scholarly journals A new mechanistic framework to predict OCS fluxes from soils

2016 ◽  
Vol 13 (8) ◽  
pp. 2221-2240 ◽  
Author(s):  
Jérôme Ogée ◽  
Joana Sauze ◽  
Jürgen Kesselmeier ◽  
Bernard Genty ◽  
Heidi Van Diest ◽  
...  
Keyword(s):  
Large Scale ◽  
Soil Microorganisms ◽  
Soil Moisture Content ◽  
Mechanistic Model ◽  
Carbonyl Sulfide ◽  
Reaction Diffusion ◽  
Global Scale ◽  
First Order ◽  
Uptake Rates ◽  
Hydrolysis Of

Abstract. Estimates of photosynthetic and respiratory fluxes at large scales are needed to improve our predictions of the current and future global CO2 cycle. Carbonyl sulfide (OCS) is the most abundant sulfur gas in the atmosphere and has been proposed as a new tracer of photosynthetic gross primary productivity (GPP), as the uptake of OCS from the atmosphere is dominated by the activity of carbonic anhydrase (CA), an enzyme abundant in leaves that also catalyses CO2 hydration during photosynthesis. However soils also exchange OCS with the atmosphere, which complicates the retrieval of GPP from atmospheric budgets. Indeed soils can take up large amounts of OCS from the atmosphere as soil microorganisms also contain CA, and OCS emissions from soils have been reported in agricultural fields or anoxic soils. To date no mechanistic framework exists to describe this exchange of OCS between soils and the atmosphere, but empirical results, once upscaled to the global scale, indicate that OCS consumption by soils dominates OCS emission and its contribution to the atmospheric budget is large, at about one third of the OCS uptake by vegetation, also with a large uncertainty. Here, we propose a new mechanistic model of the exchange of OCS between soils and the atmosphere that builds on our knowledge of soil CA activity from CO2 oxygen isotopes. In this model the OCS soil budget is described by a first-order reaction–diffusion–production equation, assuming that the hydrolysis of OCS by CA is total and irreversible. Using this model we are able to explain the observed presence of an optimum temperature for soil OCS uptake and show how this optimum can shift to cooler temperatures in the presence of soil OCS emission. Our model can also explain the observed optimum with soil moisture content previously described in the literature as a result of diffusional constraints on OCS hydrolysis. These diffusional constraints are also responsible for the response of OCS uptake to soil weight and depth observed previously. In order to simulate the exact OCS uptake rates and patterns observed on several soils collected from a range of biomes, different CA activities had to be invoked in each soil type, coherent with expected physiological levels of CA in soil microbes and with CA activities derived from CO2 isotope exchange measurements, given the differences in affinity of CA for both trace gases. Our model can be used to help upscale laboratory measurements to the plot or the region. Several suggestions are given for future experiments in order to test the model further and allow a better constraint on the large-scale OCS fluxes from both oxic and anoxic soils.

scholarly journals A new mechanistic framework to predict OCS fluxes from soils

2015 ◽  
Vol 12 (18) ◽  
pp. 15687-15736 ◽  
Author(s):  
J. Ogée ◽  
J. Sauze ◽  
J. Kesselmeier ◽  
B. Genty ◽  
H. Van Diest ◽  
...  
Keyword(s):  
Large Scale ◽  
Soil Microorganisms ◽  
Soil Moisture Content ◽  
Mechanistic Model ◽  
Reaction Diffusion ◽  
Global Scale ◽  
First Order ◽  
Uptake Rates ◽  
Carbonyl Sulphide ◽  
Hydrolysis Of

