Pacific Salmon Environmental and Life History Models: Advancing Science for Sustainable Salmon in the Future

2009 ◽  
Keyword(s):  
Life History ◽  
Pacific Northwest ◽  
Habitat Restoration ◽  
Pacific Salmon ◽  
Life Stage ◽  
Time Step ◽  
Web Based ◽  
Restoration Strategies ◽  
Restoration And Protection ◽  
Population Performance

<em>Abstract.</em>—The Ecosystem Diagnosis and Treatment (EDT) model is being used to build working hypotheses to direct habitat restoration and protection activities in most Pacific Northwest salmon watersheds. The EDT model is used to provide a basis for moving forward with restoration and protection activities, evaluating progress, and refining restoration strategies. The model consists of four components: 1) characterization of the aquatic environment, 2) species-habitat rating rules, 3) life history trajectories, and 4) population performance computations. The environmental characterization is a reach-scale, monthly time step, species-neutral depiction of the stream that focuses on environmental features relevant to salmonids. The species-habitat rating rules are explicit assumptions about the relationship between the stream reach characterization and species-life stage survival. Life history trajectories are multiple computer-generated pathways through the environment. Finally, life history and population performance, defined by Beverton–Holt productivity and capacity parameters, is calculated for each life history trajectory and these trajectories are combined across spatial and biological scales to compute population performance. The model is a freely accessible, web-based tool (http://edt.jonesandstokes.com).

Pacific Salmon Environmental and Life History Models: Advancing Science for Sustainable Salmon in the Future

2009 ◽  
Keyword(s):  
Life History ◽  
Iterative Process ◽  
Human Population ◽  
Habitat Restoration ◽  
Oncorhynchus Tshawytscha ◽  
Habitat Degradation ◽  
Pacific Salmon ◽  
Puget Sound ◽  
Habitat Conditions ◽  
Restoration And Protection

<em>Abstract.</em>—The Washington Department of Fish and Wildlife and Tribal co-managers are using the Ecosystem Diagnosis and Treatment (EDT) model to identify the spatial and temporal habitat limits of salmon populations and predict the effects of proposed habitat restoration projects for ESA-listed Chinook salmon <em>Oncorhynchus tshawytscha </em>in two Puget Sound watersheds. The collaborative, iterative process focused on habitat-based population models for the Dungeness and Dosewallips watersheds. Workshops were held to develop quantitative characteristics of current, historic, hypothetical properly functioning, and future habitat conditions. The model predicted salmon populations in the watersheds for each set of habitat conditions. Recovery targets were based on the predicted populations for historic and hypothetical properly functioning conditions. Future populations were modeled using projected habitat conditions with individual habitat restoration and protection actions already proposed and combinations of these actions. Populations resulting from further habitat degradation were estimated using the effects of projected human population growth on habitat.

scholarly journals Can the creation of new freshwater habitat demographically offset losses of Pacific salmon from chronic anthropogenic mortality?

PLoS ONE ◽  
2020 ◽  
Vol 15 (12) ◽  
pp. e0237052
Author(s):  
Pascale Gibeau ◽  
Michael J. Bradford ◽  
Wendy J. Palen
Keyword(s):  
Pacific Northwest ◽  
Coho Salmon ◽  
Pacific Salmon ◽  
Life Stage ◽  
Life Stages ◽  
Typical Size ◽  
Side Channels ◽  
Lower Productivity ◽  
Freshwater Habitats ◽  
The Creation

Over 1 billion USD are devoted annually to rehabilitating freshwater habitats to improve survival for the recovery of endangered salmon populations. Mitigation often requires the creation of new habitat (e.g. habitat offsetting) to compensate population losses from human activities, however offsetting schemes are rarely evaluated. Anadromous Pacific salmon are ecologically, culturally, and economically important in the US and Canada, and face numerous threats from degradation of freshwater habitats. Here we used a matrix population model of coho salmon (Oncorhynchus kisutch) to determine the amount of habitat offsetting needed to compensate mortality (2–20% per year) caused by a range of development activities. We simulated chronic mortality to three different life stages (egg, parr, smolt/adult), individually and simultaneously, to mimic impacts from development, and evaluated if the number of smolts produced from constructed side-channels demographically offset losses. We show that under ideal conditions, the typical size of a constructed side-channel in the Pacific Northwest (PNW) (3405 m2) is sufficient to compensate for only relatively low levels of chronic mortality to either the parr or smolt/adult stages (2–7% per year), but populations do not recover if mortality is >10% per year. When we assumed lower productivity (e.g.; 25th percentile), we found that constructed channels would need to be 2.5–4.5 fold larger as compared to the typical size built in the PNW, respectively, to maintain population sizes. Moreover, when we imposed mortality to parr and smolt/adult stages simultaneously, we found that constructed side-channels would need to be between 1.8- and 2.3- fold larger that if the extra chronic mortality was imposed to one life stage only. We conclude that habitat offsetting has the potential to mitigate chronic mortality to early life stages, but that realistic assumptions about productivity of constructed side-channels and cumulative effects of anthropogenic disturbances on multiple life stages need to be considered.

