scholarly journals Length-based assessment of southern brown shrimp stock from trawl fisheries on the Amazon Continental Shelf

2021 ◽  
Vol 10 (8) ◽  
pp. e44410817394
Author(s):  
Ualerson Iran Peixoto ◽  
Bianca Bentes ◽  
Humber Agrelli Andrade ◽  
Victoria Judith Isaac
Keyword(s):  
Continental Shelf ◽  
Population Analysis ◽  
Maximum Sustainable Yield ◽  
The Body ◽  
Brown Shrimp ◽  
Economic Losses ◽  
Virtual Population ◽  
Current Maximum ◽  
Length Data ◽  
Trawl Fisheries

Virtual Population Analysis (VPA) is a diagnostic tool that providing valuable input for management decisions to sustainable catches for marine fisheries. Industrial shrimp trawling produces one of the most valuable export commodities in the Brazilian fishery sector. Due to the profitability, there is pressure on government agencies to increase the number of fishing licenses. The present study used the body-length data available for the industrial southern brown shrimp trawling fleet of the Amazon Continental Shelf (ACS), Brazil, to estimate the current maximum sustainable yield and test the potential effects of increased effort on the sustainability of this fishery. The available data encompasses 13 years of onboard monitoring of shrimp trawling. The VPA was run in an Excel spreadsheet. The results indicate that the ACS shrimp stock has high fishing (F) mortality rates, although exploitation levels can be considered adequate below the MSY. An increase of up to 40% in fishery effort – including the expansion of the number of vessels – would not result in overfishing, although we would not recommend an increase in effort, as this may increase impacts on the bycatch fauna and eventual economic losses in the event of the failure of recruitment.

scholarly journals Evaluating the effect of predation mortality on forage species population dynamics in the Northeast US continental shelf ecosystem using multispecies virtual population analysis

2008 ◽  
Vol 65 (9) ◽  
pp. 1689-1700 ◽  
Author(s):  
Megan C. Tyrrell ◽  
Jason S. Link ◽  
Hassan Moustahfid ◽  
William J. Overholtz
Keyword(s):  
Population Dynamics ◽  
Continental Shelf ◽  
Population Analysis ◽  
Northwest Atlantic ◽  
Virtual Population Analysis ◽  
Virtual Population ◽  
Predation Mortality ◽  
Forage Species ◽  
Species Population ◽  
Northeast Us

AbstractTyrrell, M. C., Link, J. S., Moustahfid, H., and Overholtz, W. J. 2008. Evaluating the effect of predation mortality on forage species population dynamics in the Northeast US continental shelf ecosystem using multispecies virtual population analysis. – ICES Journal of Marine Science, 65: 1689–1700. An expanded version of multispecies virtual population analysis (MSVPA) is used to analyse the effects of predation by 14 key predators on Atlantic herring and Atlantic mackerel in the Northwest Atlantic ecosystem for the period 1982–2002. For herring, MSVPA produced greater abundance estimates than single-species assessments, especially for the youngest age classes. The average rate of predation mortality for herring aged 0 and 1 was also higher than the standard total natural mortality rate (0.2) for the 21-year time frame (0.84–3.2). The same was true for mackerel in this MSVPA (0.37–1.6). Consumptive removals of herring and mackerel generally increased over time. From 1999 to 2001, the biomass removed by predators exceeded each species' commercial landings. The sum of consumption and landings notably exceeded the multispecies maximum sustainable yield for herring for the years 1995–2002 and for mackerel for the period 1999–2002. We highlight the importance of accounting for predation on forage species in the context of changes to the fish community that have taken place in the Northwest Atlantic over the past few decades.

scholarly journals Statistical catch-at-age analysis vs. ADAPT-VPA: the case of Gulf of Maine cod

2008 ◽  
Vol 65 (9) ◽  
pp. 1717-1732 ◽  
Author(s):  
Doug S. Butterworth ◽  
Rebecca A. Rademeyer
Keyword(s):  
Survey Data ◽  
Gadus Morhua ◽  
Gulf Of Maine ◽  
Population Analysis ◽  
Assessment Method ◽  
Maximum Sustainable Yield ◽  
Virtual Population ◽  
Spawning Stock ◽  
Stock Recruitment ◽  
Using Data

