scholarly journals EXPERIMENTAL CUM THEORETICAL EVALUATION OF MOLECULAR STRUCTURE, VIBRATIONAL SPECTRA, NBO, UV, NMR, OF A BIOACTIVE COMPOUND – PHENOXYACETOHYDRAZIDE

2015 ◽  
Vol 3 (7) ◽  
pp. 103-115
Author(s):  
M. Sangeetha ◽  
R. Mathammal
Keyword(s):  
Molecular Orbital ◽  
Density Functional ◽  
Chemical Shifts ◽  
Atomic Orbital ◽  
Bioactive Compound ◽  
Nbo Analysis ◽  
Basis Set ◽  
Theoretical Evaluation ◽  
Vibrational Assignments ◽  
Key Species

Hydrazide-Hydrazone compounds are key species for a range of bioactivities. The first complete density functional theoretical study of Phenoxyacetohydrazide(PAH) is reported. The normal mode frequencies, intensities and the corresponding vibrational assignments were calculated using the GAUSSIAN 09W set of quantum chemistry codes at the DFT/B3LYP levels of theory using the 6-311++G** basis set. Stability of the molecule arising from hyperconjugative interactions has been probed using NBO analysis. 1H and 13C NMR spectra have been analysed and the chemical shifts were calculated using the gauge independent atomic orbital(GIAO) method. The theoretical UV-Vis spectrum and the electronic properties, such as HOMO(Highest occupied molecular orbital) and LUMO (Lowest unoccupied molecular orbital) were performed by time dependent density functional theory(TD-DFT) approach.

scholarly journals Quantum chemical studies on structural, spectroscopic, nonlinear optical, and thermodynamic properties of the 1,2,4-triazole compound

2021 ◽  
Vol 27 (1) ◽  
pp. 112-132
Author(s):  
Hilal Medetalibeyoğlu ◽  
Haydar Yüksek
Keyword(s):  
Density Functional Theory ◽  
Molecular Orbital ◽  
Density Functional ◽  
Chemical Shifts ◽  
Atomic Orbital ◽  
Fluorescence Emission ◽  
Strong Relationship ◽  
Basis Set ◽  
Functional Theory ◽  
Nmr Chemical Shifts

Abstract In this study, the structure of 4-[4-(diethylamino)-benzylideneamino]-5-benzyl-2H-1,2,4-triazol-3(4H)-one (DBT) was examined through spectroscopic and theoretical analyses. In this respect, the geometrical, vibrational frequency, 1H and 13C-nuclear magnetic resonance (NMR) chemical shifts, thermodynamic, hyperpolarizability, and electronic properties including the highest occupied molecular orbital–lowest unoccupied molecular orbital (HOMO–LUMO) energies of DBT as a potential non-linear optical (NLO) material were investigated using density functional theory at the B3LYP level with the 6-311G basis set. 1H and 13C-NMR chemical shifts of DBT with the gauge-invariant atomic orbital and continuous set of gauge transformation methods (in the solvents) were estimated, and the computed chemical shift values displayed excellent alignment with observed ones. Time-dependent density-functional theory (TD-DFT) calculations with the integral equation formalism polarizable continuum model within various solvents and gas phases in the ground state were used to evaluate UV-vis absorption and fluorescence emission wavelengths. Thermodynamic parameters including enthalpy, heat capacity, and entropy for DBT were also calculated at various temperatures. Moreover, calculations of the NLO were carried out to obtain the title compound’s electric dipole moment and polarizability properties. To illustrate the effect of the theoretical method on the spectroscopic and structural properties of DBT, experimental data of structural and spectroscopic parameters were used. The correlational analysis results were observed to indicate a strong relationship between the experimental and theoretical results.

scholarly journals Structural and spectroscopic characterization and DFT studies of 2-amino-1,10-phenanthrolin-1-ium chloride

2019 ◽  
Vol 10 (2) ◽  
pp. 95-101
Author(s):  
Sebile Işık Büyükekşi ◽  
Namık Özdemir ◽  
Abdurrahman Şengül
Keyword(s):  
Density Functional Theory ◽  
Electronic Absorption ◽  
13C Nmr ◽  
Density Functional ◽  
Electronic Absorption Spectra ◽  
Chemical Shifts ◽  
Atomic Orbital ◽  
Basis Set ◽  
Functional Theory ◽  
1H And 13C Nmr

A versatile synthetic building block, 2-amino-1,10-phenanthrolin-1-ium chloride (L∙HCl) was synthesized and characterized by IR, 1H and 13C NMR DEPT analysis, UV/Vis and single-crystal X-ray diffraction technique. The molecular geometry, vibrational wavenumbers and gauge including atomic orbital (GIAO), 1H and 13C NMR chemical shifts values of the title compound in the ground state were obtained by using density functional theory (DFT/B3LYP) method with 6-311++G(d,p) basis set and compared with the experimental data. Electronic absorption spectrum of the salt was determined using the time-dependent density functional theory (TD-DFT) method at the same level. In the NMR and electronic absorption spectra calculations, the effect of solvent on the theoretical parameters was included using the default model with DMSO as solvent. The obtained theoretical parameters agree well with the experimental findings.

