scholarly journals Phosphorene–Fullerene Nanostructures: A First-Principles Study

2021 ◽  
Author(s):  
Diego Cortes-Arriagada ◽  
Daniela E. Ortega
Keyword(s):  
Active Sites ◽  
Short Range ◽  
Density Functional ◽  
Dipole Moments ◽  
Molecular Size ◽  
Bandgap Engineering ◽  
Donor Acceptor ◽  
The Stability ◽  
Strong Repulsion ◽  
Intermolecular Distances

Hybrid materials formed by carbon fullerenes and layered materials have emerged due to their advantages for several technological applications, and phosphorene arises as a promising two-dimensional semiconductor for C60 adsorption. However, the properties of phosphorenefullerene hybrids remain mainly unexplored. In this work, we employed density functional theory to obtain structures, adsorption energies, electronic/optical properties, binding (AIM, NBO), and energy decomposition analyses (ALMO-EDA) of nanostructures formed by phosphorene and fullerenes (C24 to C70). We find fullerenes form covalent and non-covalent complexes with phosphorene depending on the molecular size, showing remarkable stability even in solution. Two classes of covalent complexes arise by cycloaddition-like reactions: the first class, where short-range effects (charge-transfer and polarization) determines the stability; and the second one, where short-range effects decay to avoid steric repulsion, and balanced longrange forces (electrostatics and dispersion) favors the stability. Otherwise, high-size fullerenes (C50 to C70) only form non-covalent complexes due to strong repulsion at shorter intermolecular distances and lack of dissociation barriers. In terms of electronic properties, fullerenes act as mild p-dopants for phosphorene, increasing its polar character and ability to acquire induced dipole moments (polarizability). Also, small energy-bandgap fullerenes (<0.8 eV) largely increase the phosphorene metallic character. We also note fullerenes retain their donor/acceptor properties upon adsorption, acting as active sites for orbital-controlled interactions and maximizing the phosphorene light absorbance at the UV-Vis region. Finally, we strongly believe our study will inspire future experimental/theoretical studies focused on phosphorene-fullerene uses for storage, anode materials, sensing, phosphorene bandgap engineering, and optoelectronics.<br>

scholarly journals Phosphorene–Fullerene Nanostructures: A First-Principles Study

2021 ◽  
Author(s):  
Diego Cortes-Arriagada ◽  
Daniela E. Ortega
Keyword(s):  
Active Sites ◽  
Short Range ◽  
Density Functional ◽  
Dipole Moments ◽  
Molecular Size ◽  
Bandgap Engineering ◽  
Donor Acceptor ◽  
The Stability ◽  
Strong Repulsion ◽  
Intermolecular Distances

Hybrid materials formed by carbon fullerenes and layered materials have emerged due to their advantages for several technological applications, and phosphorene arises as a promising two-dimensional semiconductor for C60 adsorption. However, the properties of phosphorenefullerene hybrids remain mainly unexplored. In this work, we employed density functional theory to obtain structures, adsorption energies, electronic/optical properties, binding (AIM, NBO), and energy decomposition analyses (ALMO-EDA) of nanostructures formed by phosphorene and fullerenes (C24 to C70). We find fullerenes form covalent and non-covalent complexes with phosphorene depending on the molecular size, showing remarkable stability even in solution. Two classes of covalent complexes arise by cycloaddition-like reactions: the first class, where short-range effects (charge-transfer and polarization) determines the stability; and the second one, where short-range effects decay to avoid steric repulsion, and balanced longrange forces (electrostatics and dispersion) favors the stability. Otherwise, high-size fullerenes (C50 to C70) only form non-covalent complexes due to strong repulsion at shorter intermolecular distances and lack of dissociation barriers. In terms of electronic properties, fullerenes act as mild p-dopants for phosphorene, increasing its polar character and ability to acquire induced dipole moments (polarizability). Also, small energy-bandgap fullerenes (<0.8 eV) largely increase the phosphorene metallic character. We also note fullerenes retain their donor/acceptor properties upon adsorption, acting as active sites for orbital-controlled interactions and maximizing the phosphorene light absorbance at the UV-Vis region. Finally, we strongly believe our study will inspire future experimental/theoretical studies focused on phosphorene-fullerene uses for storage, anode materials, sensing, phosphorene bandgap engineering, and optoelectronics.<br>

scholarly journals Phosphorene–Fullerene Nanostructures: A First-Principles Study

