scholarly journals Edge effect on carabid assemblages along forest-grass transects

Web Ecology ◽  
2001 ◽  
Vol 2 (1) ◽  
pp. 7-13 ◽  
Author(s):  
T. Magura ◽  
B. Tóthmérész ◽  
T. Molnár
Keyword(s):  
Edge Effect ◽  
Abiotic Factors ◽  
Canopy Cover ◽  
Distinct Species ◽  
Forest Edge ◽  
Principal Coordinates Analysis ◽  
Forest Interior ◽  
Principal Coordinates ◽  
Significant Edge ◽  
Characteristic Species

Abstract. During 1997 and 1998, we have tested the edge-effect for carabids along oak-hornbeam forest-grass transects using pitfall traps in Hungary. Our hypothesis was that the diversity of carabids will be higher in the forest edge than in the forest interior. We also focused on the characteristic species of the habitats along the transects and the relationships between their distribution and the biotic and abiotic factors. Our results proved that there was a significant edge effect on the studied carabid communities: the Shannon diversity increased significantly along the transects from the forest towards the grass. The diversity of the carabids were significantly higher in the forest edge and in the grass than in the forest interior. The carabids of the forest, the forest edge and the grass are separated from each other by principal coordinates analysis and by indicator species analysis (IndVal), suggesting that each of the three habitats has a distinct species assemblages. There were 5 distinctive groups of carabids: 1) habitat generalists, 2) forest generalists, 3) species of the open area, 4) forest edge species, and 5) forest specialists. It was demonstrated by multiple regression analyses, that the relative air moisture, temperature of the ground, the cover of leaf litter, herbs, shrubs and canopy cover, abundance of the carabids’ preys are the most important factors determining the diversity and spatial pattern of carabids along the studied transects.

scholarly journals Edge effect on weevils and spiders

Web Ecology ◽  
2002 ◽  
Vol 3 (1) ◽  
pp. 43-47 ◽  
Author(s):  
R. Horváth ◽  
T. Magura ◽  
G. Péter ◽  
B. Tóthmérész
Keyword(s):  
Species Richness ◽  
Edge Effect ◽  
Forest Edge ◽  
Trophic Levels ◽  
Oak Forest ◽  
Forest Interior ◽  
Significant Edge ◽  
The Difference ◽  
Sweep Net

Abstract. The edge effect on weevils and spiders was tested along oak forest – meadow transects using sweep-net samples at the Síkfökút Project in Hungary. For spiders the species richness was significantly higher in the forest edge than either in the meadow or the forest interior. For weevils the species richness of the forest edge was higher than that of the meadow, but the difference was not statistically significant whereas the species richness of the forest interior was significantly lower than that of the forest edge and the meadow. The composition of the spider assemblage of the edge was more similar to the forest, while the composition of weevils in the edge was more similar to the meadow. Our results based on two invertebrate groups operating on different trophic levels suggest that there is a significant edge effect for the studied taxa resulting in higher species richness in the edge.

scholarly journals Dynamics and Edge Effect of an Atlantic Forest Fragment in Brazil

2016 ◽  
Vol 23 (3) ◽  
pp. 340-349 ◽  
Author(s):  
Poliana Gabriella Araújo Mendes ◽  
Maria Amanda Menezes Silva ◽  
Tassiane Novacosque Feitosa Guerra ◽  
Ana Carolina Borges Lins-e-Silva ◽  
Airton de Deus Cysneiros Cavalcanti ◽  
...  
Keyword(s):  
Species Richness ◽  
Atlantic Forest ◽  
Edge Effect ◽  
Woody Plants ◽  
Response Times ◽  
Forest Edge ◽  
Northeastern Brazil ◽  
Forest Fragment ◽  
Canopy Tree ◽  
Forest Interior

ABSTRACT The woody plants in an edge area formed approximately 35 years ago in an Atlantic Forest fragment in northeastern Brazil were examined, and three environments defined: edge, intermediate, and interior. Canopy tree densities and basal areas were found to be similar in all three environments, and also similar to previous published studies in the same region; species richness was greatest at the forest edge. The understory showed greater species richness in the forest interior, but greater diversity and equitability in the intermediate environment. Understory environments close to the forest edge demonstrated larger stem diameters than in the forest interior, although at lesser densities and with smaller total basal areas. Our results indicated the existence of distinct patterns in canopy and understory that most likely reflect differences in the response times of these two vegetation layers, with the understory being more sensitive to alterations in environmental structure.

