Screening, Identification of a Marine Fungal Strain Producing Chitosanase

2012 ◽  
Vol 581-582 ◽  
pp. 1189-1192
Author(s):  
Guo Ren Zu ◽  
Ming Chen ◽  
Chun Zhi Zhang

For the production of oligosaccharides from chitosan, chitosanase-producing strains were screened from local marine mud by clear zone formed on the chitosanase-detection agar (CDA) plate. More than 20 kinds of strains with clear zones on the CDA plates were obtained, including bacteria, actinomyces, and fungi. Among them a marine fungal strain N-8 was screened and chosen because of its prominent chitosanase activity. On the basis of the morphological characteristics and sequence analysis of 26S rDNA of strain N-8, the marine fungal strain N-8 was identified as the species Aspergillus flavus strain.

2013 ◽  
Vol 781-784 ◽  
pp. 779-782
Author(s):  
Ran Liu ◽  
Zhan Li Zhao ◽  
Chun Zhi Zhang ◽  
Ming Chen ◽  
Guo Ren Zu

Lycopene is gaining more and more attention because of its physiological activities, and it is widely used in food additives, cosmetics and other industries. For lycopene production by microorganism, lycopene-producing strains were screened from oil-immersed soil. A strain of S-1 was successfully screened by analysing the cells extract using thin-layer chromatography (TLC). On the basis of morphological characteristics and sequence analysis of 26S rDNA of strain S-1, the strain S-1 was identified as Rhodotorula mucilaginosa. The lycopene production by Rhodotorula mucilaginosa in fermentation broth reached 7.4 mg/L by 108 h.


2016 ◽  
Vol 78 (6-7) ◽  
Author(s):  
Zaidah Zainal Ariffin ◽  
Mohd Sidek Ahmad ◽  
Rosalia Pepi ◽  
Zainon Mohd Noor

Microbial enzymes have continued to assist diverse reactions as biocatalysts. Soil derived microbes offer a prospective resource for such enzymes. Screening and isolation of proteolytic fungi were carried out from soil sample of a Malaysian virgin forest. Four isolates showed clear zone of protein hydrolysis on skim milk agar representing proteolytic activity. Aspergillus flavus UOA/HCPF 5774 exhibited the highest proteolytic activity with a clear zone diameter of 21 mm followed by Aspergillus niger and Trichoderma harzianum both with a clear zone of 16 mm, and Penicillium simplicissimum strain LP42 with a13 mm clear zone. Crude protease activity of 0.230 – 0.277 Units / ml for each fungus was seen after 24 hours incubation. A decline of protease production was observed after 48 hours incubation except for Aspergillus flavus UOA/HCPF 5774 which showed a drop only after 72 hours incubation. The protease producing fungi were partially identified based on their morphological characteristics, macroscopic and microscopic identification. The identification was confirmed by 18S rRNA Sequence Analysis. The four fungi protease producers were Aspergillus niger, Penicillium simplicissimum strain LP42, Aspergillus flavus UOA/HCPF 5774 and Trichoderma harzianum.


2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Parisa Soltan-Alinejad ◽  
Zahra Ramezani ◽  
Hamideh Edalat ◽  
Zakkyeh Telmadarraiy ◽  
Farrokh Dabiri ◽  
...  

Abstract Objectives Hard ticks (Acari: Ixodidae) are ectoparasites of medical and veterinary importance. They are obligate blood-feeding vectors with the ability to transmit a wide variety of pathogens. Standard morphological keys are normally used for the identification of tick species. However, considering the importance of accurate species identification and the determination of bio-ecological characteristics of species, relying on morphological keys alone can be questionable. In this study, two DNA fragments (ITS2 and COI) were selected for phylogenetic evaluation of Iranian hard tick species belonging to the genera Dermacentor, Hyalomma, and Rhipicephalus. Results 1229 specimens of Dermacentor marginatus, D. niveus, Hyalomma anatolicum, Rhipicephalus bursa, and R. sanguineuss.l constituting 11 populations were collected from three different climatic and zoogeographical zones in Iran. Morphological studies revealed notable differences in important morphological characteristics between different populations of D. marginatus. The results of ITS2 sequence analysis provided additional evidence which supports the conspecificity of D. niveus and D. marginatus. Contrary to this finding, the sequence analysis of COI and phylogeny favored the separation of the two species. Given the greater importance of COI in identifying and discriminating species, a possibility heterospecificity between the two species should be considered.