2021 ◽  
Author(s):  
Diego Cortes-Arriagada ◽  
Daniela E. Ortega
Keyword(s):  
Active Sites ◽  
Short Range ◽  
Density Functional ◽  
Dipole Moments ◽  
Molecular Size ◽  
Bandgap Engineering ◽  
Donor Acceptor ◽  
The Stability ◽  
Strong Repulsion ◽  
Intermolecular Distances

Hybrid materials formed by carbon fullerenes and layered materials have emerged due to their advantages for several technological applications, and phosphorene arises as a promising two-dimensional semiconductor for C60 adsorption. However, the properties of phosphorenefullerene hybrids remain mainly unexplored. In this work, we employed density functional theory to obtain structures, adsorption energies, electronic/optical properties, binding (AIM, NBO), and energy decomposition analyses (ALMO-EDA) of nanostructures formed by phosphorene and fullerenes (C24 to C70). We find fullerenes form covalent and non-covalent complexes with phosphorene depending on the molecular size, showing remarkable stability even in solution. Two classes of covalent complexes arise by cycloaddition-like reactions: the first class, where short-range effects (charge-transfer and polarization) determines the stability; and the second one, where short-range effects decay to avoid steric repulsion, and balanced longrange forces (electrostatics and dispersion) favors the stability. Otherwise, high-size fullerenes (C50 to C70) only form non-covalent complexes due to strong repulsion at shorter intermolecular distances and lack of dissociation barriers. In terms of electronic properties, fullerenes act as mild p-dopants for phosphorene, increasing its polar character and ability to acquire induced dipole moments (polarizability). Also, small energy-bandgap fullerenes (<0.8 eV) largely increase the phosphorene metallic character. We also note fullerenes retain their donor/acceptor properties upon adsorption, acting as active sites for orbital-controlled interactions and maximizing the phosphorene light absorbance at the UV-Vis region. Finally, we strongly believe our study will inspire future experimental/theoretical studies focused on phosphorene-fullerene uses for storage, anode materials, sensing, phosphorene bandgap engineering, and optoelectronics.<br>

scholarly journals Assessing the stability of Pd-exchanged sites in zeolites with the aid of a high throughput quantum chemistry workflow

2021 ◽  
Author(s):  
Hassan Aljama ◽  
Martin Head-Gordon ◽  
Alexis Bell
Keyword(s):  
High Throughput ◽  
High Throughput Screening ◽  
Active Sites ◽  
Density Functional ◽  
Functional Materials ◽  
No Adsorption ◽  
Functional Theory ◽  
Wide Range ◽  
The Stability ◽  
Shed Light

Abstract Cation exchanged-zeolites are functional materials with a wide range of applications from catalysis to sorbents. They present a challenge for computational studies using density functional theory due to the numerous possible active sites. From Al configuration, to placement of extra framework cation(s), to potentially different oxidation states of the cation, accounting for all these possibilities is not trivial. To make the number of calculations more tractable, most studies focus on a few active sites. We attempt to go beyond these limitations by implementing a workflow for a high throughput screening, designed to systematize the problem and exhaustively search for feasible active sites. We use Pd-exchanged CHA and BEA to illustrate the approach. After conducting thousands of individual calculations, we identify the sites most favorable for the Pd cation and discuss the results in detail. The high throughput screening identifies many energetically favorable sites that are non-trivial. Lastly, we employ these results to examine NO adsorption in Pd-exchanged CHA, which is a promising passive NOx adsorbent (PNA) during the cold start of automobiles. The results shed light on critical active sites for NOx capture that were not previously studied.

The Theoretical Research of Constitutive Property, Reactivity and FTIR of Chitosan

2010 ◽  
Vol 658 ◽  
pp. 177-180
Author(s):  
Juan Qin Xue ◽  
Dan Dan Wen ◽  
Li Hua Yu ◽  
Yu Jie Wang ◽  
Jun Zhu
Keyword(s):  
Molecular Orbital ◽  
Active Sites ◽  
Density Functional ◽  
Basis Set ◽  
Theoretical Research ◽  
Rotational Isomers ◽  
B3lyp Method ◽  
Stability Order ◽  
The Stability ◽  
Experimental Values

The structural optimization and the frequency for chitosan monomer, chitobiose and chitotriose with the quantum chemistry abinitio HF and the density functional B3LYP method by choosing 6-311 + G (d, p) as the basis set were calculated and studied. For its three rotational isomers, gauche-trans (gt), gauche - gauche (gg), and trans-gauche (tg), the calculations comparatively were performed respectively. The charge distribution and frontier molecular orbit were analyzed by using the method of natural bond orbital (NBO). The calculated IR spectrum was compared with the experimental data. The results showed that the three rotational isomers gt, gg, and tg can stably existed in chitosan with the stability order gg﹥gt﹥tg. Its highest occupied molecular orbital (HOMO) was provided primarily by nitrogen atom and its lowest unoccupied molecular orbital (LUMO) was provided mainly by the oxygen atom; Its reaction active sites were concentrated in -NH2 and –OH. The calculated infrared spectra were in good agreement with the experimental values.