Abstract Butterworth, D. S., and Rademeyer, R. A. 2008. Statistical catch-at-age analysis vs. ADAPT-VPA: the case of Gulf of Maine cod. – ICES Journal of Marine Science, 65: 1717–1732. In 2003, given an estimate of a spawning-stock biomass (Bsp) of 27% of the maximum sustainable yield (MSY) level based on an adaptive framework-virtual population analysis (ADAPT-VPA) assessment using data only after 1981, the Gulf of Maine cod (Gadus morhua) stock was deemed “overfished” under the US Magnuson–Stevens Act. However, an alternative statistical catch-at-age assessment (SCAA) at the time, using survey data from 1964, indicated Bsp above . This is investigated, together with other (sometimes conflicting) suggestions made during a number of recent assessment reviews of this stock. The primary reason for the different result is that the ADAPT-VPA assessment imposed asymptotically flat selectivity-at-age when there was strong statistical evidence for dome-shaped selectivity. Once adjusted for this, either assessment method robustly estimates Bsp relatively close to rather than below the “overfished” threshold of 0.5 . SCAA allows the longer series of survey data available to be incorporated, providing a better basis to estimate MSY-related targets and doubling the related precision in some cases. As such targets are important when implementing the Magnuson–Stevens Act, SCAA seems preferable to ADAPT-VPA for assessing this stock. Some broader inferences to be drawn from this comparative process include the need for: (i) careful treatment of the plus-group, especially if selectivity may be dome-shaped; (ii) flexible parameterizations of selectivity-at-age in SCAA to avoid false perceptions of the precision of results; and (iii) care in the use of the Beverton–Holt stock–recruitment function, as it gives inappropriately low estimates of if there is an overall negative trend in the estimates of recruitment plotted against Bsp.

scholarly journals Pathophysiology of Fever and Application of Infrared Thermography (IRT) in the Detection of Sick Domestic Animals: Recent Advances

Animals ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 2316
Author(s):  
Daniel Mota-Rojas ◽  
Dehua Wang ◽  
Cristiane Gonçalves Titto ◽  
Jocelyn Gómez-Prado ◽  
Verónica Carvajal-de la Fuente ◽  
...  
Keyword(s):  
Body Temperature ◽  
Infrared Thermography ◽  
Core Body Temperature ◽  
The Body ◽  
Farm Animals ◽  
Economic Losses ◽  
Febrile Response ◽  
Temperature Range ◽  
Stable Temperature ◽  
Core Body

Body-temperature elevations are multifactorial in origin and classified as hyperthermia as a rise in temperature due to alterations in the thermoregulation mechanism; the body loses the ability to control or regulate body temperature. In contrast, fever is a controlled state, since the body adjusts its stable temperature range to increase body temperature without losing the thermoregulation capacity. Fever refers to an acute phase response that confers a survival benefit on the body, raising core body temperature during infection or systemic inflammation processes to reduce the survival and proliferation of infectious pathogens by altering temperature, restriction of essential nutrients, and the activation of an immune reaction. However, once the infection resolves, the febrile response must be tightly regulated to avoid excessive tissue damage. During fever, neurological, endocrine, immunological, and metabolic changes occur that cause an increase in the stable temperature range, which allows the core body temperature to be considerably increased to stop the invasion of the offending agent and restrict the damage to the organism. There are different metabolic mechanisms of thermoregulation in the febrile response at the central and peripheral levels and cellular events. In response to cold or heat, the brain triggers thermoregulatory responses to coping with changes in body temperature, including autonomic effectors, such as thermogenesis, vasodilation, sweating, and behavioral mechanisms, that trigger flexible, goal-oriented actions, such as seeking heat or cold, nest building, and postural extension. Infrared thermography (IRT) has proven to be a reliable method for the early detection of pathologies affecting animal health and welfare that represent economic losses for farmers. However, the standardization of protocols for IRT use is still needed. Together with the complete understanding of the physiological and behavioral responses involved in the febrile process, it is possible to have timely solutions to serious problem situations. For this reason, the present review aims to analyze the new findings in pathophysiological mechanisms of the febrile process, the heat-loss mechanisms in an animal with fever, thermoregulation, the adverse effects of fever, and recent scientific findings related to different pathologies in farm animals through the use of IRT.

