scholarly journals Tracking the Evolutionary Trends Among Small-Size Fishes of the Genus Pyrrhulina (Characiforme, Lebiasinidae): New Insights From a Molecular Cytogenetic Perspective

2021 ◽  
Vol 12 ◽  
Author(s):  
Renata Luiza Rosa de Moraes ◽  
Francisco de Menezes Cavalcante Sassi ◽  
Luiz Antonio Carlos Bertollo ◽  
Manoela Maria Ferreira Marinho ◽  
Patrik Ferreira Viana ◽  
...  
Keyword(s):  
Repetitive Dna ◽  
Sex Chromosome ◽  
Comparative Genomic ◽  
Comparative Genome Hybridization ◽  
Molecular Cytogenetic ◽  
Rdna Sites ◽  
Previous Hypothesis ◽  
History Of ◽  
Cytogenetic Analyses ◽  
High Dynamics

Miniature fishes have always been a challenge for cytogenetic studies due to the difficulty in obtaining chromosomal preparations, making them virtually unexplored. An example of this scenario relies on members of the family Lebiasinidae which include miniature to medium-sized, poorly known species, until very recently. The present study is part of undergoing major cytogenetic advances seeking to elucidate the evolutionary history of lebiasinids. Aiming to examine the karyotype diversification more deeply in Pyrrhulina, here we combined classical and molecular cytogenetic analyses, including Giemsa staining, C-banding, repetitive DNA mapping, comparative genomic hybridization (CGH), and whole chromosome painting (WCP) to perform the first analyses in five Pyrrhulina species (Pyrrhulina aff. marilynae, Pyrrhulina sp., P. obermulleri, P. marilynae and Pyrrhulina cf. laeta). The diploid number (2n) ranged from 40 to 42 chromosomes among all analyzed species, but P. marilynae is strikingly differentiated by having 2n = 32 chromosomes and a karyotype composed of large meta/submetacentric chromosomes, whose plesiomorphic status is discussed. The distribution of microsatellites does not markedly differ among species, but the number and position of the rDNA sites underwent significant changes among them. Interspecific comparative genome hybridization (CGH) found a moderate divergence in the repetitive DNA content among the species’ genomes. Noteworthy, the WCP reinforced our previous hypothesis on the origin of the X1X2Y multiple sex chromosome system in P. semifasciata. In summary, our data suggest that the karyotype differentiation in Pyrrhulina has been driven by major structural rearrangements, accompanied by high dynamics of repetitive DNAs.

scholarly journals Centric Fusions behind the Karyotype Evolution of Neotropical Nannostomus Pencilfishes (Characiforme, Lebiasinidae): First Insights from a Molecular Cytogenetic Perspective

Genes ◽  
2020 ◽  
Vol 11 (1) ◽  
pp. 91 ◽  
Author(s):  
Alexandr Sember ◽  
Ezequiel Aguiar de Oliveira ◽  
Petr Ráb ◽  
Luiz Antonio Carlos Bertollo ◽  
Natália Lourenço de Freitas ◽  
...  
Keyword(s):  
Repetitive Dna ◽  
Small Body ◽  
5S Rdna ◽  
Chromosomal Mapping ◽  
Comparative Genomic ◽  
Comparative Genome Hybridization ◽  
Body Coloration ◽  
Rdna Sites ◽  
Karyotype Differentiation ◽  
Conventional Cytogenetics

Lebiasinidae is a Neotropical freshwater family widely distributed throughout South and Central America. Due to their often very small body size, Lebiasinidae species are cytogenetically challenging and hence largely underexplored. However, the available but limited karyotype data already suggested a high interspecific variability in the diploid chromosome number (2n), which is pronounced in the speciose genus Nannostomus, a popular taxon in ornamental fish trade due to its remarkable body coloration. Aiming to more deeply examine the karyotype diversification in Nannostomus, we combined conventional cytogenetics (Giemsa-staining and C-banding) with the chromosomal mapping of tandemly repeated 5S and 18S rDNA clusters and with interspecific comparative genomic hybridization (CGH) to investigate genomes of four representative Nannostomus species: N. beckfordi, N. eques, N. marginatus, and N. unifasciatus. Our data showed a remarkable variability in 2n, ranging from 2n = 22 in N. unifasciatus (karyotype composed exclusively of metacentrics/submetacentrics) to 2n = 44 in N. beckfordi (karyotype composed entirely of acrocentrics). On the other hand, patterns of 18S and 5S rDNA distribution in the analyzed karyotypes remained rather conservative, with only two 18S and two to four 5S rDNA sites. In view of the mostly unchanged number of chromosome arms (FN = 44) in all but one species (N. eques; FN = 36), and with respect to the current phylogenetic hypothesis, we propose Robertsonian translocations to be a significant contributor to the karyotype differentiation in (at least herein studied) Nannostomus species. Interspecific comparative genome hybridization (CGH) using whole genomic DNAs mapped against the chromosome background of N. beckfordi found a moderate divergence in the repetitive DNA content among the species’ genomes. Collectively, our data suggest that the karyotype differentiation in Nannostomus has been largely driven by major structural rearrangements, accompanied by only low to moderate dynamics of repetitive DNA at the sub-chromosomal level. Possible mechanisms and factors behind the elevated tolerance to such a rate of karyotype change in Nannostomus are discussed.

