scholarly journals Comprehensive Identification and Characterization of Long Non-coding RNAs Associated With Rice Black-Streaked Dwarf Virus Infection in Laodelphax striatellus (Fallén) Midgut

2020 ◽  
Vol 11 ◽  
Author(s):  
Jian-Hua Zhang ◽  
Yan Dong ◽  
Wei Wu ◽  
Dian-Shan Yi ◽  
Man Wang ◽  
...  
Keyword(s):  
Virus Infection ◽  
Dwarf Virus ◽  
Laodelphax Striatellus ◽  
Non Coding Rnas ◽  
Identification And Characterization

Genome‐wide identification and characterization of long noncoding RNAs in maize under rice black streaked dwarf virus infection

2021 ◽  
Author(s):  
Weilin Cao ◽  
Ruolin Wang ◽  
Junyuan Cao ◽  
Jiaqi Gao ◽  
Xuechen Zhao ◽  
...  
Keyword(s):  
Virus Infection ◽  
Noncoding Rnas ◽  
Long Noncoding Rnas ◽  
Dwarf Virus ◽  
Genome Wide ◽  
Identification And Characterization

Identification and characterization of long non-coding RNAs in muscle sclerosis of grass carp, Ctenopharyngodon idellus fed with faba bean meal

Aquaculture ◽  
2020 ◽  
Vol 516 ◽  
pp. 734521
Author(s):  
Lian Gan ◽  
Yan-zhi Wang ◽  
Shi-jun Chen ◽  
Zhuo-heng Lin ◽  
Ji-jia Sun ◽  
...  
Keyword(s):  
Faba Bean ◽  
Grass Carp ◽  
Ctenopharyngodon Idellus ◽  
Bean Meal ◽  
Non Coding Rnas ◽  
Identification And Characterization

scholarly journals Identification and characterization of long non-coding RNAs involved in embryo development of Ginkgo biloba

2019 ◽  
Vol 14 (12) ◽  
pp. 1674606 ◽  
Author(s):  
Huiru Jiang ◽  
Zhichao Jia ◽  
Sian Liu ◽  
Beibei Zhao ◽  
Weixing Li ◽  
...  
Keyword(s):  
Embryo Development ◽  
Ginkgo Biloba ◽  
Non Coding Rnas ◽  
Identification And Characterization

scholarly journals Genome-Wide Identification and Characterization of Long Non-Coding RNAs in Peanut

Genes ◽  
2019 ◽  
Vol 10 (7) ◽  
pp. 536 ◽  
Author(s):  
Xiaobo Zhao ◽  
Liming Gan ◽  
Caixia Yan ◽  
Chunjuan Li ◽  
Quanxi Sun ◽  
...  
Keyword(s):  
Large Scale ◽  
Target Genes ◽  
Sequencing Data ◽  
Regulatory Processes ◽  
Genome Wide ◽  
Non Coding Rnas ◽  
Identification And Characterization ◽  
Lower Expression ◽  
Weighted Correlation

Long non-coding RNAs (lncRNAs) are involved in various regulatory processes although they do not encode protein. Presently, there is little information regarding the identification of lncRNAs in peanut (Arachis hypogaea Linn.). In this study, 50,873 lncRNAs of peanut were identified from large-scale published RNA sequencing data that belonged to 124 samples involving 15 different tissues. The average lengths of lncRNA and mRNA were 4335 bp and 954 bp, respectively. Compared to the mRNAs, the lncRNAs were shorter, with fewer exons and lower expression levels. The 4713 co-expression lncRNAs (expressed in all samples) were used to construct co-expression networks by using the weighted correlation network analysis (WGCNA). LncRNAs correlating with the growth and development of different peanut tissues were obtained, and target genes for 386 hub lncRNAs of all lncRNAs co-expressions were predicted. Taken together, these findings can provide a comprehensive identification of lncRNAs in peanut.

scholarly journals Computational Identification and Characterization of Putative miRNAs in Nasonia Species

