scholarly journals Coral Image Segmentation with Point-Supervision via Latent Dirichlet Allocation with Spatial Coherence

2021 ◽  
Vol 9 (2) ◽  
pp. 157
Author(s):  
Xi Yu ◽  
Bing Ouyang ◽  
Jose C. Principe
Keyword(s):  
Image Segmentation ◽  
Deep Learning ◽  
Latent Dirichlet Allocation ◽  
Spatial Coherence ◽  
Image Data ◽  
Feature Space ◽  
Data Sets ◽  
Marine Animals ◽  
Data Set ◽  
Dirichlet Allocation

Deep neural networks provide remarkable performances on supervised learning tasks with extensive collections of labeled data. However, creating such large well-annotated data sets requires a considerable amount of resources, time and effort, especially for underwater images data sets such as corals and marine animals. Therefore, the overreliance on labels is one of the main obstacles for widespread applications of deep learning methods. In order to overcome this need for large annotated dataset, this paper proposes a label-efficient deep learning framework for image segmentation using only very sparse point-supervision. Our approach employs a latent Dirichlet allocation (LDA) with spatial coherence on feature space to iteratively generate pseudo labels. The method requires, as an initial condition, a Wide Residual Network (WRN) trained with sparse labels and mutual information constraints. The proposed method is evaluated on the sparsely labeled coral image data set collected from the Pulley Ridge region in the Gulf of Mexico. Experiments show that our method can improve image segmentation performance against sparsely labeled samples and achieves better results compared with other semi-supervised approaches.

A Robust Deep Learning Segmentation Method for Hematoma Volumetric Detection in Intracerebral Hemorrhage

Stroke ◽  
2021 ◽  
Author(s):  
Nannan Yu ◽  
He Yu ◽  
Haonan Li ◽  
Nannan Ma ◽  
Chunai Hu ◽  
...  
Keyword(s):  
Computed Tomography ◽  
Image Segmentation ◽  
Deep Learning ◽  
Intracerebral Hemorrhage ◽  
Epidural Hematoma ◽  
Contour Method ◽  
Data Sets ◽  
Segmentation Method ◽  
Data Set ◽  
Testing Data

Background and Purpose: Hematoma volume (HV) is a significant diagnosis for determining the clinical stage and therapeutic approach for intracerebral hemorrhage (ICH). The aim of this study is to develop a robust deep learning segmentation method for the fast and accurate HV analysis using computed tomography. Methods: A novel dimension reduction UNet (DR-UNet) model was developed for computed tomography image segmentation and HV measurement. Two data sets, 512 ICH patients with 12 568 computed tomography slices in the retrospective data set and 50 ICH patients with 1257 slices in the prospective data set, were used for network training, validation, and internal and external testing. Moreover, 13 irregular hematoma cases, 11 subdural and epidural hematoma cases, and 50 different HV cases into 3 groups (<30, 30–60, and >60 mL) were selected to further evaluate the robustness of DR-UNet. The image segmentation performance of DR-UNet was compared with those of UNet, the fuzzy clustering method, and the active contour method. The HV measurement performance was compared using DR-UNet, UNet, and the Coniglobus formula method. Results: Using DR-UNet, the segmentation model achieved a performance similar to that of expert clinicians in 2 independent test data sets containing internal testing data (Dice of 0.861±0.139) and external testing data (Dice of 0.874±0.130). The HV measurement derived from DR-UNet was strongly correlated with that from manual segmentation (R 2 =0.9979; P <0.0001). In the irregularly shaped hematoma group and the subdural and epidural hematoma group, DR-UNet was more robust than UNet in both hematoma segmentation and HV measurement. There is no statistical significance in segmentation accuracy among 3 different HV groups. Conclusions: DR-UNet can segment hematomas from the computed tomography scans of ICH patients and quantify the HV with better accuracy and greater efficiency than the main existing methods and with similar performance to expert clinicians. Due to robust performance and stable segmentation on different ICHs, DR-UNet could facilitate the development of deep learning systems for a variety of clinical applications.

scholarly journals Evaluation of Image Forgery Detection Using Multi-Scale Weber Local Descriptors

