scholarly journals Using Discrete-Point LiDAR to Classify Tree Species in the Riparian Pacific Northwest, USA

2021 ◽  
Vol 13 (14) ◽  
pp. 2647
Author(s):  
Julia Tatum ◽  
David Wallin

Practical methods for tree species identification are important for both land management and scientific inquiry. LiDAR has been widely used for species mapping due to its ability to characterize 3D structure, but in structurally complex Pacific Northwest forests, additional research is needed. To address this need and to determine the feasibility of species modeling in such forests, we compared six approaches using five algorithms available in R’s lidR package and Trimble’s eCognition software to determine which approach most consistently identified individual trees across a heterogenous riparian landscape. We then classified segments into Douglas fir (Pseudotsuga menziesii), black cottonwood (Populus balsamifera ssp. trichocarpa), and red alder (Alnus rubra). Classification accuracies based on the best-performing segmentation method were 91%, 92%, and 84%, respectively. To our knowledge, this is the first study to investigate tree species modeling from LiDAR in a natural Pacific Northwest forest, and the first to model Pacific Northwest species at the landscape scale. Our results suggest that LiDAR alone may provide enough information on tree species to be useful to land managers in limited applications, even under structurally challenging conditions. With slight changes to the modeling approach, even higher accuracies may be possible.

Plant Disease ◽  
2021 ◽  
Author(s):  
Brandon Alveshere ◽  
Patrick Bennett ◽  
Mee-Sook Kim ◽  
Ned B. Klopfenstein ◽  
Jared M. LeBoldus

Populus trichocarpa Torr. and Gray (black cottonwood) is an economically and ecologically important tree species native to western North America. It serves as a model tree species in biology and genetics due to its relatively small genome size, rapid growth, and early reproductive maturity (Jansson and Douglas 2007). Black cottonwood is susceptible to root rot caused by at least one species of Armillaria (Raabe 1962), a globally distributed genus that exhibits diverse ecological behaviors (Klopfenstein et al. 2017) and infects numerous woody plant species (Raabe 1962). However, several Armillaria spp. have been isolated from Populus spp. in North America (Mallet 1990), and the most recent report of Armillaria on P. trichocarpa used the now ambiguated name A. mellea (Vahl.) Quel. (see Raabe 1962). In April 2016, mycelial fans and rhizomorphs of an unknown Armillaria species (isolate WV-ARR-3) were collected from P. trichocarpa in a riparian hardwood stand ca. 5.5 km east of Springfield, Oregon, USA (44°3'21.133"N, 122°49'39.935"W). The host was dominant in the canopy, large in diameter (ca. 90-cm dbh) relative to neighboring trees, and exhibited minimal crown dieback (ca. < 5%). A mycelial fan was observed destroying living cambium beneath the inner bark, indicating pathogenicity. The isolate was cultured on malt extract medium (3% malt extract, 3% dextrose, 1% peptone, and 1.5 % agar) and identified as A.cepistipes on the basis of somatic pairing tests and translation elongation factor 1α (tef1) sequences (GenBank Accession No. MK172784). DNA extraction, PCR, and tef1 sequencing followed protocols of Elías-Román et al. (2018). From nine replications of somatic incompatibility tests (18 tester isolates representing six North American Armillaria spp.), the isolate showed high intraspecific compatibility (colorless antagonism) with three A. cepistipes tester isolates (78%), but low compatibility with the other Armillaria spp. (0 – 33%) that occur in the region. Isolate WV-ARR-3 yielded tef1 sequences with a 99% identity to A. cepistipes (GenBank Accession Nos. JF313115 and JF313121). A second isolate (WV-ARR-1; GenBank Accession No. MK172783) with a nearly identical sequence was collected from a maturing P. trichocarpa in a riparian stand ca. 8 km northeast of Monroe, Oregon (44°21’47.57”N, 123°13’14.415”W) along the Willamette River, downstream from the McKenzie river tributary where WV-ARR-3 was collected. Armillaria cepistipes has been reported on Alnus rubra (red alder) in Washington, USA (Banik et al. 1996) and on broad-leaved trees in British Columbia, Canada (Allen et al. 1996). It is generally considered to be a weak pathogen on broad-leaved trees in the Pacific Northwest, but it is also associated with pathogenicity on both coniferous and deciduous trees in Europe (e.g., Lygis et al. 2005). However, a recent phylogenetic study suggested that North American A. cepistipes is phylogenetically distinct from Eurasian A. cepistipes (Klopfenstein et al. 2017), butadditional studies are needed to determine the formal taxonomic status of North American A. cepistipes. To our knowledge, A. cepistipes has not been previously confirmed on P. trichocarpa in the U.S.A. or formally reported as a pathogen of any Populus species in North America. Continued studies are needed to determine the distribution, host range, and ecological role of A. cepistipes in riparian forests of the Pacific Northwest, while monitoring its populations under changing climates.