Molecular Cytogenetic Analysis of Karyotype and Y Chromosome Conservation in Species of the Genus Talpa (Insectivora)

2020 ◽  
Vol 160 (5) ◽  
pp. 264-271
Author(s):  
Juana Gutierrez ◽  
Gael Aleix-Mata ◽  
Juan A. Marchal ◽  
María Arroyo ◽  
Riccardo Castiglia ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Y Chromosome ◽  
Repetitive Dna ◽  
Dna Sequences ◽  
Chromosome Painting ◽  
Chromosomal Mapping ◽  
Repeated Dna ◽  
Molecular Cytogenetic ◽  
Y Chromosomes ◽  
Cytogenetic Analyses

The Talpidae family has a highly stable karyotype. Most of the chromosome studies in this mammal group, however, employed classical cytogenetic techniques. Molecular cytogenetic analyses are still scarce and, for example, no repeated DNA sequences have been described to date. In this work, we used sequence analysis, chromosomal mapping of a LINE1 retroelement sequence, as well as chromosome painting with a whole Y chromosome probe of T. occidentalis to compare the karyotypes of 3 species of the genus Talpa (T. occidentalis, T. romana, and T. aquitania). Our results demonstrate that in Talpa genomes LINE1 sequences are widely distributed on all chromosomes but are enriched in pericentromeric C-band-positive regions. In addition, these LINE1 accumulate on the Y chromosomes of the 3 Talpa species regardless of their euchromatic or heterochromatic condition. Chromosome painting shows that the Y chromosomes in these 3 species are highly conserved. Interestingly, they share sequences with heterochromatic blocks on chromosome pairs 14 and 16 and, to a lesser degree, with the pericentromeric regions of other autosomes. Together, our analyses demonstrate that the repetitive DNA content of chromosomes from Talpa species is highly conserved.

scholarly journals Deciphering the Evolutionary History of Arowana Fishes (Teleostei, Osteoglossiformes, Osteoglossidae): Insight from Comparative Cytogenomics

2019 ◽  
Vol 20 (17) ◽  
pp. 4296 ◽  
Author(s):  
Cioffi ◽  
Ráb ◽  
Ezaz ◽  
Bertollo ◽  
Lavoué ◽  
...  
Keyword(s):  
South America ◽  
Indian Plate ◽  
Comparative Genomic ◽  
Nucleotide Polymorphisms ◽  
Dapi Staining ◽  
Single Nucleotide ◽  
Plate Movement ◽  
Array Technology ◽  
History Of ◽  
Cytogenetic Analyses

Arowanas (Osteoglossinae) are charismatic freshwater fishes with six species and two genera (Osteoglossum and Scleropages) distributed in South America, Asia, and Australia. In an attempt to provide a better assessment of the processes shaping their evolution, we employed a set of cytogenetic and genomic approaches, including i) molecular cytogenetic analyses using C- and CMA3/DAPI staining, repetitive DNA mapping, comparative genomic hybridization (CGH), and Zoo-FISH, along with ii) the genotypic analyses of single nucleotide polymorphisms (SNPs) generated by diversity array technology sequencing (DArTseq). We observed diploid chromosome numbers of 2n = 56 and 54 in O. bicirrhosum and O. ferreirai, respectively, and 2n = 50 in S. formosus, while S. jardinii and S. leichardti presented 2n = 48 and 44, respectively. A time-calibrated phylogenetic tree revealed that Osteoglossum and Scleropages divergence occurred approximately 50 million years ago (MYA), at the time of the final separation of Australia and South America (with Antarctica). Asian S. formosus and Australian Scleropages diverged about 35.5 MYA, substantially after the latest terrestrial connection between Australia and Southeast Asia through the Indian plate movement. Our combined data provided a comprehensive perspective of the cytogenomic diversity and evolution of arowana species on a timescale.

