Topographic Analysis of Intertidal Polychaete Reefs (Sabellaria alveolata) at a Very High Spatial Resolution

In temperate coastal regions of Western Europe, the polychaete Sabellaria alveolata (Linné) builds large intertidal reefs of several hectares on soft-bottom substrates. These reefs are protected by the European Habitat Directive EEC/92/43 under the status of biogenic structures hosting a high biodiversity and providing ecological functions such as protection against coastal erosion. As an alternative to time-consuming field campaigns, a UAV-based Structure-from-Motion photogrammetric survey was carried out in October 2020 over Noirmoutier Island (France) where the second-largest known European reef is located in a tidal delta. A DJI Phantom 4 Multispectral UAV provided a topographic dataset at very high resolutions of 5 cm/pixel for the Digital Surface Model (DSM) and 2.63 cm/pixel for the multispectral orthomosaic images. The reef footprint was mapped using a combination of two topographic indices: the Topographic Openness Index and the Topographic Position Index. The reef structures covered an area of 8.15 ha, with 89% corresponding to the main reef composed of connected and continuous biogenic structures, 7.6% of large isolated structures (<60 m2), and 4.4% of small isolated reef clumps (<2 m2). To further describe the topographic complexity of the reef, the Geomorphon landform classification was used. The spatial distribution of tabular platforms considered as a healthy stage of the reef in contrast to a degraded stage was mapped with a proxy that consists in comparing the reef volume to a theoretical tabular-shaped reef volume. Epibionts colonizing the reef (macroalgae, mussels, and oysters) were also mapped by combining multispectral indices such as the Normalised Difference Vegetation Index and simple band ratios with topographic indices. A confusion matrix showed that macroalgae and mussels were satisfactorily identified but that oysters could not be detected by an automated procedure due to their spectral complexity. The topographic indices used in this work should now be further exploited to propose a health index for these large intertidal reefs.

Effects of Content of Soil Rock Fragments on Soil Erodibility in China

Soil erosion is serious in China—the soil in plateau and mountain areas contain a large of rock fragments, and their content and distribution have an important influence on soil erosion. However, there are still no complete results for calculating soil erodibility factor (K) that have corrected rock fragments in China. In this paper, the data available on rock fragments in the soil profile (RFP); rock fragments on the surface of the soil (RFS); and environmental factors such as elevation, terrain relief, slope, vegetation coverage (characterised by normalised difference vegetation index, NDVI), land use, precipitation, temperature, and soil type were used to explore the effects of content of soil rock fragments on calculating of K in China. The correlation analysis, typical sampling area analysis, and redundancy analysis were applied to analyse the effects of content of soil rock fragments on calculating of K and its relationship with environment factors. The results showed that (1) The rock fragments in the soil profile (RFP) increased K. The rock fragments on the surface (RFS) of the soil reduced K. The effect of both RFP and RFS reduced K. (2) The effect of rock fragments on K was most affected by elevation, followed by terrain relief, NDVI, slope, soil type, temperature, and precipitation, but had little correlation with land use. (3) The result of redundancy analysis showed elevation to be the main predominant factor of the effect of rock fragments on K. This study fully considered the effect of rock fragments on calculating of K and carried out a quantitative analysis of the factors affecting the effect of rock fragments on K, so as to provide necessary scientific basis for estimating K and evaluating soil erosion status in China more accurately.

Dissecting the Genetics of Early Vigour to Design Drought-Adapted Wheat

Due to the climate change and an increased frequency of drought, it is of enormous importance to identify and to develop traits that result in adaptation and in improvement of crop yield stability in drought-prone regions with low rainfall. Early vigour, defined as the rapid development of leaf area in early developmental stages, is reported to contribute to stronger plant vitality, which, in turn, can enhance resilience to erratic drought periods. Furthermore, early vigour improves weed competitiveness and nutrient uptake. Here, two sets of a multi-reference nested association mapping (MR-NAM) population of bread wheat (Triticum aestivum ssp. aestivum L.) were used to investigate early vigour in a rain-fed field environment for 3 years, and additionally assessed under controlled conditions in a greenhouse experiment. The normalised difference vegetation index (NDVI) calculated from red/infrared light reflectance was used to quantify early vigour in the field, revealing a correlation (p &lt; 0.05; r = 0.39) between the spectral measurement and the length of the second leaf. Under controlled environmental conditions, the measured projected leaf area, using a green-pixel counter, was also correlated to the leaf area of the second leaf (p &lt; 0.05; r = 0.38), as well as to the recorded biomass (p &lt; 0.01; r = 0.71). Subsequently, genetic determination of early vigour was tested by conducting a genome-wide association study (GWAS) for the proxy traits, revealing 42 markers associated with vegetation index and two markers associated with projected leaf area. There are several quantitative trait loci that are collocated with loci for plant developmental traits including plant height on chromosome 2D (log10 (P) = 3.19; PVE = 0.035), coleoptile length on chromosome 1B (–log10 (P) = 3.24; PVE = 0.112), as well as stay-green and vernalisation on chromosome 5A (–log10 (P) = 3.14; PVE = 0.115).