Hatching and survival of the salmon ‘gill maggot’ Salmincola californiensis (Copepoda: Lernaeopodidae) reveals thermal dependence and undocumented naupliar stage

Parasitology ◽  
2020 ◽  
Vol 147 (12) ◽  
pp. 1338-1343
Author(s):  
Christina A. Murphy ◽  
William Gerth ◽  
Ivan Arismendi
Keyword(s):  
Life History ◽  
Pacific Salmon ◽  
Thermal Sensitivity ◽  
Life Stage ◽  
Infection Prevalence ◽  
Thermal Dependence ◽  
Naupliar Stage ◽  
High Infection ◽  
Native And Introduced Ranges ◽  
High Degree

AbstractSalmincola californiensis is a Lernaeopodid copepod parasitizing Pacific salmon and trout of the genus Oncorhynchus. Salmincola californiensis is of increasing concern in both native and introduced ranges because of its potential fish health impacts and high infection prevalence and intensity in some systems. Discrepancies in the documented life history phenology of S. californiensis with the sister species Salmincola edwardsii, as well as our laboratory observations, led us to question the existing literature. We documented a naupliar stage, thought lost for S. californiensis. In addition, we found a high degree of thermal sensitivity in egg development, with eggs developing faster under warmer conditions. Survival of copepodids was also highly dependent on temperature, with warmer conditions reducing lifespan. The longest lived copepodid survived 18 days at 4°C in stark contrast to the generally accepted <48 h survival for that life stage. We also note a consistent relationship between egg sac size and the number of eggs contained. However, egg sac sizes were highly variable. Our findings demonstrate that revisiting old assumptions for S. californiensis and related taxa will be a necessary step to improving our knowledge of the parasite life history and development that will be critical to disease management.

Managing the decline of Pacific salmon: metapopulation theory and artificial recolonization as ecological mitigation

1999 ◽  
Vol 56 (9) ◽  
pp. 1700-1706 ◽  
Author(s):  
Kyle A Young
Keyword(s):  
Pacific Northwest ◽  
Fisheries Management ◽  
Habitat Restoration ◽  
Pacific Salmon ◽  
Habitat Destruction ◽  
The Pacific ◽  
The Face ◽  
Local Extinctions ◽  
Open Discussion ◽  
Metapopulation Theory

Pacific salmon (Oncorhynchus spp.) in the Pacific Northwest of North America have suffered regional declines and local extinctions primarily because of freshwater habitat destruction and overexploitation by fisheries. Management efforts to reverse this trend have correctly focused on habitat restoration and enhancement and stricter regulation of fisheries. Metapopulation theory and the ecology of the genus suggest that the addition of management efforts that artificially increase the rate of colonization of presently unoccupied habitats may promote the recovery and persistence of Pacific salmon in an ecologically realistic way. Such programs are conceptually and operationally different from traditional stock transfer and enhancement programs, which aimed to maintain a harvestable surplus of salmon in the face of habitat destruction and overfishing. I argue that artificial recolonization programs should be viewed as ecological mitigation, aimed at hastening the return of natural demographic and evolutionary processes, and hope here to promote an open discussion of their merits and risks as such.

scholarly journals Inaccuracies in survey reporting of alcohol consumption

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Conor Gilligan ◽  
Kristen G. Anderson ◽  
Benjamin O. Ladd ◽  
Yun Ming Yong ◽  
Michael David
Keyword(s):  
Public Health ◽  
College Students ◽  
Alcohol Consumption ◽  
Survey Data ◽  
Pacific Northwest ◽  
Accurate Calculation ◽  
Standard Drink ◽  
Web Based ◽  
The Us ◽  
Serving Sizes