scholarly journals Highly Rearranged Karyotypes and Multiple Sex Chromosome Systems in Armored Catfishes from the Genus Harttia (Teleostei, Siluriformes)

Genes ◽  
2020 ◽  
Vol 11 (11) ◽  
pp. 1366
Author(s):  
Geize Aparecida Deon ◽  
Larissa Glugoski ◽  
Marcelo Ricardo Vicari ◽  
Viviane Nogaroto ◽  
Francisco de Menezes Cavalcante Sassi ◽  
...  
Keyword(s):  
Sex Chromosome ◽  
Neotropical Region ◽  
Valid Species ◽  
Comparative Genomic ◽  
Isolated Populations ◽  
Shared Content ◽  
Rdna Sites ◽  
Number Variation ◽  
Fish Group ◽  
Sex Chromosome System

Harttia comprises an armored catfish genus endemic to the Neotropical region, including 27 valid species with low dispersion rates that are restricted to small distribution areas. Cytogenetics data point to a wide chromosomal diversity in this genus due to changes that occurred in isolated populations, with chromosomal fusions and fissions explaining the 2n number variation. In addition, different multiple sex chromosome systems and rDNA loci location are also found in some species. However, several Harttia species and populations remain to be investigated. In this study, Harttia intermontana and two still undescribed species, morphologically identified as Harttia sp. 1 and Harttia sp. 2, were cytogenetically analyzed. Harttia intermontana has 2n = 52 and 2n = 53 chromosomes, while Harttia sp. 1 has 2n = 56 and 2n = 57 chromosomes in females and males, respectively, thus highlighting the occurrence of an XX/XY1Y2 multiple sex chromosome system in both species. Harttia sp. 2 presents 2n = 62 chromosomes for both females and males, with fission events explaining its karyotype diversification. Chromosomal locations of the rDNA sites were also quite different among species, reinforcing that extensive rearrangements had occurred in their karyotype evolution. Comparative genomic hybridization (CGH) experiments among some Harttia species evidenced a shared content of the XY1Y2 sex chromosomes in three of them, thus pointing towards their common origin. Therefore, the comparative analysis among all Harttia species cytogenetically studied thus far allowed us to provide an evolutionary scenario related to the speciation process of this fish group.

scholarly journals Genomic Organization of Repetitive DNA Elements and Extensive Karyotype Diversity of Silurid Catfishes (Teleostei: Siluriformes): A Comparative Cytogenetic Approach

2019 ◽  
Vol 20 (14) ◽  
pp. 3545
Author(s):  
Sukhonthip Ditcharoen ◽  
Luiz Antonio Carlos Bertollo ◽  
Petr Ráb ◽  
Eva Hnátková ◽  
Wagner Franco Molina ◽  
...  
Keyword(s):  
Evolutionary Dynamics ◽  
Chromosomal Rearrangements ◽  
5S Rdna ◽  
Comparative Genomic ◽  
Molecular Cytogenetic ◽  
Rdna Sites ◽  
Genomic Divergence ◽  
Fish Chromosomes ◽  
Dna Elements ◽  
Repetitive Dna Elements

The catfish family Siluridae contains 107 described species distributed in Asia, but with some distributed in Europe. In this study, karyotypes and other chromosomal characteristics of 15 species from eight genera were examined using conventional and molecular cytogenetic protocols. Our results showed the diploid number (2n) to be highly divergent among species, ranging from 2n = 40 to 92, with the modal frequency comprising 56 to 64 chromosomes. Accordingly, the ratio of uni- and bi-armed chromosomes is also highly variable, thus suggesting extensive chromosomal rearrangements. Only one chromosome pair bearing major rDNA sites occurs in most species, except for Wallago micropogon, Ompok siluroides, and Kryptoterus giminus with two; and Silurichthys phaiosoma with five such pairs. In contrast, chromosomes bearing 5S rDNA sites range from one to as high as nine pairs among the species. Comparative genomic hybridization (CGH) experiments evidenced large genomic divergence, even between congeneric species. As a whole, we conclude that karyotype features and chromosomal diversity of the silurid catfishes are unusually extensive, but parallel some other catfish lineages and primary freshwater fish groups, thus making silurids an important model for investigating the evolutionary dynamics of fish chromosomes.