Distribution, biomass and community structure of demersal fishes of the Gulf of Carpentaria, Australia

1994 ◽  
Vol 45 (3) ◽  
pp. 375 ◽  
Author(s):  
SJM Blaber ◽  
DT Brewer ◽  
AN Harris
Keyword(s):  
Community Structure ◽  
Abiotic Factors ◽  
Fish Fauna ◽  
Distribution Patterns ◽  
Demersal Fish ◽  
Fish Distribution ◽  
Sediment Type ◽  
Principal Coordinates Analysis ◽  
Main Site ◽  
Principal Coordinates

The demersal fish fauna of the Gulf of Carpentaria was surveyed during November and December 1990. Over 300 species from 85 families were caught by trawling a systematic grid of 107 stations. The absolute mean biomass was 124.8 kg ha-1 (s.e. =44.1) for day trawls and 53.7 kg ha-1 (s.e. =6.0) for night trawls. The overall mean catch rates were 421.3 kg h-1 (s.e. = 128.5) for day trawls and 198.6 kg h-1 (s.e. =21.5) for night trawls. Biomasses were twice as high in the prawn-trawling grounds of Albatross Bay, the south-eastern gulf and Groote Eylandt as they were elsewhere in the gulf. Twenty-five species made up 75% of the biomass; the dominant families were Haemulidae, Carangidae, Leiognathidae and Nemipteridae. Community-structure and distribution patterns were analysed by numerical classification techniques and principal-coordinates analysis. These indicated six main site groups and 15 fish community groups, based on fish species occurrences and biomasses. There was a relationship between fish distribution patterns and depth of water but not other abiotic factors recorded (sediment type, salinity, temperature and turbidity).

scholarly journals Evaluating the Capability of Unmanned Aerial System (UAS) Imagery to Detect and Measure the Effects of Edge Influence on Forest Canopy Cover in New England

Forests ◽  
2021 ◽  
Vol 12 (9) ◽  
pp. 1252
Author(s):  
Heather Grybas ◽  
Russell G. Congalton
Keyword(s):  
New England ◽  
Forest Canopy ◽  
Canopy Cover ◽  
Point Clouds ◽  
Forest Edge ◽  
P Value ◽  
Unmanned Aerial Systems ◽  
Forest Edges ◽  
Significant Edge ◽  
The Face

Characterizing and measuring the extent of change at forest edges is important for making management decisions, especially in the face of climate change, but is difficult due to the large number of factors that can modify the response. Unmanned aerial systems (UAS) imagery may serve as a tool to detect and measure the forest response at the edge quickly and repeatedly, thus allowing a larger amount of area to be covered with less work. This study is a preliminary attempt to utilize UAS imagery to detect changes in canopy cover, known to exhibit changes due to edge influences, across forest edges in a New England forest. Changes in canopy cover with increasing distance from the forest edge were measured on the ground using digital cover photography and from photogrammetric point clouds and imagery-based maps of canopy gaps produced with UAS imagery. The imagery-based canopy gap products were significantly more similar to ground estimates for canopy cover (p value > 0.05) than the photogrammetric point clouds, but still suffered overestimation (RMSE of 0.088) due to the inability to detect small canopy openings. Both the ground and UAS data were able to detect a decrease in canopy cover to between 45–50 m from the edge, followed by an increase to 100 m. The UAS data had the advantage of a greater sampling intensity and was thus better able to detect a significant edge effect of minimal magnitude effect in the presence of heavy variability.