Informing Equitable Water and Food Policies through Accurate Spatial Information on Irrigated Areas in Smallholder Farming Systems

Accurate information on irrigated areas’ spatial distribution and extent are crucial in enhancing agricultural water productivity, water resources management, and formulating strategic policies that enhance water and food security and ecologically sustainable development. However, data are typically limited for smallholder irrigated areas, which is key to achieving social equity and equal distribution of financial resources. This study addressed this gap by delineating disaggregated smallholder and commercial irrigated areas through the random forest algorithm, a non-parametric machine learning classifier. Location within or outside former apartheid “homelands” was taken as a proxy for smallholder, and commercial irrigation. Being in a medium rainfall area, the huge irrigation potential of the Inkomati-Usuthu Water Management Area (UWMA) is already well developed for commercial crop production outside former homelands. However, information about the spatial distribution and extent of irrigated areas within former homelands, which is largely informal, was missing. Therefore, we first classified cultivated lands in 2019 and 2020 as a baseline, from where the Normalised Difference Vegetation Index (NDVI) was used to distinguish irrigated from rainfed, focusing on the dry winter period when crops are predominately irrigated. The mapping accuracy of 84.9% improved the efficacy in defining the actual spatial extent of current irrigated areas at both smallholder and commercial spatial scales. The proportion of irrigated areas was high for both commercial (92.5%) and smallholder (96.2%) irrigation. Moreover, smallholder irrigation increased by over 19% between 2019 and 2020, compared to slightly over 7% in the commercial sector. Such information is critical for policy formulation regarding equitable and inclusive water allocation, irrigation expansion, land reform, and food and water security in smallholder farming systems.

Crop loss identification at field parcel scale using satellite remote sensing and machine learning

Identifying crop loss at field parcel scale using satellite images is challenging: first, crop loss is caused by many factors during the growing season; second, reliable reference data about crop loss are lacking; third, there are many ways to define crop loss. This study investigates the feasibility of using satellite images to train machine learning (ML) models to classify agricultural field parcels into those with and without crop loss. The reference data for this study was provided by Finnish Food Authority (FFA) containing crop loss information of approximately 1.4 million field parcels in Finland covering about 3.5 million ha from 2000 to 2015. This reference data was combined with Normalised Difference Vegetation Index (NDVI) derived from Landsat 7 images, in which more than 80% of the possible data are missing. Despite the hard problem with extremely noisy data, among the four ML models we tested, random forest (with mean imputation and missing value indicators) achieved the average AUC (area under the ROC curve) of 0.688±0.059 over all 16 years with the range [0.602, 0.795] in identifying new crop-loss fields based on reference fields of the same year. To our knowledge, this is one of the first large scale benchmark study of using machine learning for crop loss classification at field parcel scale. The classification setting and trained models have numerous potential applications, for example, allowing government agencies or insurance companies to verify crop-loss claims by farmers and realise efficient agricultural monitoring.

Towards the Assessment of Soil-Erosion-Related C-Factor on European Scale Using Google Earth Engine and Sentinel-2 Images

