Continuous Monitoring of Cotton Stem Water Potential using Sentinel-2 Imagery

Monitoring cotton status during the growing season is critical in increasing production efficiency. The water status in cotton is a key factor for yield and cotton quality. Stem water potential (SWP) is a precise indicator for assessing cotton water status. Satellite remote sensing is an effective approach for monitoring cotton growth at a large scale. The aim of this study is to estimate cotton water stress at a high temporal frequency and at a large scale. In this study, we measured midday SWP samples according to the acquisition dates of Sentinel-2 images and used them to build linear-regression-based and machine-learning-based models to estimate cotton water stress during the growing season (June to August, 2018). For the linear-regression-based method, we estimated SWP based on different Sentinel-2 spectral bands and vegetation indices, where the normalized difference index 45 (NDI45) achieved the best performance (R2 = 0.6269; RMSE = 3.6802 (-1*swp (bars))). For the machine-learning-based method, we used random forest regression to estimate SWP and received even better results (R2 = 0.6709; RMSE = 3.3742 (-1*swp (bars))). To find the best selection of input variables for the machine-learning-based approach, we tried three different data input datasets, including (1) 9 original spectral bands (e.g., blue, green, red, red edge, near infrared (NIR), and shortwave infrared (SWIR)), (2) 21 vegetation indices, and (3) a combination of original Sentinel-2 spectral bands and vegetation indices. The highest accuracy was achieved when only the original spectral bands were used. We also found the SWIR and red edge band were the most important spectral bands, and the vegetation indices based on red edge and NIR bands were particularly helpful. Finally, we applied the best approach for the linear-regression-based and the machine-learning-based methods to generate cotton water potential maps at a large scale and high temporal frequency. Results suggests that the methods developed here has the potential for continuous monitoring of SWP at large scales and the machine-learning-based method is preferred.

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Towards Vine Water Status Monitoring on a Large Scale Using Sentinel-2 Images

Remote Sensing ◽

10.3390/rs13091837 ◽

2021 ◽

Vol 13 (9) ◽

pp. 1837

Author(s):

Eve Laroche-Pinel ◽

Sylvie Duthoit ◽

Mohanad Albughdadi ◽

Anne D. Costard ◽

Jacques Rousseau ◽

...

Keyword(s):

Climate Change ◽

Water Potential ◽

Large Scale ◽

Water Status ◽

Vegetation Indices ◽

Machine Learning Algorithms ◽

Severe Drought ◽

Stem Water Potential ◽

Stem Water ◽

Sentinel 2

Wine growing needs to adapt to confront climate change. In fact, the lack of water becomes more and more important in many regions. Whereas vineyards have been located in dry areas for decades, so they need special resilient varieties and/or a sufficient water supply at key development stages in case of severe drought. With climate change and the decrease of water availability, some vineyard regions face difficulties because of unsuitable variety, wrong vine management or due to the limited water access. Decision support tools are therefore required to optimize water use or to adapt agronomic practices. This study aimed at monitoring vine water status at a large scale with Sentinel-2 images. The goal was to provide a solution that would give spatialized and temporal information throughout the season on the water status of the vines. For this purpose, thirty six plots were monitored in total over three years (2018, 2019 and 2020). Vine water status was measured with stem water potential in field measurements from pea size to ripening stage. Simultaneously Sentinel-2 images were downloaded and processed to extract band reflectance values and compute vegetation indices. In our study, we tested five supervised regression machine learning algorithms to find possible relationships between stem water potential and data acquired from Sentinel-2 images (bands reflectance values and vegetation indices). Regression model using Red, NIR, Red-Edge and SWIR bands gave promising result to predict stem water potential (R2=0.40, RMSE=0.26).

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Monitoring crop N status by using red edge-based indices

Advances in Animal Biosciences ◽

10.1017/s2040470017000243 ◽

2017 ◽

Vol 8 (2) ◽

pp. 338-342 ◽

Cited By ~ 4

Author(s):

J. González-Piqueras ◽

H. Lopez-Corcoles ◽

S. Sánchez ◽

J. Villodre ◽

V. Bodas ◽

...

