scholarly journals Origin and Control of Chemoselectivity in Cytochrome c-Catalyzed Carbene Transfer into Si–H and N–H bonds

Author(s):  
Marc Garcia-Borràs ◽  
S. B. Jennifer Kan ◽  
Russell D. Lewis ◽  
Allison Tang ◽  
Gonzalo Jiménez-Osés ◽  
...  

<div><div><div><p>A cytochrome c heme protein was recently engineered to catalyze the formation of carbon–silicon bonds via carbene insertion into Si–H bonds, a reaction that was not previously known to be catalyzed by a protein. High chemoselectivity towards C–Si bond formation over competing C–N bond formation was achieved, although this trait was not screened for during directed evolution. Using computational and experimental tools, we now establish that activity and chemoselectivity are modulated by conformational dynamics of a protein loop that covers the substrate access to the iron-carbene active species. Mutagenesis of residues computationally predicted to control the loop conformation altered the protein’s chemoselectivity from preferred silylation to preferred amination of a substrate containing both N–H and Si–H functionalities. We demonstrate that information on protein structure and conformational dynamics, combined with knowledge of mechanism, leads to understanding of how non-natural and selective chemical transformations can be introduced into the biological world.</p></div></div></div>

2021 ◽  
Author(s):  
Marc Garcia-Borràs ◽  
S. B. Jennifer Kan ◽  
Russell D. Lewis ◽  
Allison Tang ◽  
Gonzalo Jiménez-Osés ◽  
...  

<div><div><div><p>A cytochrome c heme protein was recently engineered to catalyze the formation of carbon–silicon bonds via carbene insertion into Si–H bonds, a reaction that was not previously known to be catalyzed by a protein. High chemoselectivity towards C–Si bond formation over competing C–N bond formation was achieved, although this trait was not screened for during directed evolution. Using computational and experimental tools, we now establish that activity and chemoselectivity are modulated by conformational dynamics of a protein loop that covers the substrate access to the iron-carbene active species. Mutagenesis of residues computationally predicted to control the loop conformation altered the protein’s chemoselectivity from preferred silylation to preferred amination of a substrate containing both N–H and Si–H functionalities. We demonstrate that information on protein structure and conformational dynamics, combined with knowledge of mechanism, leads to understanding of how non-natural and selective chemical transformations can be introduced into the biological world.</p></div></div></div>


2019 ◽  
Vol 377 (6) ◽  
Author(s):  
Samson Afewerki ◽  
Armando Córdova

AbstractThe concept of merging enamine activation catalysis with transition metal catalysis is an important strategy, which allows for selective chemical transformations not accessible without this combination. The amine catalyst activates the carbonyl compounds through the formation of a reactive nucleophilic enamine intermediate and, in parallel, the transition metal activates a wide range of functionalities such as allylic substrates through the formation of reactive electrophilic π-allyl-metal complex. Since the first report of this strategy in 2006, considerable effort has been devoted to the successful advancement of this technology. In this chapter, these findings are highlighted and discussed.


Author(s):  
Marc Garcia-Borràs ◽  
S. B. Jennifer Kan ◽  
Russell D. Lewis ◽  
Allison Tang ◽  
Gonzalo Jimenez-Osés ◽  
...  

1963 ◽  
Vol 41 (1) ◽  
pp. 2215-2220 ◽  
Author(s):  
R. R. J. Chaffee ◽  
W. W. Mayhew ◽  
M. Drebin ◽  
Y. Cassuto

Effects on oxygen consumption of continuous intravenous injection of various doses of L-noradrenaline were measured in anesthetized chickens acclimated to 1 °C for 3 months, and in controls. No effects were produced in either and it is concluded that noradrenaline is not a calorigenic mediator in cold-acclimated chickens. Liver succinoxidase and liver microsomal pyridine nucleotide-cytochrome c reductases of cold-acclimated and control sparrows were assayed, and there were no cold-induced differences. Since small cold-acclimated mammals show elevation of these liver enzyme systems, the findings indicate that the chemical basis of non-shivering thermogenesis (if this phenomenon is present at all) may involve different mechanisms in birds and mammals. Organ weights were measured, and it was found that in the sparrow, as in small rodents, the kidney and heart become enlarged in response to cold, perhaps indicating a convergent adaptation in these two diverse homoeotherms. Changes in the thickness and changes in color of the pectoral muscles which were observed in the cold-acclimated sparrows are discussed in relation to their possible roles in shivering thermogenesis.


Materials ◽  
2019 ◽  
Vol 12 (5) ◽  
pp. 688 ◽  
Author(s):  
Mariya Edeleva ◽  
Gerard Audran ◽  
Sylvain Marque ◽  
Elena Bagryanskaya

Because alkoxyamines are employed in a number of important applications, such as nitroxide-mediated polymerization, radical chemistry, redox chemistry, and catalysis, research into their reactivity is especially important. Typically, the rate of alkoxyamine homolysis is strongly dependent on temperature. Nonetheless, thermal regulation of such reactions is not always optimal. This review describes various ways to reversibly change the rate of C–ON bond homolysis of alkoxyamines at constant temperature. The major methods influencing C–ON bond homolysis without alteration of temperature are protonation of functional groups in an alkoxyamine, formation of metal–alkoxyamine complexes, and chemical transformation of alkoxyamines. Depending on the structure of an alkoxyamine, these approaches can have a significant effect on the homolysis rate constant, by a factor of up to 30, and can shorten the half-lifetime from days to seconds. These methods open new prospects for the application of alkoxyamines in biology and increase the safety of (and control over) the nitroxide-mediated polymerization method.


2002 ◽  
Vol 117 (9) ◽  
pp. 4594-4601 ◽  
Author(s):  
V. V. Ponkratov ◽  
J. Friedrich ◽  
J. M. Vanderkooi

1971 ◽  
Vol 49 (21) ◽  
pp. 3429-3437 ◽  
Author(s):  
A. Maradufu ◽  
G. M. Cree ◽  
A. S. Perlin

The stereochemistry of dehydrogenation of the primary carbinol group of D-galactose by D-galactose oxidase has been determined. Using D-galactose-6-d and methyl β-D-galactopyranoside-6-d, it has been established that the reaction involves removal of the pro-S 6-hydrogen atom. This conclusion is based on product analysis, and on the relative impact of the deuterium isotope effect on oxidation rates of substrates having different R:S deuteration patterns. The absolute configurations at C-6 of these substrates have been determined by selective chemical transformations to products of known configuration. The rotational conformation of the 6-carbinol group of D-galactose and its possible relationship to the specificity of the enzyme are discussed, as well as the stereochemistry of reductive deuteration of aldehydo sugar derivatives.


2017 ◽  
Vol 15 (22) ◽  
pp. 4811-4815 ◽  
Author(s):  
Henry P. Pepper ◽  
Hiu C. Lam ◽  
Jonathan H. George

The marine sponge meroterpenoid capillobenzopyranol has been converted into the co-isolated verrubenzospirolactone using simple and selective chemical transformations.


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