scholarly journals Genetic Structure and Eco-Geographical Differentiation of Wild Sheep Fescue (Festuca ovina L.) in Xinjiang, Northwest China

2017 ◽  
Author(s):  
Chenglin Zhang ◽  
Jianbo Zhang ◽  
Yan Fan ◽  
Ming Sun ◽  
Wendan Wu ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Gene Flow ◽  
Abiotic Factors ◽  
Northwest China ◽  
Group Method ◽  
Principal Coordinates Analysis ◽  
High Genetic Diversity ◽  
Festuca Ovina ◽  
Principal Coordinates ◽  
Genetic Diversity And Structure

Glaciation and mountain orogeny have generated new ecologic opportunities for plants, favoring an increase in the speciation rate. Moreover, they also act as corridors or barriers for plant lineages and populations. High genetic diversity ensures that species are able to survive and adapt. Gene flow is one of the most important determinants of the genetic diversity and structure of out-crossed species, and it is easily affected by biotic and abiotic factors. The aim of this study was to characterize the genetic diversity and structure of an alpine species, Festuca ovina L., in Xingjiang, China. A total of 100 individuals from 10 populations were analyzed using six amplified fragment length polymorphism (AFLP) primer pairs. A total of 583 clear bands were generated, of which 392 were polymorphic; thus, the percentage of polymorphic bands (PPB) was 67.24%. The total and average genetic diversities were 0.2722 and 0.2006 (0.1686-0.2225), respectively. The unweighted group method with arithmetic mean (UPGMA) tree, principal coordinates analysis (PCoA) and STRUCTURE analyses revealed that these populations or individuals could be clustered into two groups. The analysis of molecular variance analysis (AMOVA) suggested that most of the genetic variance existed within a population, and the genetic differentiation (Fst) among populations was 20.71%. The Shannon differentiation coefficient (G’st) among populations was 0.2350. Limited gene flow (Nm = 0.9571) was detected across all sampling sites. The Fst and Nm presented at different levels under the genetic barriers due to fragmentation. The population genetic diversity was significant relative to environmental factors such as temperature, altitude and precipitation.

scholarly journals Distribution of blue-green algae (Cyanophyta) in streams of Mt. Stara planina: Serbia

2002 ◽  
Vol 54 (3-4) ◽  
pp. 141-148
Author(s):  
Snezana Simic
Keyword(s):  
Green Algae ◽  
Flow Rate ◽  
Current Flow ◽  
Abiotic Factors ◽  
Principal Coordinates Analysis ◽  
Bottom Type ◽  
Blue Green Algae ◽  
Principal Coordinates ◽  
First Time ◽  
Tolypothrix Distorta

Distribution of blue-green algae was studied at 14 sites along five streams in the Stara Planina mountains. Algological samples were taken from the community of benthos and periphyton in the spring (March-May 1991), summer (June-August 1991, August 1996, July 1997), and autumn (September-November 1991, September 1997). Algae of the classes Chamaesiphonophyceae (species of the genus Chamaesiphon) and Hormogoniophyceae (species of the genera Symploca, Phormidium, Oscillatoria, Schizothrix, Nostoc, Rivularia Homoeothrix, Tolypothrix, and Plectonema) were recorded. The species Chamaesiphon cylindricus, Symploca radians, Phormidium coutinhoi, Nostoc coeruleum, Homoeothrix janthina, Plectonema thomasinianum, and Tolypothrix distorta were registered herein first time in Serbia. Occurrence of blue-green algae in highland brooks and rivers of the Stara Planina mountains was monitored in relation to a large number of abiotic factors e.g. altitude above level, stream dimensions (width and depth), substrate bottom type (%), current flow rate, water temperature and pH oxygen concentration, concentrations of nitrates and phosphates, and BOD5, using Principal Coordinates analysis (PCX)).