Keyword(s):

Vegetation Indices ◽

Growth Cycle ◽

N Content ◽

Spectral Bands ◽

Red Edge ◽

Use Efficiency ◽

Edge Based ◽

Linear Correlations ◽

N Status ◽

Sentinel 2

Intensive agriculture has the objective to increase nutrients use efficiency. Nitrogen (N) is a key nutrient for crops and the estimations of crop N status allow adjusting the fertilization levels to crop requirements, while reducing the environmental costs and optimizing the benefits for farmers. In this work the N status of wheat in a commercial plot has been monitored, varying the N supply taking into account the variability of the soil. The N content in the cover has been monitored simultaneously by sampling at field level and by using vegetation indices based on reflectance in the red-edge band. The results of the field campaign along a crop growth cycle show that the REP, MTCI, AIVI and CCCI calculated from narrow spectral bands show good linear correlations (R2>0.93) with respect to N content (g·m−2). These indices are stable when passing to broad bands as the case of Sentinel 2 with R2>0.9.

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Comparison of Machine Learning Methods for Leaf Nitrogen Estimation in Corn Using Multispectral UAV Images

Transactions of the ASABE ◽

10.13031/trans.14305 ◽

2021 ◽

Vol 64 (6) ◽

pp. 2089-2101

Author(s):

Razieh Barzin ◽

Hamid Kamangir ◽

Ganesh C. Bora

Keyword(s):

Machine Learning ◽

Random Forest ◽

Vegetation Indices ◽

Leaf Nitrogen ◽

Gradient Boosting ◽

N Content ◽

Spectral Bands ◽

Red Edge ◽

Leaf N Content ◽

Leaf N

HighlightsLeaf nitrogen percentage in corn was estimated using various vegetation indices derived from UAVs.Eight machine learning methods were compared to find the most accurate model for nitrogen estimation.The most influential vegetation indices were determined for estimation of leaf nitrogen.Abstract. Nitrogen (N) is the most critical component of healthy plants. It has a significant impact on photosynthesis and plant reproduction. Physicochemical characteristics of plants such as leaf N content can be estimated spatially and temporally because of the latest developments in multispectral sensing technology and machine learning (ML) methods. The objective of this study was to use spectral data for leaf N estimation in corn to compare different ML models and find the best-fitted model. Moreover, the performance of vegetation indices (VIs) and spectral wavelengths were compared individually and collectively to determine if combinations of VIs substantially improved the results as compared to the original spectral data. This study was conducted at a Mississippi State University corn field that was divided into 16 plots with four different N treatments (0, 90, 180, and 270 kg ha-1). The bare soil pixels were removed from the multispectral images, and 26 VIs were calculated based on five spectral bands: blue, green, red, red-edge, and near-infrared (NIR). The 26 VIs and five spectral bands obtained from a red-edge multispectral sensor mounted on an unmanned aerial vehicle (UAV) were analyzed to develop ML models for leaf %N estimation of corn. The input variables used in these models had the most impact on chlorophyll and N content and high correlation with leaf N content. Eight ML algorithms (random forest, gradient boosting, support vector machine, multi-layer perceptron, ridge regression, lasso regression, and elastic net) were applied to three different categories of variables. The results show that gradient boosting and random forest were the best-fitted models to estimate leaf %N, with about an 80% coefficient of determination for the different categories of variables. Moreover, adding VIs to the spectral bands improved the results. The combination of SCCCI, NDRE, and red-edge had the largest coefficient of determination (R2) in comparison to the other categories of variables used to predict leaf %N content in corn. Keywords: Corn, Gradient boosting, Machine learning, Multispectral imagery, Nitrogen estimation, Random forest, UAV, Vegetation index.

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ESTIMATION OF MANGROVE FOREST ABOVEGROUND BIOMASS USING MULTISPECTRAL BANDS, VEGETATION INDICES AND BIOPHYSICAL VARIABLES DERIVED FROM OPTICAL SATELLITE IMAGERIES: RAPIDEYE, PLANETSCOPE AND SENTINEL-2

ISPRS Annals of Photogrammetry Remote Sensing and Spatial Information Sciences ◽

10.5194/isprs-annals-iv-3-29-2018 ◽

2018 ◽

Vol IV-3 ◽

pp. 29-36 ◽

Cited By ~ 9

Author(s):

Alvin Balidoy Baloloy ◽

Ariel Conferido Blanco ◽

Christian Gumbao Candido ◽

Reginal Jay Labadisos Argamosa ◽

John Bart Lovern Caboboy Dumalag ◽

...