Abstract. Estimates of photosynthetic and respiratory fluxes at large scales is needed to improve our predictions of the current and future global CO2 cycle. Carbonyl sulphide (OCS) is the most abundant sulphur gas in the atmosphere and has been proposed as a new tracer of photosynthesis (GPP), as the uptake of OCS from the atmosphere is dominated by the activity of carbonic anhydrase (CA), an enzyme abundant in leaves that also catalyses CO2 hydration during photosynthesis. But soils also exchange OCS with the atmosphere which complicates the retrieval of GPP from atmospheric budgets. Indeed soils can take up large amounts of OCS from the atmosphere as soil microorganisms also contain CA, and OCS emissions from soils have been reported in agricultural fields or anoxic soils. To date no mechanistic framework exists to describe this exchange of OCS between soils and the atmosphere but empirical results, once upscaled to the global scale, indicate that OCS consumption by soils dominates over production and its contribution to the atmospheric budget is large, at about one third of the OCS uptake by vegetation, with also a large uncertainty. Here, we propose a new mechanistic model of the exchange of OCS between soils and the atmosphere that builds on our knowledge of soil CA activity from CO2 oxygen isotopes. In this model the OCS soil budget is described by a first-order reaction-diffusion-production equation, assuming that the hydrolysis of OCS by CA is total and irreversible. Using this model we are able to explain the observed presence of an optimum temperature for soil OCS uptake and show how this optimum can shift to cooler temperatures in the presence of soil OCS emissions. Our model can also explain the observed optimum with soil moisture content previously described in the literature as a result of diffusional constraints on OCS hydrolysis. These diffusional constraints are also responsible for the response of OCS uptake to soil weight and depth observed previously. In order to simulate the exact OCS uptake rates and patterns observed on several soils collected from a range of biomes, different CA activities had to be evoked in each soil type, coherent with expected physiological levels of CA in soil microbes and with CA activities derived from CO2 isotope exchange measurements, given the differences in affinity of CA for both trace gases. Our model can also be used to help upscale laboratory measurements to the plot or the region. Several suggestions are given for future experiments in order to test the model further and allow a better constraint on the large-scale OCS fluxes from both oxic and anoxic soils.

scholarly journals Evaluation of carbonyl sulfide biosphere exchange in the Simple Biosphere Model (SiB4)

2021 ◽  
Vol 18 (24) ◽  
pp. 6547-6565
Author(s):  
Linda M. J. Kooijmans ◽  
Ara Cho ◽  
Jin Ma ◽  
Aleya Kaushik ◽  
Katherine D. Haynes ◽  
...  
Keyword(s):  
Mole Fraction ◽  
Mechanistic Model ◽  
Carbonyl Sulfide ◽  
Growing Season ◽  
Global Scale ◽  
Terrestrial Plants ◽  
Large Variability ◽  
Accurate Representation ◽  
High Productivity ◽  
Biosphere Model

Abstract. The uptake of carbonyl sulfide (COS) by terrestrial plants is linked to photosynthetic uptake of CO2 as these gases partly share the same uptake pathway. Applying COS as a photosynthesis tracer in models requires an accurate representation of biosphere COS fluxes, but these models have not been extensively evaluated against field observations of COS fluxes. In this paper, the COS flux as simulated by the Simple Biosphere Model, version 4 (SiB4), is updated with the latest mechanistic insights and evaluated with site observations from different biomes: one evergreen needleleaf forest, two deciduous broadleaf forests, three grasslands, and two crop fields spread over Europe and North America. We improved SiB4 in several ways to improve its representation of COS. To account for the effect of atmospheric COS mole fractions on COS biosphere uptake, we replaced the fixed atmospheric COS mole fraction boundary condition originally used in SiB4 with spatially and temporally varying COS mole fraction fields. Seasonal amplitudes of COS mole fractions are ∼50–200 ppt at the investigated sites with a minimum mole fraction in the late growing season. Incorporating seasonal variability into the model reduces COS uptake rates in the late growing season, allowing better agreement with observations. We also replaced the empirical soil COS uptake model in SiB4 with a mechanistic model that represents both uptake and production of COS in soils, which improves the match with observations over agricultural fields and fertilized grassland soils. The improved version of SiB4 was capable of simulating the diurnal and seasonal variation in COS fluxes in the boreal, temperate, and Mediterranean region. Nonetheless, the daytime vegetation COS flux is underestimated on average by 8±27 %, albeit with large variability across sites. On a global scale, our model modifications decreased the modeled COS terrestrial biosphere sink from 922 Gg S yr−1 in the original SiB4 to 753 Gg S yr−1 in the updated version. The largest decrease in fluxes was driven by lower atmospheric COS mole fractions over regions with high productivity, which highlights the importance of accounting for variations in atmospheric COS mole fractions. The change to a different soil model, on the other hand, had a relatively small effect on the global biosphere COS sink. The secondary role of the modeled soil component in the global COS budget supports the use of COS as a global photosynthesis tracer. A more accurate representation of COS uptake in SiB4 should allow for improved application of atmospheric COS as a tracer of local- to global-scale terrestrial photosynthesis.

scholarly journals Evaluation of carbonyl sulfide biosphere exchange in the Simple Biosphere Model (SiB4)