Theoretical Studies on the Chemical Structure of Carboxymethyl Chitosan

2010 ◽  
Vol 160-162 ◽  
pp. 1822-1827
Author(s):  
Xi Lu ◽  
Juan Qin Xue ◽  
Yu Jie Wang ◽  
Wei Bo Mao ◽  
Ming Wu ◽  
...  
Keyword(s):  
Active Sites ◽  
Density Functional ◽  
Carboxymethyl Chitosan ◽  
Water Soluble ◽  
Functional Theory ◽  
Molecular Orbit ◽  
The Density Functional Theory ◽  
Stability Order ◽  
The Stability ◽  
The One

The density functional theory (DFT) calculations explored the structural optimization and the frequency of N-carboxymethyl chitosan (N-CMCS) and O-carboxymethyl chitosan (O-CMCS). For the isomers, the calculations comparatively were performed. The charge distribution and frontier molecular orbit were analyzed by using the natural bond orbital (NBO) method. The results showed: the two rotational isomers a and b can stably exist, with the stability order a>b; N-carboxymethyl chitosan reaction active sites are concentrated in -OH and -NHCH2COOH, while O-carboxymethyl chitosan reaction active sites are concentrated in -NH2 and -CH2COOH; The water-soluble mechanism of carboxymethyl chitosan was investigated deeply, on the one hand, the presence of carboxymethyl of carboxymethyl chitosan had a tendency to ionize H+, on the other hand the carboxymethyl increased the distance and weakened the hydrogen bonds between molecules, even though Einstein shift H-bond is formed in the carboxymethyl chitosan molecules.

scholarly journals The Inhibitory Effect of Some Natural Bioactive D-Glucopyranoside Derivatives against SARS-CoV-2 Main Protease (Mpro) and Spike Protease (Spro)

2021 ◽  
Vol 16 ◽  
pp. 1-18
Author(s):  
Ajoy Kumer ◽  
Unesco Chakma ◽  
Sarkar Mohammad Abe Kawsar
Keyword(s):  
Active Sites ◽  
Density Functional ◽  
Inhibitory Effect ◽  
Binding Affinities ◽  
Ligand Interaction ◽  
Functional Theory ◽  
Main Protease ◽  
Mean Square Fluctuation ◽  
Chemical Descriptors ◽  
The Stability

Outbreak of coronavirus seems to have exacerbated across the globe, but drugs have not been discovered till now. Due to having the antiviral activity of D-glucopyranoside derivatives, this study was designed to examine as the inhibitor by in sillico study against the main protease (Mpro) and Spike protease (Spro) of SARS-CoV-2. First, these derivatives were optimised by Density Functional Theory (DFT). The observation of this study was monitored by molecular docking tools calculating the binding affinities. Afterwards, the ligand interaction with protein was accounted for selecting the how to bind of active sites of the protein. Next, the root means square deviation (RMSD) and root mean square fluctuation (RMSF) were illustrated for determining the stability of the docked complex. Finally, AMDET properties were calculated as well as the Lipisinki rule. All of the derivates showed a binding affinity more than -6.0 kcal/mol while derivatives 2, 3, and 9 were the best-bonded scoring inhibitor against Mpro and Spro. In addition, the chemical descriptors were more supportive tools as an inhibitor, and the Lipisinki rule was satisfied for maximum molecules as a drug. Besides, D-glucopyranoside derivatives may be predicted that they are non-carcinogenic and low toxic for both aquatic and non-aquatic species.

Influence of defect pairs in Ga-based ordered defect compounds: a hybrid density functional study

2020 ◽  
Vol 98 (8) ◽  
pp. 770-777
Author(s):  
Sudhir Kumar ◽  
Suman Joshi ◽  
Durgesh Kumar Sharma ◽  
Sushil Auluck
Keyword(s):  
Band Gap ◽  
Energy Band ◽  
Density Functional ◽  
Functional Study ◽  
Energy Band Gap ◽  
Functional Theory ◽  
Lattice Constants ◽  
Donor Acceptor ◽  
The Stability ◽  
Hybrid Density Functional