Keyword(s):

Linear Regression ◽

Mangrove Forest ◽

Field Data ◽

Vegetation Index ◽

Prediction Models ◽

Vegetation Indices ◽

Satellite Systems ◽

Red Edge ◽

Simple Ratio ◽

Sentinel 2

Aboveground biomass estimation (AGB) is essential in determining the environmental and economic values of mangrove forests. Biomass prediction models can be developed through integration of remote sensing, field data and statistical models. This study aims to assess and compare the biomass predictor potential of multispectral bands, vegetation indices and biophysical variables that can be derived from three optical satellite systems: the Sentinel-2 with 10&thinsp;m, 20&thinsp;m and 60&thinsp;m resolution; RapidEye with 5m resolution and PlanetScope with 3m ground resolution. Field data for biomass were collected from a Rhizophoraceae-dominated mangrove forest in Masinloc, Zambales, Philippines where 30 test plots (1.2&thinsp;ha) and 5 validation plots (0.2&thinsp;ha) were established. Prior to the generation of indices, images from the three satellite systems were pre-processed using atmospheric correction tools in SNAP (Sentinel-2), ENVI (RapidEye) and python (PlanetScope). The major predictor bands tested are Blue, Green and Red, which are present in the three systems; and Red-edge band from Sentinel-2 and Rapideye. The tested vegetation index predictors are Normalized Differenced Vegetation Index (NDVI), Soil-adjusted Vegetation Index (SAVI), Green-NDVI (GNDVI), Simple Ratio (SR), and Red-edge Simple Ratio (SRre). The study generated prediction models through conventional linear regression and multivariate regression. Higher coefficient of determination (r2) values were obtained using multispectral band predictors for Sentinel-2 (r2&thinsp;=&thinsp;0.89) and Planetscope (r2&thinsp;=&thinsp;0.80); and vegetation indices for RapidEye (r2&thinsp;=&thinsp;0.92). Multivariate Adaptive Regression Spline (MARS) models performed better than the linear regression models with r2 ranging from 0.62 to 0.92. Based on the r2 and root-mean-square errors (RMSE’s), the best biomass prediction model per satellite were chosen and maps were generated. The accuracy of predicted biomass maps were high for both Sentinel-2 (r2&thinsp;=&thinsp;0.92) and RapidEye data (r2&thinsp;=&thinsp;0.91).

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Comparison of Capability of SAR and Optical Data in Mapping Forest above Ground Biomass Based on Machine Learning

Environmental Sciences Proceedings ◽

10.3390/iecg2020-07916 ◽

2020 ◽

Vol 5 (1) ◽

pp. 13

Author(s):

Negar Tavasoli ◽

Hossein Arefi

Keyword(s):

Machine Learning ◽

Carbon Stock ◽

Vegetation Indices ◽

Forest Biomass ◽

Principal Component ◽

Optical Data ◽

Above Ground Biomass ◽

Ground Biomass ◽

Texture Characteristics ◽

Sentinel 2

Assessment of forest above ground biomass (AGB) is critical for managing forest and understanding the role of forest as source of carbon fluxes. Recently, satellite remote sensing products offer the chance to map forest biomass and carbon stock. The present study focuses on comparing the potential use of combination of ALOSPALSAR and Sentinel-1 SAR data, with Sentinel-2 optical data to estimate above ground biomass and carbon stock using Genetic-Random forest machine learning (GA-RF) algorithm. Polarimetric decompositions, texture characteristics and backscatter coefficients of ALOSPALSAR and Sentinel-1, and vegetation indices, tasseled cap, texture parameters and principal component analysis (PCA) of Sentinel-2 based on measured AGB samples were used to estimate biomass. The overall coefficient (R2) of AGB modelling using combination of ALOSPALSAR and Sentinel-1 data, and Sentinel-2 data were respectively 0.70 and 0.62. The result showed that Combining ALOSPALSAR and Sentinel-1 data to predict AGB by using GA-RF model performed better than Sentinel-2 data.

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Assessing Leaf Biomass of Agave sisalana Using Sentinel-2 Vegetation Indices

Remote Sensing ◽

10.3390/rs13020233 ◽

2021 ◽

Vol 13 (2) ◽

pp. 233

Author(s):

Ilja Vuorinne ◽

Janne Heiskanen ◽

Petri K. E. Pellikka

Keyword(s):