scholarly journals Genotyping of Two Mediterranean Trout Populations in Central-Southern Italy for Conservation Purposes Using a Rainbow-Trout-Derived SNP Array

Animals ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 1803
Author(s):  
Valentino Palombo ◽  
Elena De Zio ◽  
Giovanna Salvatore ◽  
Stefano Esposito ◽  
Nicolaia Iaffaldano ◽  
...  
Keyword(s):  
Rainbow Trout ◽  
Genetic Structure ◽  
Fishery Management ◽  
Snp Array ◽  
Fine Scale ◽  
Principal Coordinates Analysis ◽  
Data Set ◽  
Management Actions ◽  
Principal Coordinates ◽  
Mediterranean Trout

Mediterranean trout is a freshwater fish of particular interest with economic significance for fishery management, aquaculture and conservation biology. Unfortunately, native trout populations’ abundance is significantly threatened by anthropogenic disturbance. The introduction of commercial hatchery strains for recreation activities has compromised the genetic integrity status of native populations. This work assessed the fine-scale genetic structure of Mediterranean trout in the two main rivers of Molise region (Italy) to support conservation actions. In total, 288 specimens were caught in 28 different sites (14 per basins) and genotyped using the Affymetrix 57 K rainbow-trout-derived SNP array. Population differentiation was analyzed using pairwise weighted FST and overall F-statistic estimated by locus-by-locus analysis of molecular variance. Furthermore, an SNP data set was processed through principal coordinates analysis, discriminant analysis of principal components and admixture Bayesian clustering analysis. Firstly, our results demonstrated that rainbow trout SNP array can be successfully used for Mediterranean trout genotyping. In fact, despite an overwhelming number of loci that resulted as monomorphic in our populations, it must be emphasized that the resulted number of polymorphic loci (i.e., ~900 SNPs) has been sufficient to reveal a fine-scale genetic structure in the investigated populations, which is useful in supporting conservation and management actions. In particular, our findings allowed us to select candidate sites for the collection of adults, needed for the production of genetically pure juvenile trout, and sites to carry out the eradication of alien trout and successive re-introduction of native trout.

scholarly journals Tree Species Diversity and Composition of Miombo Woodlands in South-Central Angola: A Chronosequence of Forest Recovery after Shifting Cultivation

2017 ◽  
Vol 2017 ◽  
pp. 1-13 ◽  
Author(s):  
Francisco M. P. Gonçalves ◽  
Rasmus Revermann ◽  
Amândio L. Gomes ◽  
Marcos P. M. Aidar ◽  
Manfred Finckh ◽  
...  
Keyword(s):  
Shifting Cultivation ◽  
Stand Structure ◽  
Woody Species ◽  
Distinct Group ◽  
Forest Recovery ◽  
Miombo Woodlands ◽  
Principal Coordinates Analysis ◽  
South Central ◽  
Principal Coordinates ◽  
Management Plans

The study was carried out in the Cusseque area of the Municipality of Chitembo in south-central Angola. Our objectives were to assess the floristic diversity, the species composition, and stand structure of Miombo woodlands during regeneration after shifting cultivation. A total of 40 plots of 1000 m2were surveyed and analyzed, corresponding to mature forests/woodlands and three fallow types of different age. The analyses were based on plot inventories of all trees with DBH ≥ 5 cm. A total of 51 woody species, 38 genera, and 19 families were recorded. The dominant family was Fabaceae, with subfamily Caesalpinioideae being very abundant. Shannon Diversity and Evenness were highest in mature forests and young fallows, while the mature forest stands showed the highest species richness. A Principal Coordinates Analysis (PCoA) showed many species shared between the intermediate fallow types, but only few species were shared with young fallows. Mature forests formed a clearly distinct group. This study shows potential pathways of forest recovery in terms of faster regeneration after agricultural abandonment and, thus, the results presented here can be used in future conservation and management plans in order to reduce the pressure on mature forests.