2015 ◽  
Vol 24 (04) ◽  
pp. 1540016 ◽  
Author(s):  
Muhammad Hussain ◽  
Sahar Qasem ◽  
George Bebis ◽  
Ghulam Muhammad ◽  
Hatim Aboalsamh ◽  
...  
Keyword(s):  
Digital Image ◽  
Image Data ◽  
Feature Space ◽  
Detection Methods ◽  
Support Vector ◽  
Data Sets ◽  
Forgery Detection ◽  
Data Set ◽  
Multi Scale ◽  
Copy Move Forgery Detection

Due to the maturing of digital image processing techniques, there are many tools that can forge an image easily without leaving visible traces and lead to the problem of the authentication of digital images. Based on the assumption that forgery alters the texture micro-patterns in a digital image and texture descriptors can be used for modeling this change; we employed two stat-of-the-art local texture descriptors: multi-scale Weber's law descriptor (multi-WLD) and multi-scale local binary pattern (multi-LBP) for splicing and copy-move forgery detection. As the tamper traces are not visible to open eyes, so the chrominance components of an image encode these traces and were used for modeling tamper traces with the texture descriptors. To reduce the dimension of the feature space and get rid of redundant features, we employed locally learning based (LLB) algorithm. For identifying an image as authentic or tampered, Support vector machine (SVM) was used. This paper presents the thorough investigation for the validation of this forgery detection method. The experiments were conducted on three benchmark image data sets, namely, CASIA v1.0, CASIA v2.0, and Columbia color. The experimental results showed that the accuracy rate of multi-WLD based method was 94.19% on CASIA v1.0, 96.52% on CASIA v2.0, and 94.17% on Columbia data set. It is not only significantly better than multi-LBP based method, but also it outperforms other stat-of-the-art similar forgery detection methods.

scholarly journals Biological data annotation via a human-augmenting AI-based labeling system

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Douwe van der Wal ◽  
Iny Jhun ◽  
Israa Laklouk ◽  
Jeff Nirschl ◽  
Lara Richer ◽  
...  
Keyword(s):  
Deep Learning ◽  
Large Scale ◽  
Microscopic Analysis ◽  
Image Data ◽  
Cell Types ◽  
Biological Data ◽  
Data Sets ◽  
Data Set ◽  
Data Annotation ◽  
Labeling System

AbstractBiology has become a prime area for the deployment of deep learning and artificial intelligence (AI), enabled largely by the massive data sets that the field can generate. Key to most AI tasks is the availability of a sufficiently large, labeled data set with which to train AI models. In the context of microscopy, it is easy to generate image data sets containing millions of cells and structures. However, it is challenging to obtain large-scale high-quality annotations for AI models. Here, we present HALS (Human-Augmenting Labeling System), a human-in-the-loop data labeling AI, which begins uninitialized and learns annotations from a human, in real-time. Using a multi-part AI composed of three deep learning models, HALS learns from just a few examples and immediately decreases the workload of the annotator, while increasing the quality of their annotations. Using a highly repetitive use-case—annotating cell types—and running experiments with seven pathologists—experts at the microscopic analysis of biological specimens—we demonstrate a manual work reduction of 90.60%, and an average data-quality boost of 4.34%, measured across four use-cases and two tissue stain types.

scholarly journals The Active Segmentation Platform for Microscopic Image Classification and Segmentation

2021 ◽  
Vol 11 (12) ◽  
pp. 1645
Author(s):  
Sumit K. Vohra ◽  
Dimiter Prodanov
Keyword(s):  
Machine Learning ◽  
Image Segmentation ◽  
Image Classification ◽  
Domain Knowledge ◽  
Feature Space ◽  
Ground Truth ◽  
Classification Problem ◽  
Data Sets ◽  
Learning Approaches ◽  
Data Set

Image segmentation still represents an active area of research since no universal solution can be identified. Traditional image segmentation algorithms are problem-specific and limited in scope. On the other hand, machine learning offers an alternative paradigm where predefined features are combined into different classifiers, providing pixel-level classification and segmentation. However, machine learning only can not address the question as to which features are appropriate for a certain classification problem. The article presents an automated image segmentation and classification platform, called Active Segmentation, which is based on ImageJ. The platform integrates expert domain knowledge, providing partial ground truth, with geometrical feature extraction based on multi-scale signal processing combined with machine learning. The approach in image segmentation is exemplified on the ISBI 2012 image segmentation challenge data set. As a second application we demonstrate whole image classification functionality based on the same principles. The approach is exemplified using the HeLa and HEp-2 data sets. Obtained results indicate that feature space enrichment properly balanced with feature selection functionality can achieve performance comparable to deep learning approaches. In summary, differential geometry can substantially improve the outcome of machine learning since it can enrich the underlying feature space with new geometrical invariant objects.

