these holoparasites and also highlights the physiological activities, several enzymatic and PGP traits of culturable endophytes that may support the tolerance of their hosts to abiotic stresses. A combination of culture-dependent and molecular techniques was employed for the identification of the seed endomicrobiome (culturable and unculturable). From the seeds of both parasitic plant species closely related strains were isolated. Sixteen phyla, 323 genera and 710 bacterial species were identified, mainly Gram negative, halotolerant bacteria with an environmental origin. Most of the isolates were endospore forming, halotolerant and alkaliphile Bacillus spp. which suggests that the endophytic bacteria of C. armena and C. phelypaea seeds possess traits that are correlated with the natural habitat of their hosts. The Paenibacillus strains from both plant species demonstrate similar biochemical traits. Although the seed endophytic microbiomes of C. armena and C. phelypaea contain a high number of common bacterial taxa, also remarkable differences exist. We demonstrated that the diversity of the bacterial communities is related to the environmental conditions, water status or abiotic stresses.

scholarly journals Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

mSystems ◽  
2018 ◽  
Vol 3 (1) ◽  
Author(s):  
Collin M. Timm ◽  
Kelsey R. Carter ◽  
Alyssa A. Carrell ◽  
Se-Ran Jun ◽  
Sara S. Jawdy ◽  
...  
Keyword(s):  
Plant Growth ◽  
Environmental Conditions ◽  
Bacterial Communities ◽  
Abiotic Stresses ◽  
Growth Conditions ◽  
Plant Host ◽  
Associated Bacteria ◽  
Poplar Trees

The identification of a common “stress microbiome” indicates tightly controlled relationships between the plant host and bacterial associates and a conserved structure in bacterial communities associated with poplar trees under different growth conditions. The ability of the microbiome to buffer the plant from extreme environmental conditions coupled with the conserved stress microbiome observed in this study suggests an opportunity for future efforts aimed at predictably modulating the microbiome to optimize plant growth.

scholarly journals Functions of silicon in plant drought stress responses

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Min Wang ◽  
Ruirui Wang ◽  
Luis Alejandro Jose Mur ◽  
Jianyun Ruan ◽  
Qirong Shen ◽  
...  
Keyword(s):  
Drought Stress ◽  
Water Balance ◽  
Plant Species ◽  
Stress Responses ◽  
Environmental Conditions ◽  
Water Status ◽  
Stress Conditions ◽  
Plant Water Status ◽  
Future Research ◽  
Plant Water

AbstractSilicon (Si), the second most abundant element in Earth’s crust, exerts beneficial effects on the growth and productivity of a variety of plant species under various environmental conditions. However, the benefits of Si and its importance to plants are controversial due to differences among the species, genotypes, and the environmental conditions. Although Si has been widely reported to alleviate plant drought stress in both the Si-accumulating and nonaccumulating plants, the underlying mechanisms through which Si improves plant water status and maintains water balance remain unclear. The aim of this review is to summarize the morphoanatomical, physiological, biochemical, and molecular processes that are involved in plant water status that are regulated by Si in response to drought stress, especially the integrated modulation of Si-triggered drought stress responses in Si accumulators and intermediate- and excluder-type plants. The key mechanisms influencing the ability of Si to mitigate the effects of drought stress include enhancing water uptake and transport, regulating stomatal behavior and transpirational water loss, accumulating solutes and osmoregulatory substances, and inducing plant defense- associated with signaling events, consequently maintaining whole-plant water balance. This study evaluates the ability of Si to maintain water balance under drought stress conditions and suggests future research that is needed to implement the use of Si in agriculture. Considering the complex relationships between Si and different plant species, genotypes, and the environment, detailed studies are needed to understand the interactions between Si and plant responses under stress conditions.

Phylogenetic analysis of bacterial populations in waters of the former Texcoco Lake, Mexico

2004 ◽  
Vol 50 (12) ◽  
pp. 1049-1059 ◽  
Author(s):  
Janet Jan-Roblero ◽  
Xochitl Magos ◽  
Luis Fernández ◽  
César Hernández-Rodríguez ◽  
Sylvie Le Borgne
Keyword(s):  
16S Rdna ◽  
Bacterial Communities ◽  
Soda Lakes ◽  
Phylogenetic Analyses ◽  
Bacterial Species ◽  
Intergenic Spacer ◽  
Molecular Techniques ◽  
Preliminary Evaluation ◽  
Gram Positive ◽  
Gram Positive Bacteria

