The role of prokaryotes and their extracellular polymeric substances on soil aggregation in carbonate containing semiarid grasslands

Author(s):  
Jeroen Zethof ◽  
Antje Bettermann ◽  
Cordula Vogel ◽  
Doreen Babin ◽  
Erik Cammeraat ◽  
...  

<p>Individual plant species form so-called resource islands in the barren semiarid landscape, whereby many soil properties are enhanced including soil structure. Within the soil structure, mostly studied as soil aggregates, microaggregates (<250µm) form fundamental components, reducing potential erosion of finer particles and subsequent loss of nutrients. Extracellular polymeric substances (EPS) are considered an important glue determining aggregation in addition to inorganic binding agents such as carbonates and clay minerals. However, the role of the soil prokaryotic community in EPS formation and consequently for microaggregation in natural environments has not been clarified yet. EPS should be particularly important under semiarid conditions as they form a protection mechanism of the prokaryotes against desiccation. Therefore, we examined the influence of the prokaryotic community on soil EPS content and subsequently on soil aggregation in semiarid grasslands, with respect to the parent material of soil formation, common plant species and the distance to the plant.</p><p>During two sampling campaigns in spring 2017 and 2018, soil samples were taken over a distance gradient from two major semiarid grassland plant species in Southern Spain, the legume shrub <em>Anthyllis cytisoides</em> and the grass tussock <em>Macrochloa tenacissima</em>, to the surrounding bare soil. While topsoil was sampled in five distances to the plant during the first sampling campaign, the second one focused stronger on the root influence, hence rhizoplane and rhizosphere were sampled. Additionally, two sites with different parent materials were chosen to scale the effect of EPS on soil aggregation in the presence of inorganic binding agents (here carbonates). Total community DNA and EPS were extracted, followed by quantification of EPS-saccharides and bacterial abundance, as well as examination of the prokaryotic community composition by Illumina amplicon sequencing of the 16S rRNA genes. Further, the particle size distribution of (micro)aggregates in water was determined, with and without ultrasound treatment, as a measure of soil aggregate size distribution and stability.</p><p>Based on the first sampling campaign, we found that the overall prokaryotic community composition differed between the two sites, but not between plant species. Interdependencies between the community composition and EPS content were revealed, whereby soil organic matter (SOM) seems to be a regulating factor as increasing SOM contents resulted in more EPS-saccharides. Soil microaggregation in the topsoil was enhanced by the plant canopy, especially at the edge of <em>Macrochloa</em> tussocks. Contrary to the expectation that increasing inorganic C contents would diminish the importance of EPS, the parent material richest in inorganic C results in a significant effect of EPS-saccharides on microaggregation.</p><p>First results of the second sampling campaign indicate that even in the rhizoplane and rhizosphere, parent material had a dominating influence on the prokaryotic community composition. As EPS-saccharide contents and soil aggregation followed a similar decreasing trend with distance to the roots and canopy cover, interdependencies are expected.</p><p>From the outcomes until now, we can conclude that the availability of decomposable OM influences the prokaryotic community composition and thereby triggers EPS production, whereas large contents of polyvalent cations from carbonates promote the stabilizing effect of EPS on microaggregates.</p>

Author(s):  
Aditi Sengupta ◽  
Priyanka Kushwaha ◽  
Antonia Jim ◽  
Peter A. Troch ◽  
Raina Maier

The plant-microbe-soil nexus is critical in maintaining biogeochemical balance of the biosphere. However, soil loss and land degradation are occurring at alarmingly high rates, with soil loss exceeding soil formation rates. This necessitates evaluating marginal soils for their capacity to support and sustain plant growth. In a greenhouse study, we evaluated the capacity of marginal incipient basaltic parent material to support native plant growth, and the associated variation in soil microbial community dynamics. Three plant species, native to the Southwestern Arizona-Sonora region were tested with three soil treatments including basaltic parent material, parent material amended with 20% compost, and potting soil. The parent material with and without compost supported germination and growth of all the plant species, though germination was lower than the potting soil. A 16S rRNA amplicon sequencing approach showed Proteobacteria to be the most abundant phyla in both parent material and potting soil, followed by Actinobacteria. Microbial community composition had strong correlations with soil characteristics but not plant attributes within a given soil material. Predictive functional potential capacity of the communities revealed chemoheterotrophy as the most abundant metabolism within the parent material, while photoheterotrophy and anoxygenic photoautotrophy were prevalent in the potting soil. These results show that marginal incipient basaltic soil has the ability to support native plant species growth, and non-linear associations may exist between plant-marginal soil-microbial interactions.