Virtual Population Analysis (VPA) Equations for Nonhomogeneous Populations, and a Family of Approximations Including Improvements on Pope's Cohort Analysis

1986 ◽  
Vol 43 (12) ◽  
pp. 2406-2409 ◽  
Author(s):  
Alec D. MacCall
Keyword(s):  
Mortality Rate ◽  
Population Analysis ◽  
Seasonal Pattern ◽  
Cohort Analysis ◽  
Natural Mortality ◽  
Close Approximation ◽  
Virtual Population Analysis ◽  
Virtual Population ◽  
Special Case

A set of "backward" virtual population analysis (VPA) equations relates catch (Ct) from continuous fishing between times t and t + 1 to population n size (Nt, Nt+1) when a portion of the stock is unavailable to fishing. The usual VPA equations become a special case where the entire stock is available (i.e. the stock is homogeneous). A close approximation to the VPA equations is Nt = Nt+1 exp(M) + CtM/(1 − exp(−M)), which has properties similar to Pope's "cohort analysis" and is somewhat more accurate in the case of a continuous fishery, especially if the natural mortality rate (M) is large. Much closer simple approximations are possible if the seasonal pattern of catches is known.

scholarly journals Gene Variations in Cis-Acting Elements between the Taiwan and Prototype Strains of Porcine Epidemic Diarrhea Virus Alter Viral Gene Expression

Genes ◽  
2018 ◽  
Vol 9 (12) ◽  
pp. 591
Author(s):  
Tsung-Lin Tsai ◽  
Chen-Chang Su ◽  
Ching-Chi Hsieh ◽  
Chao-Nan Lin ◽  
Hui-Wen Chang ◽  
...  
Keyword(s):  
Gene Expression ◽  
Porcine Epidemic Diarrhea Virus ◽  
The Body ◽  
Economic Losses ◽  
Viral Gene ◽  
Sequence Motif ◽  
Cis Acting ◽  
Diarrhea Virus ◽  
Porcine Epidemic Diarrhea ◽  
In Cis

In 2013, the outbreak of porcine epidemic diarrhea (PED) in Taiwan caused serious economic losses. In this study, we examined whether the variations of the cis-acting elements between the porcine epidemic diarrhea virus (PEDV) Taiwan (TW) strain and the prototype strain CV777 alter gene expression. For this aim, we analyzed the variations of the cis-acting elements in the 5’ and 3’ untranslated regions (UTRs) between the PEDV TW, CV777, and other reference strains. We also determined the previously unidentified transcription regulatory sequence (TRS), a sequence motif required for coronavirus transcription, and found that a nucleotide deletion in the TW strain, in comparison with CV777 strain, immediately downstream of the leader core sequence alters the identity between the leader TRS and the body TRS. Functional analyses using coronavirus defective interfering (DI) RNA revealed that such variations in cis-acting elements for the TW strain compared with the CV777 strain have an influence on the efficiency of gene expression. The current data show for the first time the evolution of PEDV in terms of cis-acting elements and their effects on gene expression, and thus may contribute to our understanding of recent PED outbreaks worldwide.

scholarly journals Scuticociliatosis caused by Uronema sp. in ten different ornamental aquarium reef fish in Brazil

2020 ◽  
Vol 29 (1) ◽  
Author(s):  
Pedro Henrique Magalhães Cardoso ◽  
Luisa Zanolli Moreno ◽  
Andrea Micke Moreno ◽  
Simone de Carvalho Balian ◽  
Carolina Helena de Oliveira ◽  
...  
Keyword(s):  
Reef Fish ◽  
Inflammatory Process ◽  
Ornamental Fish ◽  
The Body ◽  
Economic Losses ◽  
Histopathological Analysis ◽  
Vacuolar Degeneration ◽  
Diseased Fish ◽  
Ulcerative Lesions ◽  
Severity Of The Disease

Abstract Scuticociliatosis, caused by an opportunistic ciliate protozoan, is responsible for significant economic losses in marine ornamental fish. This study reports the occurrence of Uronema spp., parasitizing ten species of marine reef fish at an ornamental fish wholesaler: Blue green damselfish (Chromis viridis), Vanderbilt’s Chromis (Chromis vanderbilti), Pennant coralfish (Heniochus acuminatus), Threespot angelfish (Apolemichthys trimaculatus), Goldspotted angelfish (Apolemichthys xanthopunctatus), Sea goldie (Pseudanthias squamipinnis), Orchid dottyback (Pseudochromis fridmani), Threadfin butterflyfish (Chaetodon auriga), Vagabond butterflyfish (Chaetodon vagabundus), and Bluecheek butterflyfish (Chaetodon semilarvatus). Diseased fish showed disorders such as hemorrhages and ulcerative lesions on the body surface. Histopathological analysis of the muscle, liver, gut, kidney, spleen, gills, and stomach revealed hemorrhages and degeneration of muscle fiber, vacuolar degeneration of hepatocyte, inflammatory process and granuloma in the liver, atrophy of intestinal villi, inflammatory process and granuloma in the kidney, melanomacrophage centers, as well as inflammatory process in the spleen, epithelial cells hyperplasia and granuloma formation in the gills, and vacuolar degeneration and eosinophils in the stomach. Due to the severity of the disease, it is necessary to implement biosecurity measures with rapid and accurate diagnosis to minimize the risk of economic losses caused by Uronema spp.