A density functional approach toward structural features and properties of C20…N2X2 (X = H, F, Cl, Br, Me) molecules

2014 ◽  
Vol 13 (04) ◽  
pp. 1450023 ◽  
Author(s):  
Reza Ghiasi ◽  
Morteza Zaman Fashami ◽  
Amir Hossein Hakimioun
Keyword(s):  
Density Functional ◽  
Chemical Shifts ◽  
Geometry Optimization ◽  
Structural Features ◽  
Nbo Analysis ◽  
Basis Set ◽  
Basis Sets ◽  
Basis Set Superposition Error ◽  
Homo And Lumo ◽  
Lowest Unoccupied Molecular Orbitals

In this work, the interaction of C 20 with N 2 X 2 ( X = H , F , Cl , Br , Me ) molecules has been explored using the B3LYP, M062x methods and 6-311G(d,p) and 6-311+G(d,p) basis sets. The interaction energies (IEs) obtained with standard method were corrected by basis set superposition error (BSSE) during the geometry optimization for all molecules at the same levels of theory. It was found C 20… N 2 H 2 interaction is stronger than the interaction of other N 2 X 2 ( X = F , Cl , Br , Me ) with C 20. Highest occupied and lowest unoccupied molecular orbitals (HOMO and LUMO, respectively) levels are illustrated by density of states spectra (DOS). The nucleus-independent chemical shifts (NICSs) confirm that C 20… N 2 X 2 molecules exhibit aromatic characteristics. Geometries obtained from DFT calculations were used to perform NBO analysis. Also, 14 N NQR parameters of the C 20… N 2 X 2 molecules are predicted.

scholarly journals Structural characterization of kaempferol: a spectroscopic and computational study

2019 ◽  
Vol 38 (1) ◽  
pp. 49 ◽  
Author(s):  
Dejan Milenković ◽  
Jasmina M Dimitrić Marković ◽  
Dušan Dimić ◽  
Svetlana Jeremić ◽  
Dragan Amić ◽  
...  
Keyword(s):  
Density Functional ◽  
Computational Study ◽  
Chemical Shifts ◽  
Absolute Error ◽  
Nbo Analysis ◽  
Basis Set ◽  
Functional Theory ◽  
The Density Functional Theory ◽  
Spectroscopic Characteristics

Calculations based on the density functional theory, with the B3LYP functional and the 6-311++G(d,p) basis set, were performed with the aim of confirming the molecular structure and spectroscopic characteristics of kaempferol, a naturally occurring flavonoid molecule. The electronic structure of kaempferol was examined using NBO analysis. The assigning of the experimentally obtained IR and Raman spectra was performed after the best-fit-based comparison with theoretical spectra. The 13C and 1H NMR experimental spectra were related to the theoretically obtained values of the chemical shifts determined by the GIAO method. The correlation coefficient and the average absolute error values proved B3LYP-D3 to be an adequate method in describing the NMR parameters of kaempferol. Molecular docking analysis was carried out in order to identify the potency of inhibition of the title molecule against human procalcitonin. The inhibition activity was obtained for 10 conformations of ligand inside the protein.

Systematic Gauge-Including Atomic Orbital-Hybrid Density Functional Theory Linear Regressions for 13C NMR Chemical Shifts Calculation

2020 ◽  
Vol 12 (3) ◽  
pp. 364-370
Author(s):  
Sara Sâmitha Souza ◽  
Mariana Aparecida de Souza Martins ◽  
Antonio Maia de Jesus Chaves Neto ◽  
Gunar Vingre Da Silva Mota ◽  
Fabio Luiz Paranhos Costa
Keyword(s):  
Density Functional Theory ◽  
Nuclear Magnetic Resonance ◽  
Magnetic Resonance ◽  
Density Functional ◽  
Chemical Shifts ◽  
Atomic Orbital ◽  
Basis Set ◽  
Functional Theory ◽  
Linear Regressions ◽  
Nuclear Magnetic