Abstract Background Alcohol consumption estimates in public health predominantly rely on self-reported survey data which is likely to underestimate consumption volume. Surveys tend to ask specifically about standard drinks and provide a definition or guide in an effort to gather accurate estimates. This study aimed to investigate whether the inclusion of the term standard drinks with pictorial guide is associated with an adjustment in self-reported alcohol volume. Methods A web-based survey was administered with AUDIT-C questions repeated at the beginning and end of the survey with and without the standard drink term and guide. The order in which respondents were presented with the different question types was randomised. Two cohorts of university/college students in NSW Australia (n = 122) and the US Pacific Northwest (n = 285) completed the survey online. Results Australian students did not adjust their responses to questions with and without the standard drink term and pictorial guide. The US students were more likely to adjust their responses based on the detail of the question asked. Those US students who drank more frequently and in greater volume were less likely to adjust/apply a conversion to their consumption. Conclusions This study supports previous findings of the inaccuracy of alcohol consumption volume in surveys, but also demonstrates that an assumption of underestimation cannot be applied to all individual reports of consumption. Using additional questions to better understand drink types and serving sizes is a potential approach to enable accurate calculation of underestimation in survey data.

Canopy disturbances over the five-century lifetime of an old-growth Douglas-fir stand in the Pacific Northwest

2002 ◽  
Vol 32 (6) ◽  
pp. 1057-1070 ◽  
Author(s):  
Linda E Winter ◽  
Linda B Brubaker ◽  
Jerry F Franklin ◽  
Eric A Miller ◽  
Donald Q DeWitt
Keyword(s):  
Pacific Northwest ◽  
Variable Density ◽  
Tsuga Heterophylla ◽  
Douglas Fir ◽  
Western Hemlock ◽  
Old Growth ◽  
The Pacific ◽  
History Of ◽  
Horizontal Heterogeneity ◽  
Restoration Strategies

The history of canopy disturbances over the lifetime of an old-growth Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) stand in the western Cascade Range of southern Washington was reconstructed using tree-ring records of cross-dated samples from a 3.3-ha mapped plot. The reconstruction detected pulses in which many western hemlock (Tsuga heterophylla (Raf.) Sarg.) synchronously experienced abrupt and sustained increases in ringwidth, i.e., "growth-increases", and focused on medium-sized or larger ([Formula: see text]0.8 ha) events. The results show that the stand experienced at least three canopy disturbances that each thinned, but did not clear, the canopy over areas [Formula: see text]0.8 ha, occurring approximately in the late 1500s, the 1760s, and the 1930s. None of these promoted regeneration of the shade-intolerant Douglas-fir, all of which established 1500–1521. The disturbances may have promoted regeneration of western hemlock, but their strongest effect on tree dynamics was to elicit western hemlock growth-increases. Canopy disturbances are known to create patchiness, or horizontal heterogeneity, an important characteristic of old-growth forests. This reconstructed history provides one model for restoration strategies to create horizontal heterogeneity in young Douglas-fir stands, for example, by suggesting sizes of areas to thin in variable-density thinnings.

scholarly journals Habitat affinity and density-dependent movement as indicators of fish habitat restoration efficacy

2019 ◽  
Author(s):  
Carlos M. Polivka
Keyword(s):  
Behavioral Ecology ◽  
Habitat Restoration ◽  
Pacific Salmon ◽  
Fish Habitat ◽  
Explanatory Power ◽  
Habitat Characteristics ◽  
Density Data ◽  
Trade Offs ◽  
Effectiveness Studies ◽  
Habitat Affinity

