Developing nation’s soil microbial community shifts and diversity loss: leading towards major ecological threat

2021 ◽  
pp. 117-121
Author(s):  
Arun Kumar ◽  
Sanjat Kumar Sahu ◽  
Jayanthi J

Nature does not discriminate and has no boundaries; however only developing nations faces huge food security issues and in such circumstances much of importance has been emphasised on food production technologies but studies and research on concealed factor behind food production i.e biogeochemical drivers were largely overlooked. Injudicious agricultural practices; for instance profound use of agrochemicals in continuous and unmonitored way may had already situate many soil microbial species in verge of extinction consequently creating ecological imbalance. With huge land pressure for crop production and lack of upto date technologies of preciseness, most of the developing nation which includes the whole of Africa, almost all Asian countries and numerous other island states faces the agricultural land degradation issues; one of the major reason for such degradation is missing out of ecological drivers i.e soil microbial diversity. Anthropogenic activities application of fertilisers, land use changes (LUC), land intensification, crop diversification, irrigation management etc accelerates the soil microbial community shifts and microbial diversity loss predominately in developing nations. In this short communication, we address the concerns faced by the developing nations to prevent the soil microbial community shift and diversity loss. Also we propose the each exported commodity may have specific tax included which may be utilised by soil scientist from developing nations for studying the current soil microbial shifts and diversity loss due to agriculture management practices more efficiently.

2021 ◽  
Vol 13 (21) ◽  
pp. 11684
Author(s):  
Li Fan ◽  
Weiping Zhao ◽  
Wendan Feng ◽  
Ping Mo ◽  
Yunlin Zhao ◽  
...  

Soil microorganisms play an important role in regulating a variety of ecological functions. In recent years, the research on ecological restoration after mining has made people more aware of the importance of microbial diversity to ecosystem restoration. The present study investigated the effect of ecological restoration on microbial community structure and its relationship with soil physicochemical properties in the Dabaoshan mining area, China. High throughput sequencing technology was used to analyze and compare the microbial community composition of three types of soil (undamaged area, unrestoration area, and ecological restoration area). The contents of organic carbon, total nitrogen, and total phosphorus were 2.38–12.97 g/kg, 0.39–1.62 g/kg, and 0.99–1.51 g/kg, respectively. In different soil states, undamaged area and ecological restoration area were significantly higher than those in unrestoration area. The results showed that the structure of soil microbial community was significantly correlated with soil physicochemical properties, and formations in the repaired and unrepaired soils were different. Operational Taxonomic Unit (OTU) cluster analysis and diversity index analysis showed that soil microbial community changed at phylum and genus levels. The results showed that at the phylum level, all soil samples contained Firmicutes, Proteobacteria, and actinobacteria. Firmicutes and Proteobacteria of the ecological restoration area (ER1, ER2) were the highest in relative abundance compared with other samples, accounting for more than 45%. Proteobacteria and Acidobacteria were the dominant phylum in the undamaged area (UD), accounting for 32.7% and 22.3%, respectively. It can be seen that soil restoration produced a new dominant population, and Proteobacteria showed an absolute competitive advantage in the mining soil.


2021 ◽  
Author(s):  
Yi Zhang ◽  
Ying-Zhong Xie ◽  
Hong-Bin Ma ◽  
Juan Zhang ◽  
Le Jing ◽  
...  

Abstract Background: The study evaluates how rainfall change and temperature increase affect microbial communities in the desert grassland of Ningxia Autonomous Region, China to explore the soil microbial community and the relationships among the soil microbial community, chemical properties, soil respiration (SR) and plant biomass under the climate change. We established the field experiment with five levels of rainfall by rainout shelters and two levels of temperature by Open-Top Chamber (OTC). Results: The effect of temperature to soil microbial communities is not significant, but with the continuous increase of rainfall, the microbial community gradually increases. Soil microbial diversity negatively correlated with soil CO2 flux. The α-diversity of microbial communities positively correlated with above-living biomass (ALB) and soil temperature (ST), but negatively correlated with root biomass (RB). Conclusions: Both rainfall and temperature’s rising do not promote the soil community α-diversity, but it can promote soil microbial community β-diversity. Soil microbial communities show resistance to rainfall changing. Soil respiration (SR) will limit soil microbial diversity. Soil organic carbon (SOC), soil total nitrogen (STN), and soil total phosphorus (STP) will promote soil microbial abundance and diversity. ALB and ST will promote the soil α-diversity, but the effect of RB to soil microbial is opposite. These findings maybe provide a reliable theoretical basis for formulating a reasonable response strategy in desert steppe ecosystems.


2021 ◽  
Author(s):  
Liuting Zhou ◽  
Jianjuan Li ◽  
Chen Zhang ◽  
Xinlai Guo ◽  
Wei Chu ◽  
...  