Density-functional theory calculations of the magnetic shielding for nuclear magnetic resonance provide an important contribution to understand the experimental values obtained in laboratory for chemical shifts present in the samples. From of a comparative of the performance of ten hybrid functional within of the framework of the density-functional theory using 10 different hybrid functionals with 3-21G (B1), 6-31G(d) (B2) and 6-31+ G(d, p) (B3) basis set, with intuit of evaluating of performance of the 13 C nuclear magnetic resonance from a representative of the terpene class and a heterocyclic compound, (–)-loliolide ((7aR)-6-hydroxy-4,4,7a-trimethyl-6,7-dihydro-5H1-benzofuran-2-one). This molecule, satisfactorily, represents the main structure of this class, with conformational freedom, optical activity and a benzofuran nucleus. The ωB97X-D, MPW1K and HSEH1PBE functionals presented the best calculation performance. It is interesting to note that after the use of linear regressions all root mean square error values for ωB97X-D were lower than 3 ppm. These are 2.91 ppm (B1), 2.46 (B2) ppm and 2.62 ppm (B3). The information contained in this work can be used for the assignment of experimental nuclear magnetic resonance spectra and will motivate further studies involving the theoretical calculation of the chemical shift of 13C.

scholarly journals Density Functional Theory Study on Conformers of Benzoylcholine Chloride

2013 ◽  
Vol 2013 ◽  
pp. 1-10 ◽  
Author(s):  
Mustafa Karakaya ◽  
Fatih Ucun ◽  
Ahmet Tokatlı
Keyword(s):  
Density Functional Theory ◽  
Ground State ◽  
Density Functional ◽  
Atomic Orbital ◽  
Nbo Analysis ◽  
Vibrational Frequencies ◽  
Molecular Structures ◽  
Basis Set ◽  
Functional Theory ◽  
B3lyp Method

The optimized molecular structures and vibrational frequencies and also gauge including atomic orbital (GIAO)1H and13C NMR shift values of benzoylcholine chloride [(2-benzoyloxyethyl) trimethyl ammonium chloride] have been calculated using density functional theory (B3LYP) method with 6-31++G(d) basis set. The comparison of the experimental and calculated infrared (IR), Raman, and nuclear magnetic resonance (NMR) spectra has indicated that the experimental spectra are formed from the superposition of the spectra of two lowest energy conformers of the compound. So, it was concluded that the compound simultaneously exists in two optimized conformers in the ground state. Also the natural bond orbital (NBO) analysis has supported the simultaneous exiting of two conformers in the ground state. The calculated optimized geometric parameters (bond lengths and bond angles) and vibrational frequencies for both the lowest energy conformers were seen to be in a well agreement with the corresponding experimental data.

scholarly journals Spectroscopic Studies and Vibrational Assignments, Homo- Lumo, UV-VIS, NBO Analysis of Benzonitrile

2020 ◽  
Vol 13 (3) ◽  
pp. 225-239
Author(s):  
K. Rajalakshmi ◽  
S. Sharmila
Keyword(s):  
Molecular Orbital ◽  
Density Functional ◽  
Density Functional Theory Calculations ◽  
Spectroscopic Studies ◽  
Nbo Analysis ◽  
Functional Theory ◽  
Vibrational Assignments ◽  
Highest Occupied Molecular Orbital ◽  
Lowest Unoccupied Molecular Orbital ◽  
The Fourier Transform

The Fourier transform infrared and FT-Raman spectra of Benzonitrile have been recorded in region of 4000-400 and 4000-100 cm -1 respectively. A complete assignments and analysis of fundamental vibrational modes of the molecule have been carried out. The observed fundamental modes have been compared with harmonic vibrational frequencies computed using ab initio and density functional theory calculations by employing B3LYP functional at 6-311G(d, p) level and HF/6-311G(d, p).UV-Vis spectrum of the compound has been recorded, the natural bond orbital (NBO) electronic properties, such as highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) energies have been calculated with B3LYP/6-311G(d, p) level. These calculated energies show that charge transfer occurs within molecule. NBO analysis, thermodynamics properties and Mulliken charges of the title molecule are also calculated and interpreted

scholarly journals Molecular Structure, NMR, HOMO, LUMO, and Vibrational Analysis of O-Anisic Acid and Anisic Acid Based on DFT Calculations

2013 ◽  
Vol 2013 ◽  
pp. 1-18 ◽  
Author(s):  
R. Mathammal ◽  
N. Jayamani ◽  
N. Geetha
Keyword(s):  
Density Functional ◽  
Chemical Shifts ◽  
Atomic Orbital ◽  
Vibrational Analysis ◽  
Vibrational Frequencies ◽  
Computational Method ◽  
Basis Set ◽  
H Nmr ◽  
Anisic Acid ◽  
Vibrational Bands