2021 ◽  
Author(s):  
Linda M. J. Kooijmans ◽  
Ara Cho ◽  
Jin Ma ◽  
Aleya Kaushik ◽  
Katherine D. Haynes ◽  
...  
Keyword(s):  
Mole Fraction ◽  
Mechanistic Model ◽  
Carbonyl Sulfide ◽  
Global Scale ◽  
Terrestrial Plants ◽  
Large Variability ◽  
High Productivity ◽  
Crop Fields ◽  
Soil Component ◽  
Biosphere Model

Abstract. The uptake of carbonyl sulfide (COS) by terrestrial plants is linked to photosynthetic uptake of CO2 by a shared diffusion pathway. Applying COS as a photosynthesis tracer in models requires an accurate representation of biosphere COS fluxes, but these models have not been extensively evaluated against field observations of COS fluxes. In this paper, the COS flux as simulated by the Simple Biosphere Model, version 4 (SiB4) is updated with the latest mechanistic insights and evaluated with site observations from different biomes: one evergreen needleleaf forest, two deciduous broadleaf forests, three grasslands, and two crop fields spread over Europe and North America. To account for the effect of atmospheric COS mole fractions on COS biosphere uptake, we replaced the fixed COS mole fraction originally used in SiB4 with spatially and temporally varying COS mole fraction fields. The lower COS mole fractions in the late growing season reduces COS uptake rates in agreement with observations. We also replaced the empirical soil COS uptake model in SiB4 with a mechanistic model that represents both uptake and production of COS in soils, which improves the match with observations over agricultural fields and fertilized grassland soils. SiB4 was capable of simulating the diurnal and seasonal variation of COS fluxes in the boreal, temperate and Mediterranean region. The daytime vegetation COS flux is on average 8 ± 27 % underestimated, albeit with large variability across sites. On a global scale, our model modifications caused a drop in the COS biosphere sink from 922 Gg S yr−1 in the original SiB4 model to 753 Gg S yr−1 in the updated version. The largest drop in fluxes was driven by lower atmospheric COS mole fractions over regions with high productivity, which highlights the importance of accounting for variations in atmospheric COS mole fractions. The change to a different soil model, on the other hand, had a relatively small effect on the global biosphere COS sink. The small role of the modeled soil component in the COS budget supports the use of COS as a global photosynthesis tracer.

Designing Experiments for Model Identification of the Nitrification Process

1991 ◽  
Vol 24 (6) ◽  
pp. 9-16 ◽  
Author(s):  
P. J. Ossenbruggen ◽  
H. Spanjers ◽  
H. Aspegren ◽  
A. Klapwijk
Keyword(s):  
Mechanistic Model ◽  
Nonlinear Differential Equations ◽  
Model Identification ◽  
Reaction Rates ◽  
Variable Coefficients ◽  
Model Specification ◽  
First Order ◽  
Interactive Behavior ◽  
Batch Tests ◽  
Nitrification Process

A series of batch tests were performed to study the competition for oxygen by Nitrosomonas and Nitrobacter in the nitrification of ammonia in activated sludge. Oxygen uptake rate (OUR) and dynamic (compartment) models describing the process are proposed and tested. The OUR model is described by a Monod relationship and the biogradation process by a set of first order nonlinear differential equations with variable coefficients. The results show a mechanistic model and ten reaction rates are sufficient to capture the interactive behavior of the nitrification process. Methods for model specification, calibrating, and testing the model and the design of additional experiments are described.

The effect of polymeric and model imidazolium halides on the rate of hydrolysis of 4-acetoxy-3-nitrobenzoic acid

1985 ◽  
Vol 50 (4) ◽  
pp. 845-853 ◽  
Author(s):  
Miloslav Šorm ◽  
Miloslav Procházka ◽  
Jaroslav Kálal
Keyword(s):  
Catalyst Concentration ◽  
Low Molecular Weight ◽  
Imidazolium Chloride ◽  
First Order ◽  
Nitrobenzoic Acid ◽  
Rate Of Hydrolysis ◽  
Acid Catalyzed ◽  
Hydrolysis Of ◽  
Ethanol In Water ◽  
Direct Attack