Abstract The aim of this study was to explore the soil microbial variability within different forest ecosystems (evergreen broad-leaf forest (EBF), coniferous forest (CF), subalpine dwarf forest (SDF) and alpine meadow (AM) at different altitudes in mid-subtropics of China. The phospholipid fatty acid (PLFA) method was used to analyze the microbial communities in rhizosphere soil under different forest types. The relationships were also analyzed between the microbial diversity and soil nutrients. A total of 27 PLFA biomarkers were detected and the PLFA concentrations decreased in the sequence of bacteria > fungus > actinomycete > protozoa in all forest types. The microbial communities in the soil under all forest types were distinct. The predominant microflora in all soils were 18:1ω9c, 16:1ω7c, cy19:0, a17:0 and 18:0. The indexes of Simpson, Shannon-Wiener and Brillouin of soil microbial community diversity in these four forest types all showed a trend of EBF > CF > SDF > AM. According to principal component analyses (PCA), the variable variances of principal components 1 and 2, which were related to the PLFA biomarkers of soil microorganisms, were 67.67% and 17.91%, respectively. Furthermore, the total PLFAs of different soil microbial groups showed a correlation with soil nutrients and enzyme activities in all forest types. The soil microbial diversity gradually decreased in the order of EBF > CF > SDF > AM in the Daiyun Mountains. Different vegetation types affect soil microbial community composition and diversity by changing the soil physicochemical properties and enzyme activity.


PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e12098
Author(s):  
You Yin ◽  
Qiuli Li ◽  
Haitao Du

Pinus tabulaeformis plantations have been established around northern China to restore degraded land and provide timber or fuelwood. In recent years, widely distributed monoculture P. tabulaeformis forests have been transformed into mixed forests due to various ecological problems. However, the current research on the influence of near-natural transformation of P. tabulaeformis on soil microbial diversity and community composition remains limited. Therefore, we examined the effect of forest conversion from monoculture Pinus tabuliformis (PT) to P. tabuliformis-Armeniaca vulgaris (PTAU), P. tabuliformis - Robinia pseudoacacia (PTRP), P. tabuliformis - Vitex negundo L. var. heterophylla (PTVN) forests on soil microbial community diversity and composition. The results indicated that compared to PT, PTAU, PTVN, and PTRP could enhance the soil pH, TC, TN, AN, and AK in different degrees, the most obvious in PTAU. Near-natural transformation of P. tabuliformis could improve soil bacterial Pielou_e index, and Simpson index, as well as soil fungal Chao1 index. Proteobacteria and Ascomycota were the dominant soil microbial community at the phylum level. What’s more, both soil bacterial and fungal community among PT, PTAU, PTRP and PTVN showed clear different, and PTAU obviously altered the soil microbial community structure. Proteobacteria was the predominant group in PT, while, Gemmatimonadetes enriched in PTVN. Ascomycota was the predominant group in PTAU, while, Basidiomycota was the predominant group in PTRP. Near-natural transformation of P. tabuliformis could change soil microbial community via altering soil characteristics. In brief, our research results revealed the influence of tree composition and soil nutrient availability on soil microbial diversity and composition, and provided management guidance for introduction soil microbial community in forest protection and management.


el–Hayah ◽  
2012 ◽  
Vol 1 (4) ◽  
Author(s):  
Prihastuti Prihastuti

<p>Soils are made up of organic and an organic material. The organic soil component contains all the living creatures in the soil and the dead ones in various stages of decomposition.  Biological activity in soil helps to recycle nutrients, decompose organic matter making nutrient available for plant uptake, stabilize humus, and form soil particles.<br />The extent of the diversity of microbial in soil is seen to be critical to the maintenance of soil health and quality, as a wide range of microbial is involved in important soil functions.  That ecologically managed soils have a greater quantity and diversity of soil microbial. The two main drivers of soil microbial community structure, i.e., plant type and soil type, are thought to exert their function in a complex manner. The fact that in some situations the soil and in others the plant type is the key factor determining soil microbial diversity is related to their complexity of the microbial interactions in soil, including interactions between microbial and soil and microbial and plants. <br />The basic premise of organic soil stewardship is that all plant nutrients are present in the soil by maintaining a biologically active soil environment. The diversity of microbial communities has on ecological function and resilience to disturbances in soil ecosystems. Relationships are often observed between the extent of microbial diversity in soil, soil and plant quality and ecosystem sustainability. Agricultural management can be directed toward maximizing the quality of the soil microbial community in terms of disease suppression, if it is possible to shift soil microbial communities.</p><p>Keywords: structure, microbial, implication, sustainable agriculture<br /><br /></p>