2009 ◽  
Vol 39 (3) ◽  
pp. 519-525 ◽  
Author(s):  
Chang-Yi Xie ◽  
Cheng C. Ying ◽  
Alvin D. Yanchuk ◽  
Diane L. Holowachuk

Genetic differentiation of black cottonwood ( Populus balsamifera subsp. trichocarpa (Torr. & A. Gray ex Hook) Brayshaw) across a “no-cottonwood” belt on the coast of central British Columbia (BC), Canada, was examined using data on 3 year height, severity of infection by Valsa sordida Nitschke and Melampsora occidentalis H. Jacks., and abnormality of leaf flushing. The data were collected in a common-garden test consisting of 180 provenances of 36 drainages ranging from northern BC to Oregon, USA. The results demonstrated an ecotypic mode, north–south regional differentiation. Valsa sordida and M. occidentalis infected 41% and 89%, respectively, of the trees from the northern region, while 66% showed flushing abnormality. In contrast, only 1% and 27% of their southern counterparts were infected by the same diseases, and 1% had abnormal flushing. Trees from the northern region averaged 87% shorter than those from the south. Regional differentiation accounted for the highest amount of variation observed in all traits, with 60% in 3 year height, 34% in V. sordida, 76% in M. occidentalis, and 50% in abnormal leaf flushing. Regression analysis revealed geographic patterns that essentially reflected regional differentiation along the no-cottonwood belt. The species’ distribution biography, ecological characteristics, and life history suggest that restricted gene migration was the main factor responsible for the observed geographic patterns of genetic differentiation.


Scientifica ◽  
2015 ◽  
Vol 2015 ◽  
pp. 1-8 ◽  
Author(s):  
Toma Buba

This study was aimed at finding the impacts of different tree species and individual trees of different sizes on species richness, diversity, and composition of the herbaceous layer. All the three tree species have greatly increased species richness and diversity both within and outside their crown zones compared with the open grassland. Both species richness and diversity were found to be higher under all the three tree species than outside their crowns, which was in turn higher than the open field.Daniella oliverihas the highest species richness and diversity both within and outside its crown zone followed byVitellaria paradoxaand thenParkia biglobosa. The result also revealed that the same tree species with different sizes leads to different herbaceous species richness, diversity, and composition under and around the trees’ crowns.P. biglobosaandV. paradoxatrees with smaller sizes showed higher species richness and diversity under their crowns than the bigger ones. The dissimilarity of species composition differs between the inside and outside crown zones of the individuals of the same tree species and among the different trees species and the open field.


1996 ◽  
Vol 74 (5) ◽  
pp. 686-693 ◽  
Author(s):  
Simon M. Landhäusser ◽  
Ross W. Wein ◽  
Petra Lange

Low soil temperatures and water availability are thought to be major factors determining the distribution of tree species at the arctic tree line. A comparative study examined the response of Betula papyrifera, Populus balsamifera, and Picea mariana seedlings to different soil temperatures and drought regimes in a growth chamber experiment. Morphological and ecophysiological responses (net assimilation rate, stomatal conductance to water vapour, and residual conductance) of these tree line tree species were measured and compared. Mean biomass accumulation of the deciduous species was greater than that of Picea mariana with increasing soil temperatures. Root biomass showed an increase of 30% in the three species between the soil temperatures of 3 and 15 °C. Response of ecophysiological variables to increased soil temperature was greater in B. papyrifera and Populus balsamifera than in Picea mariana. In a second experiment, drought-preconditioned B. papyrifera and Populus balsamifera seedlings were subjected to a 6-day water-withholding treatment. Drought decreased shoot mass and increased the root to shoot ratio equally in B. papyrifera and Populus balsamifera. Drought-preconditioned B. papyrifera and Populus balsamifera seedlings responded differently to the 6-day water-withholding treatment. Betula papyrifera used a water-conserving strategy and maintained low net assimilation rates and low water use after drought preconditioning, whereas in Populus balsamifera greater net assimilation rates were associated with drought preconditioning. These results are consistent with the distribution of these three tree species at the arctic tree line. Keywords: Picea mariana, Populus balsamifera, Betula papyrifera, drought preconditioning, soil temperature, arctic tree line.