Molecular techniques were used to compare the compositions of the bacterial communities of the 2 following lagoons from the former soda Texcoco Lake, Mexico: the restored Facultativa lagoon and the Nabor Carrillo lagoon. Ribosomal intergenic spacer analysis (RISA) revealed that bacterial communities of the 2 lagoons were different and presented a relatively low diversity. Clone libraries of 16S rDNA genes were constructed, and significant phylotypes were distinguished by restriction fragment length polymorphism (RFLP). A representative clone from each phylotype was partially sequenced. Molecular identification and phylogenetic analyses based on ribosomal sequences revealed that the Facultativa lagoon harbored mainly γ- and β-Proteobacteria, low G+C Gram-positive bacteria, and several members of the Halobacteriaceae family of archaea. The Nabor Carrillo lagoon mainly included typical halophilic and alkaliphilic low G+C Gram-positive bacteria, γ-Proteobacteria, and β-Proteobacteria similar to those found in other soda lakes. Several probably noncultured new bacterial species were detected. Three strains were isolated from the Nabor Carrillo lagoon, their partial 16S rDNA sequences were obtained. On this basis, they were identified as Halomonas magadiensis (H1), Halomonas eurihalina (H2), and Staphylococcus sciuri (H3). This is the first study that uses molecular techniques to investigate potential genetic diversity in the Texcoco lakes. In this preliminary evaluation, we infer the presence of alkalophilic, halophilic, or haloalkaliphilic bacteria potentially useful for biotechnology.Key words: bacterial diversity, 16S rDNA gene, soda lakes, former soda Texcoco Lake, Mexico, alkaliphiles, halophiles, haloalkaliphiles.

scholarly journals Links between Plant and Rhizoplane Bacterial Communities in Grassland Soils, Characterized Using Molecular Techniques

2005 ◽  
Vol 71 (11) ◽  
pp. 6784-6792 ◽  
Author(s):  
Naoise Nunan ◽  
Timothy J. Daniell ◽  
Brajesh K. Singh ◽  
Artemis Papert ◽  
James W. McNicol ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Community Composition ◽  
Plant Species ◽  
Bacterial Communities ◽  
Rhizosphere Soil ◽  
Bacterial Community Composition ◽  
Molecular Techniques ◽  
16S Rrna Genes ◽  
Rrna Genes ◽  
Grassland Soils

ABSTRACT Molecular analysis of grassland rhizosphere soil has demonstrated complex and diverse bacterial communities, with resultant difficulties in detecting links between plant and bacterial communities. These studies have, however, analyzed “bulk” rhizosphere soil, rather than rhizoplane communities, which interact most closely with plants through utilization of root exudates. The aim of this study was to test the hypothesis that plant species was a major driver for bacterial rhizoplane community composition on individual plant roots. DNA extracted from individual roots was used to determine plant identity, by analysis of the plastid tRNA leucine (trnL) UAA gene intron, and plant-related bacterial communities. Bacterial communities were characterized by analysis of PCR-amplified 16S rRNA genes using two fingerprinting methods: terminal restriction fragment length polymorphisms (T-RFLP) and denaturing gradient gel electrophoresis (DGGE). Links between plant and bacterial rhizoplane communities could not be detected by visual examination of T-RFLP patterns or DGGE banding profiles. Statistical analysis of fingerprint patterns did not reveal a relationship between bacterial community composition and plant species but did demonstrate an influence of plant community composition. The data also indicated that topography and other, uncharacterized, environmental factors are important in driving bacterial community composition in grassland soils. T-RFLP had greater potential resolving power than DGGE, but findings from the two methods were not significantly different.

scholarly journals Comparison of Soil Bacterial Communities in Rhizospheres of Three Plant Species and the Interspaces in an Arid Grassland

2002 ◽  
Vol 68 (4) ◽  
pp. 1854-1863 ◽  
Author(s):  
Cheryl R. Kuske ◽  
Lawrence O. Ticknor ◽  
Mark E. Miller ◽  
John M. Dunbar ◽  
Jody A. Davis ◽  
...  
Keyword(s):  
Bacterial Community ◽  
Plant Species ◽  
Environmental Conditions ◽  
Bacterial Communities ◽  
Soil Depth ◽  
Plant Cover ◽  
16S Rrna Genes ◽  
Rrna Genes ◽  
Soil Dna ◽  
Total Bacterial Community