2015 ◽  
Vol 59 (10) ◽  
pp. 6615-6619 ◽  
Author(s):  
R. A. Paul ◽  
S. M. Rudramurthy ◽  
J. F. Meis ◽  
J. W. Mouton ◽  
A. Chakrabarti

ABSTRACTThis study aimed to explore any mutation in theCYP51gene conferring azole resistance inAspergillus flavus. Two voriconazole-resistant and 45 voriconazole-susceptible isolates were included in the study. Sequence analysis demonstrated a T1025C nucleotide change inCYP51C, resulting in the Y319H amino acid substitution in one resistant isolate. However, the earlier described T788G mutation inCYP51Cconferring voriconazole resistance inA. flavusisolates was present in all isolates, irrespective of their susceptibility status.


2014 ◽  
Vol 40 (2) ◽  
pp. 267-275 ◽  
Author(s):  
Hanna Kwaśna ◽  
Piotr Łakomy ◽  
Andrzej Łabędzki

Examination of isolates of <i>Petriella setifera</i> and <i>Oidiodendron setiferum</i> revealed new diagnostic morphological charactcristics. Chlamydosporcs formed by <i>P. setifera</i>, isolated from twigs of sessile oak (<i>Quercus petraea</i>) showing symptoms of oak decline, are described for the first time. The first pictures of <i>P. setifera</i> anamorphs since the publication of its original description in 1912 are presented. Isolates of <i>O. setiferum</i>, from sessile oak twigs and from a log of Scots pine (<i>Pinus sylvestris</i>), were found to have swollen, hyaline, thin-walled, sterile apices on the non-fertile hairs surrounding the fertile heads of conidiophores. They also had numerous coils formed by thin hyphae in the submerged mycelium in agar culture. The taxonomy of both fungi was confirmed by rDNA sequence analysis.


2004 ◽  
Vol 142 (5) ◽  
pp. 603-611 ◽  
Author(s):  
E. C. SHIN ◽  
Y. K. KIM ◽  
W. J. LIM ◽  
S. Y. HONG ◽  
C. L. AN ◽  
...  

The composition of yeast communities in the rumen of cattle was investigated using comparative DNA sequence analysis of yeast 26S rDNA genes. 26S rDNA libraries were constructed from rumen fluid (FF), rumen solid (FS) and rumen epithelium (FE). A total of 97 clones, containing a partial 26S rDNA sequence of 0·6 kb length, were sequenced and subjected to an on-line similarity search.The 41 FF clones could be divided into five classes. The largest class was affiliated with Pezizomycotina class (85·4% of clones), and the remaining classes were related with the Urediniomycotina (2·4%), Hymenomycetes (4·9%), Ustilaginomycetes (4·9%) and Saccharomycotina (2·4%) classes. The 26 FE clones could be divided into three classes and the Saccharomycetes class (92·4% of clones) was the largest group. The remaining classes were related with either Pezizomycotina (3·8%) or Ustilaginomycetes (3·8%). The 30 FS clones were all affiliated with Saccharomycotina. Saccharomycotina were predominant in rumen epithelium and rumen solid while Pezizomycotina were predominant in rumen fluid. Yeast belonging to the Saccharomycotina class was predominant in the rumen as a whole (57%). One clone (FF34) had less than 90% similarity to any sequence in the database and was thus apparently unrelated to any previously described yeast.


Author(s):  
Eloisa Salvador Mascarini ◽  
Juliana Garlet ◽  
Muriel Da Silva Folli-Pereira

This study aimed to determine the main pathogens present in Senegalia polliphyla (DC.) seeds and to evaluate the fungicidal potential of Metrodorea flavida (K. Krause) extracts. For this purpose, concentrations of 0.5, 1.0, 1.5 and 2.0% of the extract of Metrodorea flavida leaves were used, in an ethanolic or aqueous form. The experiment was carried out using the Blottertest method to assess the incidence of pathogens in seeds and after application of treatments. Thus, the effect of extracts on the incidence of pathogens and the effects of the extracts on the germination and morphological characteristics of the seedlings was analyzed. The main pathogens found in Senegalia polliphyla seeds were Aspergillus flavus and Fusarium oxysporum. The aqueous and ethanolic extracts reduced the infestation of pathogens associated with Senegalia polliphyla seeds, as well as the main fungus found: Aspergillus flavus Link. It was also found that the extracts did not influence the germination and morphological characteristics of Senegalia polliphyla seedlings in all concentrations evaluated, thus being a promising alternative for pathogen control in forest seeds.