Population dynamics and stock assessment of Hilsa shad, Tenualosa ilisha (Hamilton, 1822) along the coast of Bangladesh

2021 ◽  
Vol 48 (2) ◽  
pp. 231-241
Author(s):  
Md Khairul Islam ◽  
Md Humayun ◽  
Manmatha Nath Sarker ◽  
Md Sharifuddin ◽  
M Niamul Naser
Keyword(s):  
Growth Parameters ◽  
Stock Assessment ◽  
Population Analysis ◽  
Total Mortality ◽  
Maximum Sustainable Yield ◽  
Fishing Mortality ◽  
Recruitment Pattern ◽  
Weight Relationship ◽  
Tenualosa Ilisha ◽  
Highly Correlated

Stock Assessment of Tenualosa ilisha (Hamilton, 1822) were estimated using FiSAT-II software with length-frequency data collected from different landing centers. The Southeast Coast of Bay Of Bengal, Cox's Bazar. The Von Bertalanffy growth parameters Land K for the species were asymptotic length (L∞) was 51.41 cm, growth rate (K) was 0.75 year-1 and t0 = -0.2 year respectively. The estimated value of total mortality (Z) based on length converted catch curve using these growth parameters was 2.35 year-1.Natural mortality (M) based on growth parameters and mean environmental temperature (T = 27° C) was 1.00 year-1 and fishing mortality (F) was 1.35 year-1. Optimum length of hilsa at first capture (Lc=L50) was 28.36 cm TL. Growth performance indices (ϕ') was 3.30. The estimated value of the exploitation rate (E) using the length-converted catch curve was 0.57. The recruitment pattern of this species was continuous and two peaks per year. The present investigation clearly showed the over fishing (E > 0.50) condition for T. ilisha in Bangladesh. The estimated length-weight relationship for the combined sex was found to be W = 0.0109 L3. Virtual population analysis (VPA) showed that the maximum fishing mortality occurring in the length between 30 to 35 cm with a maximum value in the length of 32 cm that repeatedly indicate high fishing mortality in the T. ilisha. The generalized length-weight relationship was fitted with the pooled data of all monthly samples were BW = 0.029 TL2.718 (R2= 0.833) respectively. The results revealed that all length-weight relationships were highly correlated (r > 0.993). Maximum sustainable yield (MSY) was estimated as 435,554 t. Bangladesh J. Zool. 48(2): 231-241, 2020

scholarly journals Size and sex composition of two species of the genus Atlantoraja (Elasmobranchii, Rajidae) caught by the bottom trawl fisheries operating on the Uruguayan continental shelf (southwestern Atlantic Ocean)

2011 ◽  
Vol 59 (4) ◽  
pp. 357-364 ◽  
Author(s):  
Luis Orlando ◽  
Ines Pereyra ◽  
Laura Paesch ◽  
Walter Norbis
Keyword(s):  
Continental Shelf ◽  
Significant Variation ◽  
Length Distribution ◽  
Seasonal Distribution ◽  
Size At Maturity ◽  
Southwestern Atlantic ◽  
Spatial And Seasonal Variation ◽  
Southwestern Atlantic Ocean ◽  
Trawl Fisheries ◽  
Size And Sex Composition

In this work we analyzed the spatial and seasonal variation of length distribution, sexual proportion and mature dominance for Atlantoraja cyclophora and A. castelnaui, at the Uruguayan continental shelf. There were significant differences in total length (TL) composition between sexes, being females bigger than males for both species. Atlantoraja cyclophora showed a relatively uniform length distribution between inner and outer shelf. There were no major variations in the sex compositions and in the mature dominance between seasons, suggesting no temporal variation. Atlantoraja castelnaui showed a significant variation in its spatial and seasonal distribution. Individuals were smaller in inner shelf, pointing out the existence of juvenile zone in areas up to 50 m depth. A tendency to capture smaller individuals towards the end of the year was observed. In all seasons over 50% of females were caught below the estimated size at maturity, suggesting that this species is highly susceptible to exploitation.

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