Soil erosion is a constant environmental threat for the entirety of Europe. Numerous studies have been published during the last years concerning assessing soil erosion utilising Remote Sensing (RS) and Geographic Information Systems (GIS). Such studies commonly employ empirical erosion models to estimate soil loss on various spatial scales. In this context, empirical models have been highlighted as major approaches to estimate soil loss on various spatial scales. Most of these models analyse environmental factors representing soil-erosion-influencing conditions such as the climate, topography, soil regime, and surface vegetation coverage. In this study, the Google Earth Engine (GEE) cloud computing platform and Sentinel-2 satellite imagery data have been combined to assess the vegetation-coverage-related factor known as cover management factor (C-factor) at a high spatial resolution (10 m) considering a total of 38 European countries. Based on the employment of the RS derivative of the Normalised Difference Vegetation Index (NDVI) for January and December 2019, a C-factor map was generated due to mean annual estimation. National values were then calculated in terms of different types of agricultural land cover classes. Furthermore, the European C-factor (CEUROPE) values concerning the island of Crete (Greece) were compared with relevant values estimated for the island (CCRETE) based on Sentinel-2 images being individually selected at a monthly time-step of 2019 to generate a series of 12 maps for the C-factor in Crete. Our results yielded identical C-factor values for the different approaches. The outcomes denote GEE’s high analytic and processing abilities to analyse massive quantities of data that can provide efficient digital products for soil-erosion-related studies.

Effect modification of greenness on PM2.5 associated all-cause mortality in a multidrug-resistant tuberculosis cohort

RationaleEvidence for the association between fine particulate matter (PM2.5) and mortality among patients with tuberculosis (TB) is limited. Whether greenness protects air pollution-related mortality among patients with multidrug-resistant tuberculosis (MDR-TB) is completely unknown.Methods2305 patients reported in Zhejiang and Ningxia were followed up from MDR-TB diagnosis until death, loss to follow-up or end of the study (31 December 2019), with an average follow-up of 1724 days per patient. 16-day averages of contemporaneous Normalised Difference Vegetation Index (NDVI) in the 500 m buffer of patient’s residence, annual average PM2.5 and estimated oxidant capacity Ox were assigned to patients regarding their geocoded home addresses. Cox proportional hazards regression models were used to estimate HRs per 10 μg/m3 exposure to PM2.5 and all-cause mortality among the cohort and individuals across the three tertiles, adjusting for potential covariates.ResultsHRs of 1.702 (95% CI 1.680 to 1.725) and 1.169 (1.162 to 1.175) were observed for PM2.5 associated with mortality for the full cohort and individuals with the greatest tertile of NDVI. Exposures to PM2.5 were stronger in association with mortality for younger patients (HR 2.434 (2.432 to 2.435)), female (2.209 (1.874 to 2.845)), patients in rural (1.780 (1.731 to 1.829)) and from Ningxia (1.221 (1.078 to 1.385)). Cumulative exposures increased the HRs of PM2.5-related mortality, while greater greenness flattened the risk with HRs reduced in 0.188–0.194 on average.ConclusionsIndividuals with MDR-TB could benefit from greenness by having attenuated associations between PM2.5 and mortality. Improving greener space and air quality may contribute to lower the risk of mortality from TB/MDR-TB and other diseases.

Spatial analysis of G.f.fuscipes abundance in Uganda using Poisson and Zero-Inflated Poisson regression models

Background Tsetse flies are the major vectors of human trypanosomiasis of the form Trypanosoma brucei rhodesiense and T.b.gambiense. They are widely spread across the sub-Saharan Africa and rendering a lot of challenges to both human and animal health. This stresses effective agricultural production and productivity in Africa. Delimiting the extent and magnitude of tsetse coverage has been a challenge over decades due to limited resources and unsatisfactory technology. In a bid to overcome these limitations, this study attempted to explore modelling skills that can be applied to spatially estimate tsetse abundance in the country using limited tsetse data and a set of remote-sensed environmental variables. Methodology Entomological data for the period 2008–2018 as used in the model were obtained from various sources and systematically assembled using a structured protocol. Data harmonisation for the purposes of responsiveness and matching was carried out. The key tool for tsetse trapping was itemized as pyramidal trap in many instances and biconical trap in others. Based on the spatially explicit assembled data, we ran two regression models; standard Poisson and Zero-Inflated Poisson (ZIP), to explore the associations between tsetse abundance in Uganda and several environmental and climatic covariates. The covariate data were constituted largely by satellite sensor data in form of meteorological and vegetation surrogates in association with elevation and land cover data. We finally used the Zero-Inflated Poisson (ZIP) regression model to predict tsetse abundance due to its superiority over the standard Poisson after model fitting and testing using the Vuong Non-Nested statistic. Results A total of 1,187 tsetse sampling points were identified and considered as representative for the country. The model results indicated the significance and level of responsiveness of each covariate in influencing tsetse abundance across the study area. Woodland vegetation, elevation, temperature, rainfall, and dry season normalised difference vegetation index (NDVI) were important in determining tsetse abundance and spatial distribution at varied scales. The resultant prediction map shows scaled tsetse abundance with estimated fitted numbers ranging from 0 to 59 flies per trap per day (FTD). Tsetse abundance was found to be largest at low elevations, in areas of high vegetative activity, in game parks, forests and shrubs during the dry season. There was very limited responsiveness of selected predictors to tsetse abundance during the wet season, matching the known fact that tsetse disperse most significantly during wet season. Conclusions A methodology was advanced to enable compilation of entomological data for 10 years, which supported the generation of tsetse abundance maps for Uganda through modelling. Our findings indicate the spatial distribution of the G. f. fuscipes as; low 0–5 FTD (48%), medium 5.1–35 FTD (18%) and high 35.1–60 FTD (34%) grounded on seasonality. This approach, amidst entomological data shortages due to limited resources and absence of expertise, can be adopted to enable mapping of the vector to provide better decision support towards designing and implementing targeted tsetse and tsetse-transmitted African trypanosomiasis control strategies.