2010 ◽  
Vol 2 ◽  
pp. IJIS.S4197
Author(s):  
Ganesh Sathyamurthy ◽  
N. Ramachandra Swamy
Keyword(s):  
Statistical Characteristics ◽  
Folding Energy ◽  
Sequential Method ◽  
Mirna Genes ◽  
Non Coding Rnas ◽  
Post Transcriptional Regulation ◽  
Near Future ◽  
Identification And Characterization ◽  
Cross Species Comparison

MicroRNAs are important at post transcriptional regulation in eukaryotes. Nasonia genus is becoming increasingly popular model in present days due to genetic advantages it possesses over Drosophila. Nasonia species are found distributed throughout the world, expect for N. longicornis, and N. giraulti. In this study, we use the sequential method of blasting all known invertebrate miRNA genes against the Nasonia vitripennis, Nasonia longicornis, and Nasonia giraulti genomes. We identify 40, 31 and 29 putative pre-miRNAs and mature sequences in N. vitripennis, N. giraulti and N. longicornis respectively. A cross species comparison of putative miRNA sequences and their statistical characteristics reveals that there are no huge differences between the species, except for few miRNAs which are reported. We also find that the minimal folding energy index for three Nasonia species pre-miRNA's average is around -0.85 ± 0.11. Further, we report that U is predominant at the 5‘ end of mature sequence, which being a typical characteristic of plant miRNAs. Using MiRanda, we predict nearly 471 potential sites in the N. vitripennis genome. Thus concluding our study to be the beginning of understanding the Nasonia's non coding RNAs and may play an important role in effective pest management in near future.

scholarly journals Identification and characterization of long non-coding RNAs in subcutaneous adipose tissue from castrated and intact full-sib pair Huainan male pigs

BMC Genomics ◽  
2017 ◽  
Vol 18 (1) ◽  
Author(s):  
Jing Wang ◽  
Liushuai Hua ◽  
Junfeng Chen ◽  
Jiaqing Zhang ◽  
Xianxiao Bai ◽  
...  
Keyword(s):  
Adipose Tissue ◽  
Subcutaneous Adipose Tissue ◽  
Non Coding Rnas ◽  
Subcutaneous Adipose ◽  
Identification And Characterization

scholarly journals Postexposure Prophylaxis for Human Immunodeficiency Virus Infection after Sexual or Injection Drug Use Exposure: Identification and Characterization of the Source of Exposure

2001 ◽  
Vol 184 (12) ◽  
pp. 1608-1612 ◽  
Author(s):  
Michelle E. Roland ◽  
Jeffrey N. Martin ◽  
Robert M. Grant ◽  
Nicholas S. Hellmann ◽  
Joshua D. Bamberger ◽  
...  
Keyword(s):  
Human Immunodeficiency Virus ◽  
Drug Use ◽  
Virus Infection ◽  
Human Immunodeficiency Virus Infection ◽  
Injection Drug Use ◽  
Injection Drug ◽  
Postexposure Prophylaxis ◽  
Immunodeficiency Virus ◽  
Identification And Characterization

scholarly journals Identification and characterization of a TLR13 gene homologue from Laodelphax striatellus involved in the immune response induced by rice stripe virus

2020 ◽  
Vol 19 (1) ◽  
pp. 183-192 ◽  
Author(s):  
Xue ZHOU ◽  
Jia HU ◽  
Mei-li FU ◽  
Ping JIN ◽  
Yun-ye ZHANG ◽  
...  
Keyword(s):  
Immune Response ◽  
Rice Stripe Virus ◽  
Laodelphax Striatellus ◽  
Gene Homologue ◽  
Identification And Characterization

scholarly journals Identification and characterization of long non-coding RNAs regulating resistant starch biosynthesis in bread wheat (Triticum aestivum L.)

Genomics ◽  
2020 ◽  
Vol 112 (5) ◽  
pp. 3065-3074 ◽  
Author(s):  
Akansha Madhawan ◽  
Ankita Sharma ◽  
Abhishek Bhandawat ◽  
Mohammed Saba Rahim ◽  
Prashant Kumar ◽  
...  
Keyword(s):  
Triticum Aestivum ◽  
Bread Wheat ◽  
Resistant Starch ◽  
Triticum Aestivum L ◽  
Starch Biosynthesis ◽  
Non Coding Rnas ◽  
Identification And Characterization
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