Mixed-Up Sex Chromosomes: Identification of Sex Chromosomes in the X1X1X2X2/X1X2Y System of the Legless Lizards of the Genus Lialis (Squamata: Gekkota: Pygopodidae)

2016 ◽  
Vol 149 (4) ◽  
pp. 282-289 ◽  
Author(s):  
Michail Rovatsos ◽  
Martina Johnson Pokorná ◽  
Marie Altmanová ◽  
Lukáš Kratochvíl
Keyword(s):  
Sex Chromosomes ◽  
Sex Chromosome ◽  
Comparative Genomic ◽  
X Chromosomes ◽  
Telomeric Sequences ◽  
Multiple Sex Chromosomes ◽  
Y Chromosomes ◽  
Heteromorphic Sex Chromosomes ◽  
Cytogenetic Analyses ◽  
Male Heterogamety

Geckos in general show extensive variability in sex determining systems, but only male heterogamety has been demonstrated in the members of their legless family Pygopodidae. In the pioneering study published more than 45 years ago, multiple sex chromosomes of the type X1X1X2X2/X1X2Y were described in Burton's legless lizard (Lialisburtonis) based on conventional cytogenetic techniques. We conducted cytogenetic analyses including comparative genomic hybridization and fluorescence in situ hybridization (FISH) with selected cytogenetic markers in this species and the previously cytogenetically unstudied Papua snake lizard (Lialis jicari) to better understand the nature of these sex chromosomes and their differentiation. Both species possess male heterogamety with an X1X1X2X2/X1X2Y sex chromosome system; however, the Y and one of the X chromosomes are not small chromosomes as previously reported in L. burtonis, but the largest macrochromosomal pair in the karyotype. The Y chromosomes in both species have large heterochromatic blocks with extensive accumulations of GATA and AC microsatellite motifs. FISH with telomeric probe revealed an exclusively terminal position of telomeric sequences in L. jicari (2n = 42 chromosomes in females), but extensive interstitial signals, potentially remnants of chromosomal fusions, in L.burtonis (2n = 34 in females). Our study shows that even largely differentiated and heteromorphic sex chromosomes might be misidentified by conventional cytogenetic analyses and that the application of more sensitive cytogenetic techniques for the identification of sex chromosomes is beneficial even in the classical examples of multiple sex chromosomes.

Analysis of the Origin of Double Mosaic Aneuploidy in Two Cases

2020 ◽  
Vol 160 (3) ◽  
pp. 118-123
Author(s):  
Takema Kato ◽  
Miki Kawai ◽  
Shunsuke Miyai ◽  
Fumihiko Suzuki ◽  
Makiko Tsutsumi ◽  
...  
Keyword(s):  
Natural Selection ◽  
Cell Lines ◽  
Sex Chromosome ◽  
The Other ◽  
Aneuploid Cell ◽  
Snp Microarray ◽  
Molecular Cytogenetic ◽  
Autosomal Trisomy ◽  
Cytogenetic Analyses ◽  
Mosaic Aneuploidy

We present 2 cases of double mosaic aneuploidy harboring 2 or more different aneuploid cell lines, but no line with a normal chromosome constitution. One of these cases presented mosaicism of sex chromosome aneuploid cell lines (47,XXX/45,X) along with another line containing an autosomal trisomy (47,XX,+8), while the other case showed mosaicism of 2 different autosomal trisomy cell lines (47,XY,+5 and 47,XY,+8). To elucidate the mechanisms underlying these mosaicisms, we conducted molecular cytogenetic analyses. Genotyping data from the SNP microarray indicated that 2 sequential meiotic or early postzygotic segregation errors likely had occurred followed by natural selection. These cases suggest that frequent segregation errors and selection events in the meiotic and early postzygotic stages lead to this condition.

scholarly journals Prenatal Diagnosis and Molecular Cytogenetic Characterization of an Unusual Complex Structural Rearrangement in a Pregnancy Following Intracytoplasmic Sperm Injection (ICSI)

2005 ◽  
Vol 53 (3) ◽  
pp. 351-354 ◽  
Author(s):  
M. Trimborn ◽  
T. Liehr ◽  
B. Belitz ◽  
L. Pfeiffer ◽  
R. Varon ◽  
...  
Keyword(s):  
Intracytoplasmic Sperm Injection ◽  
Organizer Region ◽  
Structural Rearrangement ◽  
Comparative Genomic ◽  
Molecular Cytogenetic ◽  
Structural Aberrations ◽  
Multicolor Banding ◽  
Cytogenetic Characterization ◽  
Cytogenetic Analyses ◽  
Complex Structural

We report on a balanced complex chromosomal aberration detected in a fetus after amniocentesis. The pregnancy was achieved after intracytoplasmic sperm injection. GTG-banding revealed a complex structurally rearranged karyotype with a translocation between chromosomes 5 and 15 and an additional paracentric inversion in the der(15) between bands 5q11.2 and 5q15. Ag-NOR staining showed an interstitial active nuclear organizer region in the der(15). Molecular cytogenetic analyses using whole-chromosome–painting probes, comparative genomic hybridization, and multicolor banding did not point to further structural aberrations or imbalances. Therefore, a complex rearrangement with three breakpoints has occurred, and the karyotype can be described as 46,XX,der(5)t(5;15)(q11.2;p12),der(15)t(5;15)(q11.2;p12)inv(5)(q11.2q15).