2020 ◽  
Author(s):  
Mark A Turner ◽  
William D Gulsby ◽  
Craig A Harper

Abstract Treatment of individual trees in hardwood stands typically is conducted with herbicides that have no soil activity, such as triclopyr. However, triclopyr is not effective on some tree species. Applying a mixture of triclopyr and imazapyr would broaden the spectrum of species controlled, but nontarget mortality may be problematic as imazapyr may affect other trees through soil activity. We applied herbicide via girdle-and-spray as part of a forest stand improvement treatment in four upland hardwood stands in the Upper Coastal Plain of Alabama. We compared effects of using triclopyr alone with a mixture of triclopyr and imazapyr 18 months posttreatment. Only one untreated sweetgum (Liquidambar styraciflua) out of 440 trees was killed in the stands treated with the herbicide mixture (0.5 percent nontarget mortality rate). Nontarget mortality did not differ between treatments. However, the herbicide mixture controlled hickory (Carya spp.) and sourwood (Oxydendrum arboreum) better than triclopyr alone, with 56 percent of hickory treated with triclopyr still alive 18 months later, compared with 0 percent of hickory treated with the mixture. Our results indicate a mixture of triclopyr and imazapyr provides better control than triclopyr alone, and there is minimal risk to nontarget tree species in hardwood stands when used according to label recommendations. Study Implications Forest stand improvement (FSI) is a noncommercial practice typically conducted by cutting and using herbicide to kill undesirable trees. Consideration must be given to herbicide selection, which is based on efficacy on target species while minimizing nontarget mortality of residual trees. We found that a mixture of triclopyr and imazapyr applied via girdle-and-spray was more effective for FSI than triclopyr alone, which failed to control a significant proportion of treated hickory, and resulted in essentially no nontarget mortality in mixed hardwood stands 18 months after application.


Forests ◽  
2020 ◽  
Vol 11 (10) ◽  
pp. 1079
Author(s):  
Mohammad M. Bataineh ◽  
Brian P. Oswald ◽  
Hans M. Williams ◽  
Daniel R. Unger ◽  
I-Kuai Hung

Piñon (Pinus spp. L.)–juniper (Juniperus spp. L.) woodlands’ historical stand structures were recreated to provide reference conditions and document long-term changes in the Sky Islands of the Davis Mountains, Texas. Restoration of these isolated woodlands requires insights into the range of variability in current and historical stand structures, as well as an understanding of the spatiotemporal establishment and recruitment patterns of tree species. With drastic changes in forests and woodlands of the Southwestern United States widely reported, the main objective of this study was to reconstruct woodland tree temporal and spatial establishment patterns. A stratified random sampling approach was used to select two study sites each of 3600 m2 in area. Within each site, all individual trees were mapped, measured, and cored for age determination. Age and tree location data were used to recreate the spatiotemporal patterns of tree species establishment and recruitment. Increments in density of both Mexican piñon (Pinus cembroides var. cembroides Zucc.) and alligator juniper (Juniperus deppeana var. deppeana Steud.) reached 422 trees ha−1 in the 115-year period between 1890 and 2005; a yearly increment of 4 trees ha−1 that did not reflect a rapid rate of change in these piñon–juniper woodlands. Age distributions reflected the multi-cohort nature of these woodlands, and spatial autocorrelation measures were useful in the objective delineation of these cohorts. Temporal and functional niche differentiation of juniper was reflected in the development pattern where alligator juniper served as a pioneer species, exhibited a longer period of substantial recruitment, and had greater recruitment rates than that of Mexican piñon. Recruitment of Mexican piñon and alligator juniper occurred in an episodic fashion, with the majority of recruits being acquired between 1890 and 1949.


2016 ◽  
Vol 44 (4) ◽  
pp. 595-603 ◽  
Author(s):  
Yuanyong Dian ◽  
Yong Pang ◽  
Yanfang Dong ◽  
Zengyuan Li

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