scholarly journals EXACT: a collaboration toolset for algorithm-aided annotation of images with annotation version control

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Christian Marzahl ◽  
Marc Aubreville ◽  
Christof A. Bertram ◽  
Jennifer Maier ◽  
Christian Bergler ◽  
...  
Keyword(s):  
Deep Learning ◽  
Scientific Progress ◽  
Image Data ◽  
Version Control ◽  
Data Sets ◽  
Data Set ◽  
Research Areas ◽  
Slide Image ◽  
Version Control System ◽  
Mitotic Figures

AbstractIn many research areas, scientific progress is accelerated by multidisciplinary access to image data and their interdisciplinary annotation. However, keeping track of these annotations to ensure a high-quality multi-purpose data set is a challenging and labour intensive task. We developed the open-source online platform EXACT (EXpert Algorithm Collaboration Tool) that enables the collaborative interdisciplinary analysis of images from different domains online and offline. EXACT supports multi-gigapixel medical whole slide images as well as image series with thousands of images. The software utilises a flexible plugin system that can be adapted to diverse applications such as counting mitotic figures with a screening mode, finding false annotations on a novel validation view, or using the latest deep learning image analysis technologies. This is combined with a version control system which makes it possible to keep track of changes in the data sets and, for example, to link the results of deep learning experiments to specific data set versions. EXACT is freely available and has already been successfully applied to a broad range of annotation tasks, including highly diverse applications like deep learning supported cytology scoring, interdisciplinary multi-centre whole slide image tumour annotation, and highly specialised whale sound spectroscopy clustering.

Deep Learning Approaches for Whiteboard Image Quality Enhancement

2019 ◽  
Vol 2019 (1) ◽  
pp. 360-368
Author(s):  
Mekides Assefa Abebe ◽  
Jon Yngve Hardeberg
Keyword(s):  
Deep Learning ◽  
Image Quality ◽  
Image Data ◽  
Quality Enhancement ◽  
Network Architectures ◽  
Learning Approaches ◽  
Data Set ◽  
Image Quality Enhancement ◽  
Processing Techniques ◽  
White Balancing

Different whiteboard image degradations highly reduce the legibility of pen-stroke content as well as the overall quality of the images. Consequently, different researchers addressed the problem through different image enhancement techniques. Most of the state-of-the-art approaches applied common image processing techniques such as background foreground segmentation, text extraction, contrast and color enhancements and white balancing. However, such types of conventional enhancement methods are incapable of recovering severely degraded pen-stroke contents and produce artifacts in the presence of complex pen-stroke illustrations. In order to surmount such problems, the authors have proposed a deep learning based solution. They have contributed a new whiteboard image data set and adopted two deep convolutional neural network architectures for whiteboard image quality enhancement applications. Their different evaluations of the trained models demonstrated their superior performances over the conventional methods.

Human Activity Recognition using Fourier Transform Inspired Deep Learning Combination Model

2019 ◽  
Vol 9 (1) ◽  
pp. 16-31
Author(s):  
Kyungkoo Jun
Keyword(s):  
Fourier Transform ◽  
Deep Learning ◽  
Short Term Memory ◽  
Window Size ◽  
Sensor Data ◽  
Data Sets ◽  
Data Set ◽  
Proposed Model ◽  
Testing Data ◽  
Labeling Scheme

Background & Objective: This paper proposes a Fourier transform inspired method to classify human activities from time series sensor data. Methods: Our method begins by decomposing 1D input signal into 2D patterns, which is motivated by the Fourier conversion. The decomposition is helped by Long Short-Term Memory (LSTM) which captures the temporal dependency from the signal and then produces encoded sequences. The sequences, once arranged into the 2D array, can represent the fingerprints of the signals. The benefit of such transformation is that we can exploit the recent advances of the deep learning models for the image classification such as Convolutional Neural Network (CNN). Results: The proposed model, as a result, is the combination of LSTM and CNN. We evaluate the model over two data sets. For the first data set, which is more standardized than the other, our model outperforms previous works or at least equal. In the case of the second data set, we devise the schemes to generate training and testing data by changing the parameters of the window size, the sliding size, and the labeling scheme. Conclusion: The evaluation results show that the accuracy is over 95% for some cases. We also analyze the effect of the parameters on the performance.