scholarly journals Comparative cytogenetic survey of the giant bonytongue Arapaima fish (Osteoglossiformes: Arapaimidae), across different Amazonian and Tocantins/Araguaia River basins

2020 ◽  
Vol 18 (4) ◽  
Author(s):  
Ezequiel A. de Oliveira ◽  
Francisco de M. C. Sassi ◽  
Manolo F. Perez ◽  
Luiz A. C. Bertollo ◽  
Petr Ráb ◽  
...  
Keyword(s):  
River Basins ◽  
Comparative Genomic ◽  
South American ◽  
Molecular Cytogenetic ◽  
Araguaia River ◽  
Rdna Sites ◽  
Cytogenetic Survey ◽  
Acrocentric Chromosomes ◽  
Great Portion

Abstract The South American giant fishes of the genus Arapaima, commonly known as pirarucu, are one of the most iconic among Osteoglossiformes. Previously cytogenetic studies have identified their karyotype characteristics; however, characterization of cytotaxonomic differentiation across their distribution range remains unknown. In this study, we compared chromosomal characteristics using conventional and molecular cytogenetic protocols in pirarucu populations from the Amazon and Tocantins-Araguaia river basins to verify if there is differentiation among representatives of this genus. Our data revealed that individuals from all populations present the same diploid chromosome number 2n=56 and karyotype composed of 14 pairs of meta- to submetacentric and 14 pairs of subtelo- to acrocentric chromosomes. The minor and major rDNA sites are in separate chromosomal pairs, in which major rDNA sites corresponds to large heterochromatic blocks. Comparative genomic hybridizations (CGH) showed that the genome of these populations shared a great portion of repetitive elements, due to a lack of substantial specific signals. Our comparative cytogenetic data analysis of pirarucu suggested that, although significant genetic differences occur among populations, their general karyotype patterns remain conserved.

scholarly journals Molecular cytogenetic characterization and phylogenetic analysis of four Miscanthus species (Poaceae)

2019 ◽  
Vol 13 (3) ◽  
pp. 211-230 ◽  
Author(s):  
Yan-Mei Tang ◽  
Liang Xiao ◽  
Yasir Iqbal ◽  
Jian-Feng Liao ◽  
Long-Qian Xiao ◽  
...  
Keyword(s):  
Genomic Dna ◽  
Phylogenetic Trees ◽  
Repetitive Sequences ◽  
Comparative Genomic ◽  
45S Rdna ◽  
Molecular Cytogenetic ◽  
Rdna Sites ◽  
Molecular Phylogenetic ◽  
Cytogenetic Characterization

Chromosomes of four Miscanthus (Andersson, 1855) species including M. sinensis (Andersson, 1855), M. floridulus (Schumann & Lauterb, 1901), M. sacchariflorus (Hackel, 1882) and M. lutarioriparius (Chen & Renvoize, 2005) were analyzed using sequentially combined PI and DAPI (CPD) staining and fluorescence in situ hybridization (FISH) with 45S rDNA probe. To elucidate the phylogenetic relationship among the four Miscanthus species, the homology of repetitive sequences among the four species was analyzed by comparative genomic in situ hybridization (cGISH). Subsequently four Miscanthus species were clustered based on the internal transcribed spacer (ITS) of 45S rDNA. Molecular cytogenetic karyotypes of the four Miscanthus species were established for the first time using chromosome measurements, fluorochrome bands and 45S rDNA FISH signals, which will provide a cytogenetic tool for the identification of these four species. All the four have the karyotype formula of Miscanthus species, which is 2n = 2x = 38 = 34m(2SAT) + 4sm, and one pair of 45S rDNA sites. The latter were shown as strong red bands by CPD staining. A non-rDNA CPD band emerged in M. floridulus and some blue DAPI bands appeared in M. sinensis and M. floridulus. The hybridization signals of M. floridulus genomic DNA to the chromosomes of M. sinensis and M. lutarioriparius genomic DNA to the chromosomes of M. sacchariflorus were stronger and more evenly distributed than other combinations. Molecular phylogenetic trees showed that M. sinensis and M. floridulus were closest relatives, and M. sacchariflorus and M. lutarioriparius were also closely related. These findings were consistent with the phylogenetic relationships inferred from the cGISH patterns.

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