scholarly journals Transcription factors as potential participants in the signal transduction pathway of boron deficiency

2013 ◽  
Vol 8 (11) ◽  
pp. e26114 ◽  
Author(s):  
Agustín González-Fontes ◽  
Jesús Rexach ◽  
Carlos Quiles-Pando ◽  
M Begoña Herrera-Rodríguez ◽  
Juan J Camacho-Cristóbal ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Transcription Factors ◽  
Signal Transduction Pathway ◽  
Boron Deficiency ◽  
Transduction Pathway

scholarly journals An Efficient Method to Identify Conditionally Activated Transcription Factors and their Corresponding Signal Transduction Pathway Segments

2009 ◽  
Vol 3 ◽  
pp. BBI.S3485
Author(s):  
Haiyan Hu
Keyword(s):  
Signal Transduction ◽  
Transcription Factors ◽  
Efficient Method ◽  
Molecular Mechanisms ◽  
Target Genes ◽  
Signal Transduction Pathway ◽  
Protein Interaction Data ◽  
Transduction Pathway ◽  
Binding Data ◽  
Microarray Datasets

A signal transduction pathway (STP) is a cascade composed of a series of signal transferring steps, which often activate one or more transcription factors (TFs) to control the transcription of target genes. Understanding signaling pathways is important to our understanding of the molecular mechanisms of disease. Many condition-annotated pathways have been deposited in public databases. However, condition-annotated pathways are far from complete, considering the large number of possible conditions. Computational methods to assist in the identification of conditionally activated pathways are greatly needed. In this paper, we propose an efficient method to identify conditionally activated pathway segments starting from the identification of conditionally activated TFs, by incorporating protein-DNA binding data, gene expression data and protein interaction data. Applying our methods on several microarray datasets, we have discovered many significantly activated TFs and their corresponding pathway segments, which are supported by evidence in the literature.

scholarly journals Fos- and Jun-related transcription factors are involved in the signal transduction pathway of mechanical loading in condylar chondrocytes

2005 ◽  
Vol 28 (1) ◽  
pp. 20-26 ◽  
Author(s):  
Dionisios Papachristou ◽  
Pertti Pirttiniemi ◽  
Tuomo Kantomaa ◽  
Niki Agnantis ◽  
Efthimia K. Basdra
Keyword(s):  
Signal Transduction ◽  
Transcription Factors ◽  
Mechanical Loading ◽  
Signal Transduction Pathway ◽  
Transduction Pathway

Is Ca2+ involved in the signal transduction pathway of boron deficiency? New hypotheses for sensing boron deprivation

Plant Science ◽  
2014 ◽  
Vol 217-218 ◽  
pp. 135-139 ◽  
Author(s):  
Agustín González-Fontes ◽  
M. Teresa Navarro-Gochicoa ◽  
Juan J. Camacho-Cristóbal ◽  
M. Begoña Herrera-Rodríguez ◽  
Carlos Quiles-Pando ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Signal Transduction Pathway ◽  
Boron Deficiency ◽  
Transduction Pathway
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