The course of hydrolysis of an ester, 4-acetoxy-3-nitrobenzoic acid catalyzed with poly(1-methyl-3-allylimidazolium bromide) (IIa), poly[l-methyl-3-(2-propinyl)imidazolium chloride] (IIb) and poly[l-methyl-3-(2-methacryloyloxyethyl)imidazolium bromide] (IIc) in a 28.5% aqueous ethanol was investigated as a function of pH and compared with low-molecular weight models, viz., l-methyl-3-alkylimidazolium bromides (the alkyl group being methyl, propyl, and hexyl, resp). Polymers IIb, IIc possessed a higher activity at pH above 9, while the models were more active at a lower pH with a maximum at pH 7.67. The catalytic activity at the higher pH is attributed to an attack by the OH- group, while at the lower pH it is assigned to a direct attack of water on the substrate. The rate of hydrolysis of 4-acetoxy-3-nitrobenzoic acid is proportional to the catalyst concentration [IIc] and proceeds as a first-order reaction. The hydrolysis depends on the composition of the solvent and was highest at 28.5% (vol.) of ethanol in water. The hydrolysis of a neutral ester, 4-nitrophenyl acetate, was not accelerated by IIc.

scholarly journals MW irradiation and ionic liquids as green tools in hydrolyses and alcoholyses

2020 ◽  
Vol 10 (1) ◽  
pp. 001-010 ◽  
Author(s):  
Nikoletta Harsági ◽  
Betti Szőllősi ◽  
Nóra Zsuzsa Kiss ◽  
György Keglevich
Keyword(s):  
Ionic Liquids ◽  
Alkaline Hydrolysis ◽  
Alkyl Group ◽  
Phosphinic Acid ◽  
Reaction Times ◽  
Alternative Possibility ◽  
First Order ◽  
Pseudo First Order ◽  
Mw Irradiation ◽  
Hydrolysis Of

Abstract The optimized HCl-catalyzed hydrolysis of alkyl diphenylphosphinates is described. The reaction times and pseudo-first-order rate constants suggested the iPr > Me > Et ∼ Pr ∼ Bu order of reactivity in respect of the alkyl group of the phosphinates. The MW-assisted p-toluenesulfonic acid (PTSA)-catalyzed variation means a better alternative possibility due to the shorter reaction times, and the alkaline hydrolysis is another option. The transesterification of alkyl diphenylphosphinates took place only in the presence of suitable ionic liquids, such as butyl-methylimidazolium hexafluorophosphorate ([bmim][PF6]) and butyl-methylimidazolium tetrafluoroborate ([bmim][BF4]). The application of ethyl-methylimidazolium hydrosulfate ([emim][HSO4]) and butyl-methylimidazolium chloride ([bmim][Cl]) was not too efficient, as the formation of the ester was accompanied by the fission of the O–C bond resulting in the formation of Ph2P(O)OH. This surprising transformation may be utilized in the phosphinate → phosphinic acid conversion.

scholarly journals Examination of Construct Validity and Criterion-Related Validity of the German Motor Test in Egyptian Schoolchildren

2021 ◽  
Vol 18 (16) ◽  
pp. 8341
Author(s):  
Osama Abdelkarim ◽  
Julian Fritsch ◽  
Darko Jekauc ◽  
Klaus Bös
Keyword(s):  
Construct Validity ◽  
Physical Fitness ◽  
Large Scale ◽  
Body Height ◽  
Cross Sectional Study ◽  
Latent Factors ◽  
Cross Sectional ◽  
First Order ◽  
Motor Test ◽  
Health Related

Physical fitness is an indicator for children’s public health status. Therefore, the aim of this study was to examine the construct validity and the criterion-related validity of the German motor test (GMT) in Egyptian schoolchildren. A cross-sectional study was conducted with a total of 931 children aged 6 to 11 years (age: 9.1 ± 1.7 years) with 484 (52%) males and 447 (48%) females in grades one to five in Assiut city. The children’s physical fitness data were collected using GMT. GMT is designed to measure five health-related physical fitness components including speed, strength, coordination, endurance, and flexibility of children aged 6 to 18 years. The anthropometric data were collected based on three indicators: body height, body weight, and BMI. A confirmatory factor analysis was conducted with IBM SPSS AMOS 26.0 using full-information maximum likelihood. The results indicated an adequate fit (χ2 = 112.3, df = 20; p < 0.01; CFI = 0.956; RMSEA = 0.07). The χ2-statistic showed significant results, and the values for CFI and RMSEA showed a good fit. All loadings of the manifest variables on the first-order latent factors as well as loadings of the first-order latent factors on the second-order superordinate factor were significant. The results also showed strong construct validity in the components of conditioning abilities and moderate construct validity in the components of coordinative abilities. GMT proved to be a valid method and could be widely used on large-scale studies for health-related fitness monitoring in the Egyptian population.