2019 ◽  
Vol 9 (8) ◽  
pp. 1552 ◽  
Author(s):  
Sheng-xiang Yang ◽  
Bin Liao ◽  
Rong-bo Xiao ◽  
Jin-tian Li

Current criteria for successful phytostabilization of metalliferous mine wastelands have paid much attention to soil physico-chemical properties and vegetation characteristics. However, it remains poorly understood as to how the soil microbial community responds to phytostabilization practices. To explore the effects of amendments on the microbial community after assisted phytostabilization of an extremely acidic metalliferous mine soil (pH < 3), a pot experiment was performed in which different amendments and/or combinations including lime, nitrogen-phosphorus-potassium (NPK) compound fertilizer, phosphate fertilizer and river sediment were applied. Our results showed the following: (1) The amendments significantly increased soil microbial activity and biomass C, being 2.6–4.9 and 1.9–4.1 times higher than those in the controls, respectively. (2) The activities of dehydrogenase, cellulase and urease increased by 0.9–7.5, 2.2–6.8 and 6.7–17.9 times while acid phosphatase activity decreased by 58.6%–75.1% after the application of the amendments by comparison with the controls. (3) All the amendments enhanced the nutrient status of the mine soil, with organic matter, total nitrogen and total phosphorus increased by 5.7–7.8, 3.1–6.8 and 1.1–1.9 times, relative to the mine soil. In addition, there were strong positive correlations between soil microbial community parameters and nutrient factors, suggesting that they were likely to be synergistic. From an economic view, the combination of lime (25 t ha−1) and sediment from the Pearl River (30%) was optimal for functional rehabilitation of the microbial community in the extremely acidic metalliferous mine soil studied.


2020 ◽  
Vol 66 (4) ◽  
pp. 263-273
Author(s):  
Julien Saavedra-Lavoie ◽  
Anne de la Porte ◽  
Sarah Piché-Choquette ◽  
Claude Guertin ◽  
Philippe Constant

Trace gas uptake by microorganisms controls the oxidative capacity of the troposphere, but little is known about how this important function is affected by changes in soil microbial diversity. This article bridges that knowledge gap by examining the response of the microbial community-level physiological profiles (CLPPs), carbon dioxide (CO2) production, and molecular hydrogen (H2) and carbon monoxide (CO) oxidation activities to manipulation of microbial diversity in soil microcosms. Microbial diversity was manipulated by mixing nonsterile and sterile soil with and without the addition of antibiotics. Nonsterile soil without antibiotics was used as a reference. Species composition changed significantly in soil microcosms as a result of dilution and antibiotic treatments, but there was no difference in species richness, according to PCR amplicon sequencing of the bacterial 16S rRNA gene. The CLPP was 15% higher in all dilution and antibiotic treatments than in reference microcosms, but the dilution treatment had no effect on CO2 production. Soil microcosms with dilution treatments had 58%–98% less H2 oxidation and 54%–99% lower CO oxidation, relative to reference microcosms, but did not differ among the antibiotic treatments. These results indicate that H2 and CO oxidation activities respond to compositional changes of microbial community in soil.


2007 ◽  
Vol 1 (3) ◽  
pp. 204-214 ◽  
Author(s):  
Jan Dirk van Elsas ◽  
Patrick Hill ◽  
Alica Chroňáková ◽  
Martyna Grekova ◽  
Yana Topalova ◽  
...  

2021 ◽  
Author(s):  
Dandan Xu ◽  
Jinfeng Ling ◽  
Pinggen Xi ◽  
Yani Zeng ◽  
Jianfan Zhang ◽  
...  

Abstract Organic mulching is an important management practice in agricultural production to improve soil quality, control crop pests and diseases and increase the biodiversity of soil microecosystem. However, the information about soil microbial diversity and composition in litchi plantation response to organic mulching and its attribution to litchi downy blight severity was limited. This study aimed to investigate the effect of organic mulching on litchi downy blight, and evaluate the biodiversity and antimicrobial potential of soil microbial community of litchi plantation soils under organic mulching. Our results showed that organic mulching could decrease the disease incidence in the litchi plantation. As a result of high-throughput 16S rRNA and ITS rDNA gene illumine sequencing, higher bacterial and fungal community diversity indexes were found in organic mulching soils, the relative abundance of norank f norank o Vicinamibacterales, norank f Vicinamibacteraceae, norank f Xanthobacteraceae, Unclassified c sordariomycetes, Aspergillus and Thermomyces were significant more than that in control soils. Isolation and analysis of antagonistic microorganism showed that 29 antagonistic bacteria strains and 37 antagonistic fungi strains were unique for mulching soils. Thus, we believe that organic mulching has a positive regulatory effect on the litchi downy blight and the soil microbial communities, and so, is more suitable for litchi plantation.


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