ABSTRACT Soil bacteria are important contributors to primary productivity and nutrient cycling in arid land ecosystems, and their populations may be greatly affected by changes in environmental conditions. In parallel studies, the composition of the total bacterial community and of members of the Acidobacterium division were assessed in arid grassland soils using terminal restriction fragment length polymorphism (TRF, also known as T-RFLP) analysis of 16S rRNA genes amplified from soil DNA. Bacterial communities associated with the rhizospheres of the native bunchgrasses Stipa hymenoides and Hilaria jamesii, the invading annual grass Bromus tectorum, and the interspaces colonized by cyanobacterial soil crusts were compared at three depths. When used in a replicated field-scale study, TRF analysis was useful for identifying broad-scale, consistent differences in the bacterial communities in different soil locations, over the natural microscale heterogeneity of the soil. The compositions of the total bacterial community and Acidobacterium division in the soil crust interspaces were significantly different from those of the plant rhizospheres. Major differences were also observed in the rhizospheres of the three plant species and were most apparent with analysis of the Acidobacterium division. The total bacterial community and the Acidobacterium division bacteria were affected by soil depth in both the interspaces and plant rhizospheres. This study provides a baseline for monitoring bacterial community structure and dynamics with changes in plant cover and environmental conditions in the arid grasslands.

scholarly journals Family graveyards form underappreciated local plant diversity hotspots in China's agricultural landscapes

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Cheng Gong ◽  
Liangtao Li ◽  
Jan C. Axmarcher ◽  
Zhenrong Yu ◽  
Yunhui Liu
Keyword(s):  
Species Richness ◽  
Plant Species ◽  
Natural Habitat ◽  
Plant Species Richness ◽  
Agricultural Landscapes ◽  
Natural Habitats ◽  
Landscape Features ◽  
Habitat Islands ◽  
Local Plant ◽  
Ecological Functioning

AbstractIn the intensively farmed, homogenous agricultural landscape of the North China Plain, family graveyards form distinct cultural landscape features. In addition to their cultural value, these graveyards represent semi-natural habitat islands whose potential roles in biodiversity conservation and ecological functioning has remained poorly understood. In this study, we investigated plant species richness on 199 family graveyards of different ages and sizes. In accordance with biogeography theory, both overall and insect-pollinated plant species richness increased with area and age of graveyards. Even small graveyards show a strong potential for conserving local plant richness, and a mosaic of both large and small family graveyards could play an important role in the conservation of farmland biodiversity and related ecosystem functions. The launch of agri-environmental measures that conserve and create semi-natural habitats, in turn benefitting agricultural biodiversity and ecological functioning, has proven difficult in China due to the shortage of dispensable arable land. Given the great value of family graveyards as semi-natural habitats reflected in our study, we propose to focus preliminary efforts on conserving these landscape features as existing, widespread and culturally important semi-natural habitat islands. This would represent an effective, complementary policy to a subsequent re-establishment of other semi-natural habitats for the conservation of biodiversity and ecological functioning in agricultural landscapes.

Integration of culture-dependent and independent methods provides a more coherent picture of the pig gut microbiome

2020 ◽  
Vol 96 (3) ◽  
Author(s):  
Gavin J Fenske ◽  
Sudeep Ghimire ◽  
Linto Antony ◽  
Jane Christopher-Hennings ◽  
Joy Scaria
Keyword(s):  
Bacterial Communities ◽  
Bacterial Species ◽  
Shotgun Metagenomics ◽  
Culture Techniques ◽  
Microbiome Composition ◽  
Culture Independent ◽  
Health And Disease ◽  
The Media ◽  
And Function ◽  
Culture Dependent

ABSTRACT Bacterial communities resident in the hindgut of pigs, have profound impacts on health and disease. Investigations into the pig microbiome have utilized either culture-dependent, or far more commonly, culture-independent techniques using next generation sequencing. We contend that a combination of both approaches generates a more coherent view of microbiome composition. In this study, we surveyed the microbiome of Tamworth breed and feral pigs through the integration high throughput culturing and shotgun metagenomics. A single culture medium was used for culturing. Selective screens were added to the media to increase culture diversity. In total, 46 distinct bacterial species were isolated from the Tamworth and feral samples. Selective screens successfully shifted the diversity of bacteria on agar plates. Tamworth pigs are highly dominated by Bacteroidetes primarily composed of the genus Prevotella whereas feral samples were more diverse with almost equal proportions of Firmicutes and Bacteroidetes. The combination of metagenomics and culture techniques facilitated a greater retrieval of annotated genes than either method alone. The single medium based pig microbiota library we report is a resource to better understand pig gut microbial ecology and function. It allows for assemblage of defined bacterial communities for studies in bioreactors or germfree animal models.

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