scholarly journals Habitat associations and conservation status of an endemic forest dwarf chameleon (Bradypodion sp.) from South Africa

Oryx ◽  
2006 ◽  
Vol 40 (2) ◽  
pp. 183-188 ◽  
Author(s):  
Walter J. Reisinger ◽  
Devi M. Stuart-Fox ◽  
Barend F.N. Erasmus
Keyword(s):  
South Africa ◽  
Conservation Status ◽  
Canopy Cover ◽  
Iucn Red List ◽  
Habitat Associations ◽  
Suitable Habitat ◽  
Area Of Occupancy ◽  
Forest Interior ◽  
Forest Remnants ◽  
Iucn Red List Criteria

We quantified habitat associations and evaluated the conservation status of a recently identified, undescribed species of dwarf chameleon, Bradypodion sp. nov. Dhlinza, endemic to scarp forest remnants in KwaZulu-Natal Province, South Africa. At the microhabitat scale the Dhlinza dwarf chameleon was found more often in forest gaps and near paths than highly disturbed edges or forest interior. Chameleon presence was not explained by forest physiognomic variables such as vine cover, shrub and tree density, or canopy cover. Presence near gaps may be better explained by the combined effects of the thermal microenvironment and food availability. The species is moderately common where it occurs, with estimated densities of 4.7, 8.7 and 29.7 individuals per ha within forest interior, edges and gaps respectively. At the landscape scale, the chameleon occurs only in three remnant forests: the Dhlinza, Entumeni and Ongoye Forests. The species' extent of occurrence was estimated to be 88 km2 and its area of occupancy 49 km2. Based on the small area of remaining suitable habitat, this species meets the requirements for categorization as Endangered according to IUCN Red List criteria.

scholarly journals Unraveling city-specific signature and identifying sample origin locations for the data from CAMDA MetaSUB challenge

2021 ◽  
Vol 16 (1) ◽  
Author(s):  
Runzhi Zhang ◽  
Alejandro R. Walker ◽  
Susmita Datta
Keyword(s):  
Machine Learning ◽  
Error Rates ◽  
Average Error ◽  
Importance Score ◽  
Learning Methods ◽  
Principal Coordinates Analysis ◽  
Principal Coordinates ◽  
Total Variability ◽  
The Common ◽  
Feature Selecting

Abstract Background Composition of microbial communities can be location-specific, and the different abundance of taxon within location could help us to unravel city-specific signature and predict the sample origin locations accurately. In this study, the whole genome shotgun (WGS) metagenomics data from samples across 16 cities around the world and samples from another 8 cities were provided as the main and mystery datasets respectively as the part of the CAMDA 2019 MetaSUB “Forensic Challenge”. The feature selecting, normalization, three methods of machine learning, PCoA (Principal Coordinates Analysis) and ANCOM (Analysis of composition of microbiomes) were conducted for both the main and mystery datasets. Results Features selecting, combined with the machines learning methods, revealed that the combination of the common features was effective for predicting the origin of the samples. The average error rates of 11.93 and 30.37% of three machine learning methods were obtained for main and mystery datasets respectively. Using the samples from main dataset to predict the labels of samples from mystery dataset, nearly 89.98% of the test samples could be correctly labeled as “mystery” samples. PCoA showed that nearly 60% of the total variability of the data could be explained by the first two PCoA axes. Although many cities overlapped, the separation of some cities was found in PCoA. The results of ANCOM, combined with importance score from the Random Forest, indicated that the common “family”, “order” of the main-dataset and the common “order” of the mystery dataset provided the most efficient information for prediction respectively. Conclusions The results of the classification suggested that the composition of the microbiomes was distinctive across the cities, which could be used to identify the sample origins. This was also supported by the results from ANCOM and importance score from the RF. In addition, the accuracy of the prediction could be improved by more samples and better sequencing depth.

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