2020 ◽  
Vol 12 (10) ◽  
pp. 4209
Author(s):  
Aditi Sengupta ◽  
Priyanka Kushwaha ◽  
Antonia Jim ◽  
Peter A. Troch ◽  
Raina Maier

The plant–microbe–soil nexus is critical in maintaining biogeochemical balance of the biosphere. However, soil loss and land degradation are occurring at alarmingly high rates, with soil loss exceeding soil formation rates. This necessitates evaluating marginal soils for their capacity to support and sustain plant growth. In a greenhouse study, we evaluated the capacity of marginal incipient basaltic parent material to support native plant growth and the associated variation in soil microbial community dynamics. Three plant species, native to the Southwestern Arizona-Sonora region, were tested with three soil treatments, including basaltic parent material, parent material amended with 20% compost, and potting soil. The parent material with and without compost supported 15%, 40%, and 70% germination of Common Bean (Phaseolus vulgaris L. ‘Tarahumara Norteño’), Mesquite (Prosopis pubescens Benth), and Panic Grass (Panicum Sonorum Beal), respectively, though germination was lower than in the potting soil. Plant growth was also sustained over the 30 day period, with plants in parent material (with and without amendment) reaching 50% height compared to those in the potting soil. A 16S rRNA gene amplicon sequencing approach showed Proteobacteria to be the most abundant phyla in both parent material and potting soil, followed by Actinobacteria. The potting soil showed Gammaproteobacteria (19.6%) to be the second most abundant class, but its abundance was reduced in the soil + plants treatment (5.6%–9.6%). Within the basalt soil type, Alphaproteobacteria (42.7%) and Actinobacteria (16.3%) had a higher abundance in the evaluated bean plant species. Microbial community composition had strong correlations with soil characteristics, but not plant attributes within a given soil material. Predictive functional potential capacity of the communities revealed chemoheterotrophy as the most abundant metabolism within the parent material, while photoheterotrophy and anoxygenic photoautotrophy were prevalent in the potting soil. These results show that marginal incipient basaltic soil, both with and without compost amendments, can support native plant species growth, and non-linear associations may exist between plant–marginal soil–microbial interactions.


2021 ◽  
Vol 30 (2) ◽  
pp. 365-384
Author(s):  
Elena Tello-García ◽  
Nancy Gamboa-Badilla ◽  
Enrique Álvarez ◽  
Laura Fuentes ◽  
Corina Basnou ◽  
...  

2021 ◽  
Author(s):  
Johanna Yletyinen ◽  
George L. W. Perry ◽  
Olivia R. Burge ◽  
Norman W. H. Mason ◽  
Philip Stahlmann‐Brown

2012 ◽  
Vol 279 (1736) ◽  
pp. 2269-2274 ◽  
Author(s):  
Daniel P. Bebber ◽  
Mark A. Carine ◽  
Gerrit Davidse ◽  
David J. Harris ◽  
Elspeth M. Haston ◽  
...  

Discovering biological diversity is a fundamental goal—made urgent by the alarmingly high rate of extinction. We have compiled information from more than 100 000 type specimens to quantify the role of collectors in the discovery of plant diversity. Our results show that more than half of all type specimens were collected by less than 2 per cent of collectors. This highly skewed pattern has persisted through time. We demonstrate that a number of attributes are associated with prolific plant collectors: a long career with increasing productivity and experience in several countries and plant families. These results imply that funding a small number of expert plant collectors in the right geographical locations should be an important element in any effective strategy to find undiscovered plant species and complete the inventory of the world flora.


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