A New Application of the Disturbance Index for Fire Severity in Coastal Dunes

Fires are a disturbance that can lead to short term dune destabilisation and have been suggested to be an initiation mechanism of a transgressive dune phase when paired with changing climatic conditions. Fire severity is one potential factor that could explain subsequent coastal dune destabilisations, but contemporary evidence of destabilisation following fire is lacking. In addition, the suitability of conventional satellite Earth Observation methods to detect the impacts of fire and the relative fire severity in coastal dune environments is in question. Widely applied satellite-derived burn indices (Normalised Burn Index and Normalised Difference Vegetation Index) have been suggested to underestimate the effects of fire in heterogenous landscapes or areas with sparse vegetation cover. This work assesses burn severity from high resolution aerial and Sentinel 2 satellite imagery following the 2019/2020 Black Summer fires on Kangaroo Island in South Australia, to assess the efficacy of commonly used satellite indices, and validate a new method for assessing fire severity in coastal dune systems. The results presented here show that the widely applied burn indices derived from NBR differentially assess vegetation loss and fire severity when compared in discrete soil groups across a landscape that experienced a very high severity fire. A new application of the Tasselled Cap Transformation (TCT) and Disturbance Index (DI) is presented. The differenced Disturbance Index (dDI) improves the estimation of burn severity, relative vegetation loss, and minimises the effects of differing soil conditions in the highly heterogenous landscape of Kangaroo Island. Results suggest that this new application of TCT is better suited to diverse environments like Mediterranean and semi-arid coastal regions than existing indices and can be used to better assess the effects of fire and potential remobilisation of coastal dune systems.

Research on the Difference Between Recreational Walking and Transport Walking Among the Elderly in Mega Cities With Different Density Zones: The Case of Guangzhou City

Walking is the easiest method of physical activity for older people, and current research has demonstrated that the built environment is differently associated with recreational and transport walking. This study modelled the environmental characteristics of three different building density zones in Guangzhou city at low, medium, and high densities, and examined the differences in walking among older people in the three zones. The International Physical Activity Questionnaire (IPAQ) was used to investigate the recreational and transport walking time of older people aged 65 years and above for the past week, for a total of three density zones (N = 597) and was analysed as a dependent variable. Geographic Information Systems (GIS) was used to identify 300, 500, 800, and 1,000 m buffers and to assess differences between recreational and transport walking in terms of the built environment [e.g., land-use mix, street connectivity, Normalised Difference Vegetation Index (NDVI) data]. The data were processed and validated using the SPSS software to calculate Pearson's correlation models and stepwise regression models between recreation and transit walking and the built environment. The results found that land use mix and NDVI were positively correlated with transport walking in low-density areas and that transport walking was negatively correlated with roadway mediated centrality (BtE) and Point-of-Interest (PoI) density. Moreover, recreational walking in medium density areas was negatively correlated with self-rated health, road intersection density, and PoI density while positively correlated with educational attainment, population density, land use mix, street connectivity, PoIs density, and NDVI. Transport walking was negatively correlated with land-use mix, number of road crossings while positively correlated with commercial PoI density. Street connectivity, road intersection density, DNVI, and recreational walking in high-density areas showed negative correlations. Moreover, the built environment of older people in Guangzhou differed between recreational and transport walking at different densities. The richness of PoIs has different effects on different types of walking.