Near Infrared ◽

Vegetation Indices ◽

Fibre Production ◽

Additive Models ◽

Leaf Biomass ◽

Ground Vegetation ◽

Perennial Crop ◽

Red Edge ◽

Agave Sisalana ◽

Sentinel 2

Biomass is a principal variable in crop monitoring and management and in assessing carbon cycling. Remote sensing combined with field measurements can be used to estimate biomass over large areas. This study assessed leaf biomass of Agave sisalana (sisal), a perennial crop whose leaves are grown for fibre production in tropical and subtropical regions. Furthermore, the residue from fibre production can be used to produce bioenergy through anaerobic digestion. First, biomass was estimated for 58 field plots using an allometric approach. Then, Sentinel-2 multispectral satellite imagery was used to model biomass in an 8851-ha plantation in semi-arid south-eastern Kenya. Generalised Additive Models were employed to explore how well biomass was explained by various spectral vegetation indices (VIs). The highest performance (explained deviance = 76%, RMSE = 5.15 Mg ha−1) was achieved with ratio and normalised difference VIs based on the green (R560), red-edge (R740 and R783), and near-infrared (R865) spectral bands. Heterogeneity of ground vegetation and resulting background effects seemed to limit model performance. The best performing VI (R740/R783) was used to predict plantation biomass that ranged from 0 to 46.7 Mg ha−1 (mean biomass 10.6 Mg ha−1). The modelling showed that multispectral data are suitable for assessing sisal leaf biomass at the plantation level and in individual blocks. Although these results demonstrate the value of Sentinel-2 red-edge bands at 20-m resolution, the difference from the best model based on green and near-infrared bands at 10-m resolution was rather small.

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Status of Phenological Research Using Sentinel-2 Data: A Review

Remote Sensing ◽

10.3390/rs12172760 ◽

2020 ◽

Vol 12 (17) ◽

pp. 2760

Author(s):

Gourav Misra ◽

Fiona Cawkwell ◽

Astrid Wingler

Keyword(s):

Vegetation Index ◽

Temporal Frequency ◽

Short Wave ◽

Current State ◽

Red Edge ◽

Natural Grasslands ◽

Wide Range ◽

Normalised Difference Vegetation Index ◽

Satellite Sensors ◽

Sentinel 2

Remote sensing of plant phenology as an indicator of climate change and for mapping land cover has received significant scientific interest in the past two decades. The advancing of spring events, the lengthening of the growing season, the shifting of tree lines, the decreasing sensitivity to warming and the uniformity of spring across elevations are a few of the important indicators of trends in phenology. The Sentinel-2 satellite sensors launched in June 2015 (A) and March 2017 (B), with their high temporal frequency and spatial resolution for improved land mapping missions, have contributed significantly to knowledge on vegetation over the last three years. However, despite the additional red-edge and short wave infra-red (SWIR) bands available on the Sentinel-2 multispectral instruments, with improved vegetation species detection capabilities, there has been very little research on their efficacy to track vegetation cover and its phenology. For example, out of approximately every four papers that analyse normalised difference vegetation index (NDVI) or enhanced vegetation index (EVI) derived from Sentinel-2 imagery, only one mentions either SWIR or the red-edge bands. Despite the short duration that the Sentinel-2 platforms have been operational, they have proved their potential in a wide range of phenological studies of crops, forests, natural grasslands, and other vegetated areas, and in particular through fusion of the data with those from other sensors, e.g., Sentinel-1, Landsat and MODIS. This review paper discusses the current state of vegetation phenology studies based on the first five years of Sentinel-2, their advantages, limitations, and the scope for future developments.

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QUBO formulations for training machine learning models

Scientific Reports ◽

10.1038/s41598-021-89461-4 ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Prasanna Date ◽

Davis Arthur ◽

Lauren Pusey-Nazzaro

Keyword(s):

Machine Learning ◽

Linear Regression ◽

Large Scale ◽

Support Vector ◽

Quantum Computers ◽

Np Hard ◽

Learning Models ◽

Moore’S Law ◽

Moore's Law ◽

Machine Learning Models

AbstractTraining machine learning models on classical computers is usually a time and compute intensive process. With Moore’s law nearing its inevitable end and an ever-increasing demand for large-scale data analysis using machine learning, we must leverage non-conventional computing paradigms like quantum computing to train machine learning models efficiently. Adiabatic quantum computers can approximately solve NP-hard problems, such as the quadratic unconstrained binary optimization (QUBO), faster than classical computers. Since many machine learning problems are also NP-hard, we believe adiabatic quantum computers might be instrumental in training machine learning models efficiently in the post Moore’s law era. In order to solve problems on adiabatic quantum computers, they must be formulated as QUBO problems, which is very challenging. In this paper, we formulate the training problems of three machine learning models—linear regression, support vector machine (SVM) and balanced k-means clustering—as QUBO problems, making them conducive to be trained on adiabatic quantum computers. We also analyze the computational complexities of our formulations and compare them to corresponding state-of-the-art classical approaches. We show that the time and space complexities of our formulations are better (in case of SVM and balanced k-means clustering) or equivalent (in case of linear regression) to their classical counterparts.

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