In the present paper, density functional theory (DFT) based calculations have been performed to predict the stability, electronic, and optical properties of Ga-rich ordered defect compounds (ODCs). The calculated lattice constants, bulk modulus, their pressure derivatives, and optical constants show good agreement with available experimental data. The hybrid exchange correlations functional have been considered to calculate ground state total energy and energy band gap of the material. The calculated formation energy of ODCs comes smaller than pure CuGaSe2 (CGS). Our calculated optical absorption coefficients indicate that the energy band gap of ODCs can be tuned by changing the number of donor–acceptor defect pairs ([Formula: see text]). The band offset has been calculated to understand the reason of band gap alteration while the number of defect pair changes. Our results may be helpful for other experiments to further improve the performance of ODCs.

scholarly journals A theoretical approach on the ability of functionalized gold nanoparticles for detection of Cd2+

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Mohammad Khavani ◽  
Aliyeh Mehranfar ◽  
Mohammad Izadyar
Keyword(s):  
Gold Nanoparticles ◽  
Metal Ions ◽  
Functional Groups ◽  
Electrostatic Interactions ◽  
Density Functional ◽  
Md Simulations ◽  
Orbital Interactions ◽  
Donor Acceptor ◽  
The Stability ◽  
Functionalized Aunps

AbstractCadmium (Cd) as a toxic element that is widely present in water, soil, and air has important effects on human health, therefore proposing an accurate and selective method for detection of this element is of importance. In this article, by employing full atomistic molecular dynamics (MD) simulations and density functional theory dispersion corrected (DFT-D3) calculations, the effects of 6-mercaptonicotinic acid (MNA) and l-cysteine (CYS) on the stability of gold nanoparticles (AuNPs) and their sensitivity against Cd2+ were investigated. The obtained results indicate that pure AuNPs are not stable in water, while functionalized AuNPs with CYS and MNA groups have considerable stability without aggregation. In other words, the functional groups on the surface of AuNPs elevate their resistance against aggregation by an increase in the repulsive interactions between the gold nanoparticles. Moreover, functionalized AuNPs have considerable ability for selective detection of Cd2+ in the presence of different metal ions. Based on the MD simulation results, MNA-CYS-AuNPs (functionalized AuNPs with both functional groups) have the maximum sensitivity against Cd2+ in comparison with MNA-AuNPs and CYS-AuNPs due to the strong electrostatic interactions. DFT-D3 calculations reveal that the most probable interactions between the metal ions and functional groups are electrostatic, and Cd2+ can aggregate functionalized AuNPs due to strong electrostatic interactions with MNA and CYS groups. Moreover, charge transfer and donor–acceptor analyses show that molecular orbital interactions between the functional groups and Cd2+ can be considered as the driving force for AuNPs aggregation. A good agreement between the theoretical results and experimental data confirms the importance of the molecular modeling methods as a fast scientific protocol for designing new functionalized nanoparticles for application in different fields.

Field Effect Modulation of Electrocatalytic Hydrogen Evolution at Back-Gated Two-Dimensional MoS2 Electrodes

2019 ◽  
Author(s):  
Yan Wang ◽  
Sagar Udyavara ◽  
Matthew Neurock ◽  
C. Daniel Frisbie
Keyword(s):  
Electric Field ◽  
Hydrogen Evolution ◽  
Active Sites ◽  
Density Functional ◽  
Electrode Materials ◽  
Density Functional Theory Calculations ◽  
Electronic Charge ◽  
Back Side ◽  
Gate Electrode ◽  
Conventional Manner

<div> <div> <div> <p> </p><div> <div> <div> <p>Electrocatalytic activity for hydrogen evolution at monolayer MoS2 electrodes can be enhanced by the application of an electric field normal to the electrode plane. The electric field is produced by a gate electrode lying underneath the MoS2 and separated from it by a dielectric. Application of a voltage to the back-side gate electrode while sweeping the MoS2 electrochemical potential in a conventional manner in 0.5 M H2SO4 results in up to a 140-mV reduction in overpotential for hydrogen evolution at current densities of 50 mA/cm2. Tafel analysis indicates that the exchange current density is correspondingly improved by a factor of 4 to 0.1 mA/cm2 as gate voltage is increased. Density functional theory calculations support a mechanism in which the higher hydrogen evolution activity is caused by gate-induced electronic charge on Mo metal centers adjacent the S vacancies (the active sites), leading to enhanced Mo-H bond strengths. Overall, our findings indicate that the back-gated working electrode architecture is a convenient and versatile platform for investigating the connection between tunable electronic charge at active sites and overpotential for electrocatalytic processes on ultrathin electrode materials.</p></div></div></div><br><p></p></div></div></div>

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