scholarly journals Investigating the impact of pre-processing techniques and pre-trained word embeddings in detecting Arabic health information on social media

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Yahya Albalawi ◽  
Jim Buckley ◽  
Nikola S. Nikolov
Keyword(s):  
Social Media ◽  
Deep Learning ◽  
Comprehensive Evaluation ◽  
Classification Problem ◽  
Data Sets ◽  
Word Embeddings ◽  
Data Set ◽  
Lower Accuracy ◽  
Health Related ◽  
The Impact

AbstractThis paper presents a comprehensive evaluation of data pre-processing and word embedding techniques in the context of Arabic document classification in the domain of health-related communication on social media. We evaluate 26 text pre-processings applied to Arabic tweets within the process of training a classifier to identify health-related tweets. For this task we use the (traditional) machine learning classifiers KNN, SVM, Multinomial NB and Logistic Regression. Furthermore, we report experimental results with the deep learning architectures BLSTM and CNN for the same text classification problem. Since word embeddings are more typically used as the input layer in deep networks, in the deep learning experiments we evaluate several state-of-the-art pre-trained word embeddings with the same text pre-processing applied. To achieve these goals, we use two data sets: one for both training and testing, and another for testing the generality of our models only. Our results point to the conclusion that only four out of the 26 pre-processings improve the classification accuracy significantly. For the first data set of Arabic tweets, we found that Mazajak CBOW pre-trained word embeddings as the input to a BLSTM deep network led to the most accurate classifier with F1 score of 89.7%. For the second data set, Mazajak Skip-Gram pre-trained word embeddings as the input to BLSTM led to the most accurate model with F1 score of 75.2% and accuracy of 90.7% compared to F1 score of 90.8% achieved by Mazajak CBOW for the same architecture but with lower accuracy of 70.89%. Our results also show that the performance of the best of the traditional classifier we trained is comparable to the deep learning methods on the first dataset, but significantly worse on the second dataset.

Mining numerical measure of consumers’ product evaluation expressed in words based on latent Dirichlet allocation

2021 ◽  
Vol ahead-of-print (ahead-of-print) ◽  
Author(s):  
Ziang Wang ◽  
Feng Yang
Keyword(s):  
Latent Dirichlet Allocation ◽  
Product Evaluation ◽  
Online Reviews ◽  
Product Evaluations ◽  
Product Attributes ◽  
Data Set ◽  
Content Type ◽  
Face To Face ◽  
Online Retailers ◽  
Dirichlet Allocation

Purpose It has always been a hot topic for online retailers to obtain consumers’ product evaluations from massive online reviews. In the process of online shopping, there is no face-to-face interaction between online retailers and customers. After collecting online reviews left by customers, online retailers are eager to acquire answers to some questions. For example, which product attributes will attract consumers? Or which step brings a better experience to consumers during the process of shopping? This paper aims to associate the latent Dirichlet allocation (LDA) model with the consumers’ attitude and provides a method to calculate the numerical measure of consumers’ product evaluation expressed in each word. Design/methodology/approach First, all possible pairs of reviews are organized as a document to build the corpus. After that, latent topics of the traditional LDA model noted as the standard LDA model, are separated into shared and differential topics. Then, the authors associate the model with consumers’ attitudes toward each review which is distinguished as positive review and non-positive review. The product evaluation reflected in consumers’ binary attitude is expanded to each word that appeared in the corpus. Finally, a variational optimization is introduced to calculate parameters mentioned in the expanded LDA model. Findings The experiment’s result illustrates that the LDA model in the research noted as an expanded LDA model, can successfully assign sufficient probability with words related to products attributes or consumers’ product evaluation. Compared with the standard LDA model, the expanded model intended to assign higher probability with words, which have a higher ranking within each topic. Besides, the expanded model also has higher precision on the prediction set, which shows that breaking down the topics into two categories fits better on the data set than the standard LDA model. The product evaluation of each word is calculated by the expanded model and depicted at the end of the experiment. Originality/value This research provides a new method to calculate consumers’ product evaluation from reviews in the level of words. Words may be used to describe product attributes or consumers’ experiences in reviews. Assigning words with numerical measures can analyze consumers’ products evaluation quantitatively. Besides, words are labeled themselves, they can also be ranked if a numerical measure is given. Online retailers can benefit from the result for label choosing, advertising or product recommendation.

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