scholarly journals Simulations of a bubble wall interacting with an electroweak plasma

2021 ◽  
Vol 2021 (2) ◽  
Author(s):  
Zong-Gang Mou ◽  
Paul M. Saffin ◽  
Anders Tranberg
Keyword(s):  
Large Scale ◽  
Baryon Asymmetry ◽  
Winding Number ◽  
Bubble Wall ◽  
Electroweak Phase Transition ◽  
First Order ◽  
The Standard Model ◽  
Technical Details ◽  
Real Time Simulations ◽  
Chern Simons

Abstract We perform large-scale real-time simulations of a bubble wall sweeping through an out-of-equilibrium plasma. The scenario we have in mind is the electroweak phase transition, which may be first order in extensions of the Standard Model, and produce such bubbles. The process may be responsible for baryogenesis and can generate a background of primordial cosmological gravitational waves. We study thermodynamic features of the plasma near the advancing wall, the generation of Chern-Simons number/Higgs winding number and consider the potential for CP-violation at the wall generating a baryon asymmetry. A number of technical details necessary for a proper numerical implementation are developed.

scholarly journals Remote Sensing Methods for the Biophysical Characterization of Protected Areas Globally: Challenges and Opportunities

2021 ◽  
Vol 10 (6) ◽  
pp. 384
Author(s):  
Javier Martínez-López ◽  
Bastian Bertzky ◽  
Simon Willcock ◽  
Marine Robuchon ◽  
María Almagro ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Protected Areas ◽  
Large Scale ◽  
Anthropogenic Activities ◽  
Global Scale ◽  
Area Network ◽  
Biophysical Characterization ◽  
Challenges And Opportunities ◽  
Scale Characterization

Protected areas (PAs) are a key strategy to reverse global biodiversity declines, but they are under increasing pressure from anthropogenic activities and concomitant effects. Thus, the heterogeneous landscapes within PAs, containing a number of different habitats and ecosystem types, are in various degrees of disturbance. Characterizing habitats and ecosystems within the global protected area network requires large-scale monitoring over long time scales. This study reviews methods for the biophysical characterization of terrestrial PAs at a global scale by means of remote sensing (RS) and provides further recommendations. To this end, we first discuss the importance of taking into account the structural and functional attributes, as well as integrating a broad spectrum of variables, to account for the different ecosystem and habitat types within PAs, considering examples at local and regional scales. We then discuss potential variables, challenges and limitations of existing global environmental stratifications, as well as the biophysical characterization of PAs, and finally offer some recommendations. Computational and interoperability issues are also discussed, as well as the potential of cloud-based platforms linked to earth observations to support large-scale characterization of PAs. Using RS to characterize PAs globally is a crucial approach to help ensure sustainable development, but it requires further work before such studies are able to inform large-scale conservation actions. This study proposes 14 recommendations in order to improve existing initiatives to biophysically characterize PAs at a global scale.

scholarly journals Combined Block Adjustment for Optical Satellite Stereo Imagery Assisted by Spaceborne SAR and Laser Altimetry Data

2021 ◽  
Vol 13 (16) ◽  
pp. 3062
Author(s):  
Guo Zhang ◽  
Boyang Jiang ◽  
Taoyang Wang ◽  
Yuanxin Ye ◽  
Xin Li
Keyword(s):  
Large Scale ◽  
Satellite Image ◽  
Field Measurements ◽  
High Elevation ◽  
Global Scale ◽  
Stereo Image ◽  
Image Process ◽  
Control Points ◽  
Altimetry Data ◽  
Laser Altimetry

To ensure the accuracy of large-scale optical stereo image bundle block adjustment, it is necessary to provide well-distributed ground control points (GCPs) with high accuracy. However, it is difficult to acquire control points through field measurements outside the country. Considering the high planimetric accuracy of spaceborne synthetic aperture radar (SAR) images and the high elevation accuracy of satellite-based laser altimetry data, this paper proposes an adjustment method that combines both as control sources, which can be independent from GCPs. Firstly, the SAR digital orthophoto map (DOM)-based planar control points (PCPs) acquisition is realized by multimodal matching, then the laser altimetry data are filtered to obtain laser altimetry points (LAPs), and finally the optical stereo images’ combined adjustment is conducted. The experimental results of Ziyuan-3 (ZY-3) images prove that this method can achieve an accuracy of 7 m in plane and 3 m in elevation after adjustment without relying on GCPs, which lays the technical foundation for a global-scale satellite image process.

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