Plant Disease ◽  
2008 ◽  
Vol 92 (6) ◽  
pp. 974-974 ◽  
Author(s):  
P. Alvarez-Loayza ◽  
J. F. White ◽  
C. Cadenas Giraldo

Tree species Oxandra acuminata, Pseudomalmea diclina, and Unonopsis matthewsii (Annonaceae) are sources of wood for people of the Amazonian Region where the trees are harvested from natural populations. With increased human population and agriculture in the Amazonian Region, forest diversity is affected. To manage the forest communities, it is necessary to understand the dynamics of regeneration of forest plants. Diseases that affect seed and seedling survival are critical in determining the ultimate species composition. During the dry season in June of 2006, rotten seeds of U. matthewsii (approximately 90% of 380 seeds) were observed in seven natural locations over an area of 150 ha in lowland tropical forest in Manu National Park, Peru. Colonized seeds were open and covered with yellow, dry, powdery, easily liberated conidia. One month later, seeds of O. acuminata in the same locations showed the same symptoms. In August of 2007, P. diclina seeds were naturally dispersed (by animals) in these plots and showed similar symptoms. The disease affecting O. acuminata was found in two other sampling sites along the river at the Los Amigos Research Station located 80 km southeast of Manu National Park. In all cases, the pathogen was identified as Aspergillus flavus based on morphological characteristics (1,2). Isolation of the pathogen was made on potato dextrose agar (PDA) amended with chloramphenicol (100 mg/l) and incubated at 28°C for 5 to 7 days. Single-spore isolations were made from each plant species and maintained as stock cultures. Colonies grown on PDA were granular, flat, and yellow at first, but quickly became bright to dark yellow-green. The radiate conidial heads measured approximately 400 μm in diameter. Older globose vesicles measured from 28 to 45 μm in diameter. Conidia were globose or subglobose with roughened walls and measured 3 to 5.5 μm in diameter. For pathogenicity tests, healthy seeds from the three species obtained from several trees, were previously surface sterilized by dipping in a 0.1% chlorine solution and allowed to dry. To inoculate seeds, a small scalpel was used to make a superficial cut on the seeds, after which a conidial suspension (3 × 105 conidia/ml of distilled water) was pipetted over each wound. For each plant species, 20 seeds were inoculated and 20 were used as control. This procedure was repeated twice. Each seed was maintained in a petri plate at ambient temperature in a field station lab and evaluated daily for 10 days. Inoculated seeds of all three species showed symptoms identical to those seen in field populations. Colonized seeds died after 2 to 7 days, and dry, yellow conidia were produced inside the open seed after approximately 1 to 2 days of decay. A. flavus was reisolated from colonized seeds. Control seeds remained healthy. A. flavus is ubiquitous and has been reported on numerous host plants worldwide (1,2). However, to our knowledge, this is the first report of A. flavus causing high seed mortality of species of Annonaceae in Peru. Our observations suggest that A. flavus is an important fungus affecting survival of seeds of O. acuminata, P. diclina, and U. matthewsii in the natural plant communities where we conducted this study. References: (1) B. W. Horn. Mycologia 97:202, 2005. (2) K. B. Raper and D. I. Fennell. The Genus Aspergillus. Williams and Wilkins, Baltimore, MD, 1965.


Nematology ◽  
2014 ◽  
Vol 16 (2) ◽  
pp. 125-136 ◽  
Author(s):  
Katarzyna Rybarczyk-Mydłowska ◽  
Hanny van Megen ◽  
Sven van den Elsen ◽  
Paul Mooyman ◽  
Gerrit Karssen ◽  
...  

In 2000 Siddiqi formulated a hypothesis stating that root-knot nematodes (Meloidogyne spp.) constitute a branch arising from yet another important group of plant parasites, the migratory Pratylenchidae. This hypothesis was solely based on morphological characteristics. Ribosomal DNA (rDNA) sequence analysis supports this hypothesis in its broad sense, but the more precise question about the identity of a migratory Pratylenchidae representative being closest to the most basal Meloidogyne species could not be addressed due to a lack of backbone resolution (Holterman et al., 2009). Here we present an extended small subunit rDNA sequence analysis and a data set of partial RNA polymerase II sequences from Pratylenchidae and basal Meloidogynidae. Our data point at members of the genus Pratylenchus as being closest to the common ancestor of the root-knot nematodes, but it was not possible unequivocally to identify a candidate lesion nematode species. Pratylenchus is a species-rich genus (ca 70 valid species), and we suggest that the species closest to the most basal root-knot nematode should be sought outside of the group of relatively well-characterised, agronomically relevant, species.


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