This work deals with the vibrational spectroscopy of O-Anisic acid (OAA) and Anisic acid (AA). The fundamental vibrational frequencies and intensity of vibrational bands were evaluated using density functional theory (DFT) with standard B3LYP/6-31G** method and basis set combinations. The vibrational spectra were interpreted, with the aid of normal coordinate analysis based on a scaled quantum mechanical force field. The infrared and Raman spectra were also predicted from the calculated intensities. The effects of carbonyl and methyl substitutions on the structure and vibrational frequencies have been investigated. Comparison of simulated spectra with the experimental spectra provides important information about the ability of the computational method to describe the vibrational modes. The13C and1H NMR chemical shifts of the DFA and CA molecules were calculated using the gauge-invariant-atomic orbital (GIAO) method in DMSO solution using IEF-PCM model and compared with experimental data.

scholarly journals Synthesis, characterization, DFT, and TD-DFT studies of (E)-5-((4,6-dichloro-1,3,5-triazin-2-yl)amino)-4-hydroxy-3-(phenyldiazenyl)naphthalene-2,7-diylbis(hydrogen sulfite)

2021 ◽  
Vol 3 (7) ◽  
Author(s):  
Hitler Louis ◽  
Obieze C. Enudi ◽  
Joseph O. Odey ◽  
Izubundu B. Onyebuenyi ◽  
Azuaga T. Igbalagh ◽  
...  
Keyword(s):  
Molecular Orbital ◽  
Density Functional ◽  
Energy Gap ◽  
Nbo Analysis ◽  
Basis Set ◽  
Orbital Interactions ◽  
B3lyp Method ◽  
Td Dft ◽  
Donor Acceptor ◽  
Molecular Orbital Analysis

AbstractIn this study, (E)-5-((4,6-dichloro-1,3,5-triazin-2-yl)amino)-4-hydroxy-3-(phenyldiazenyl)naphthalene-2,7-diylbis(hydrogen sulfite), a cyanurated H-acid (CHA) azo dye, was synthesized and characterized using FT-IR spectrophotometer and GC-MS spectroscopy. A density functional theory (DFT) based B3LYP and CAM-B3LYP method with 6–311 + G (d,p) basis set analysis was computed for HOMO-LUMO, natural bonding orbitals (NBO), UV-Vis absorptions and excitation interactions, in order to understand its molecular orbital excitation properties. A low Energy gap (Eg) of 2.947 eV was obtained from the molecular orbital analysis, which showed that HOMO to LUMO transition is highly feasible; hence CHA is adequate for diverse electronic and optic applications. Studies of the first five excitations (S0 → S1/S2/S3/S4/S5) of CHA revealed that S0 → S1 and S0 → S3 are π → π* type local excitations distributed around the –N=N– group; S0 → S2, a Rydberg type local excitation; S0 → S4, a highly localized π → π* excitation; while S0 → S5 is an n → π* charge transfer from a benzene ring to –N=N– group. From NBO analysis, we obtained the various donor–acceptor orbital interactions contributing to the stabilization of the studied compound. Most significantly, some strong hyper-conjugations (n → n*) within fragments, and non-bondingand anti-bonding intermolecular (n → n*/π* and π → n*/π*) interactions were observed to contribute appreciable energies. This study is valuable for understanding the molecular properties of the azo dyes compounds and for synthesizing new ones in the future.

Experimental and theoretical investigation of molecular structure, vibrational analysis, chemical reactivity, electrostatic potential of benzyl methacrylate monomer and homopolymer

2016 ◽  
Vol 94 (9) ◽  
pp. 853-864 ◽  
Author(s):  
Feride Akman
Keyword(s):  
Electrostatic Potential ◽  
Density Functional ◽  
Chemical Shifts ◽  
Chemical Reactivity ◽  
Atomic Orbital ◽  
Vibrational Analysis ◽  
Calculated Data ◽  
Basis Set ◽  
Geometrical Parameters ◽  
Molecular Approaches

Until now, a number of new polymers have been discovered with the aid of experimental and computational molecular approaches and indicated to have potential applications. All the computational molecular approaches provide information helpful to further study. So, monomer and homopolymer of benzyl methacrylate (BzMA), which is a popular methacrylate ester monomer, were synthesized and investigated based on density functional theory (DFT) and Hartree–Fock (HF) methods. The monomer and homopolymer were characterized by FTIR, 1H, and 13C NMR techniques. The molecular geometry, geometrical parameters, Mulliken atomic charges, and vibrational frequencies of BzMA monomer and homopolymer (in dimer form) were calculated by using the DFT and HF methods with 6-31G (d, p) as basis set. The molecular electrostatic potential maps and molecular orbitals properties of monomer and homopolymer were calculated using the 6-31G (d, p) basis set of theories. Besides, 1H and 13C chemical shifts were calculated by the gauge–including atomic orbital approach. The results demonstrated that the theoretical values were in good agreement with the experimental values. The calculated data are important to providing insight into molecular analysis and may be used in technological applications.

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