AbstractConceptual and methodological tools from behavioral ecology can inform studies of habitat quality and their potential for evaluating habitat restoration in conservation efforts is explored here. Such approaches provide mechanistic detail in understanding the relationship between organisms and their habitats and are thus more informative than correlations between density and habitat characteristics. Several Pacific salmon species have been the target of habitat restoration efforts for the past 2-3 decades, but most post-restoration effectiveness studies have been limited to correlative data described above. In mark-recapture assays from four different study years, the affinity of sub-yearling Chinook salmon (Oncorhynchus tschawytscha) and steelhead (O. mykiss) for stream pools restored with or created by engineered log structures was greater than that for pools without restoration, though with high interannual variability. From corresponding distribution and density data, it was clear that habitat affinity data are not always concordant with single observations of density. The same was true of the correlation between either affinity or density and physical characteristics of pools, although depth and current velocity had some explanatory power for both responses in Chinook. Movement into pools by Chinook during the assays indicated that restored pools can support more immigrants at a given density than can unrestored pools; however no such pattern emerged for steelhead. Variation among individuals in body condition has implications for population-wide fitness, and such low variation was correlated with stronger affinity for pools in Chinook regardless of restoration status. This suggests that pools may mediate habitat-related trade-offs and that restoring them might have a positive effect on fitness. Thus affinity, immigration, and condition data give much-needed mechanistic indication of habitat selection for restored habitat via an apparent capacity increase and those potential fitness benefits. This is stronger support for restoration effectiveness than density differences alone because density data 1) may simply indicate redistribution of fish from poor to good habitats and 2) are not adequate to show correlations between restoration and positive change in traits correlated with fitness.

Detecting persistent change in the habitat of salmon-bearing streams in the Pacific Northwest

2004 ◽  
Vol 61 (2) ◽  
pp. 283-291 ◽  
Author(s):  
David P Larsen ◽  
Philip R Kaufmann ◽  
Thomas M Kincaid ◽  
N Scott Urquhart
Keyword(s):  
Pacific Northwest ◽  
Pacific Salmon ◽  
Monitoring Network ◽  
Habitat Characteristics ◽  
Detection Sensitivity ◽  
Trend Detection ◽  
Spatial And Temporal Variation ◽  
The Pacific ◽  
Two Factors ◽  
Consistent Change

In the northwestern United States, there is considerable interest in the recovery of Pacific salmon (Oncorhynchus spp.) populations listed as threatened or endangered. A critical component of any salmon recovery effort is the improvement of stream habitat that supports various life stages. Two factors in concert control our ability to detect consistent change in habitat conditions that could result from significant expenditures on habitat improvement: the magnitude of spatial and temporal variation and the design of the monitoring network. We summarize the important components of variation that affect trend detection and explain how well-designed networks of 30–50 sites monitored consistently over years can detect underlying changes of 1–2% per year in a variety of key habitat characteristics within 10–20 years, or sooner, if such trends are present. We emphasize the importance of the duration of surveys for trend detection sensitivity because the power to detect trends improves substantially with the passage of years.

scholarly journals Can the creation of new freshwater habitat demographically offset losses of Pacific salmon from chronic anthropogenic mortality?

2020 ◽  
Author(s):  
Pascale Gibeau ◽  
Michael J. Bradford ◽  
Wendy J. Palen
Keyword(s):  
Pacific Northwest ◽  
Coho Salmon ◽  
Pacific Salmon ◽  
Life Stages ◽  
Typical Size ◽  
Side Channels ◽  
Lower Productivity ◽  
Freshwater Habitats ◽  
The Creation ◽  
Habitat Compensation

AbstractOver 1 billion USD are devoted annually to rehabilitating freshwater habitats to improve survival for the recovery of endangered salmon populations. Mitigation often requires the creation of new habitat (e.g. habitat compensation) to offset population losses from human activities, however compensation schemes are rarely evaluated. Anadromous Pacific salmon are ecologically, culturally, and economically important in the US and Canada, and face numerous threats from climate change, over-harvesting, and degradation of freshwater habitats. Here we used a matrix population model of coho salmon (Oncorhynchus kisutch) to determine the amount of habitat compensation needed to offset mortality (2-20% per year) caused by a range of development activities. We simulated chronic mortality to three different life stages (egg, parr, smolt/adult), individually and in combination, to mimic impacts from development, and evaluated if the number of smolts produced from constructed side-channels demographically offset losses. We show that under ideal conditions, the typical size of a constructed side-channel in the Pacific Northwest (PNW) (3405 m2) is sufficient to compensate for only relatively low levels of chronic mortality to either the parr or smolt/adult stages (2-7% per year), but populations do not recover if mortality is >10% per year. When we assumed lower productivity (e.g.; 25th percentile), or imposed mortality at multiple life stages, we found that constructed channels would need to be larger (0.2-4.5 times) than if we assumed mean productivity or as compared to the typical size built in the PNW, respectively, to maintain population sizes.. We conclude that habitat compensation has the potential to mitigate chronic mortality to early life stages, but that current practices are likely not sufficient when we incorporate more realistic assumptions about productivity of constructed side-channels and cumulative effects of anthropogenic disturbances on multiple life stages.

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