scholarly journals Effect of root exudates of various plants on composition of bacteria and fungi communities with special regard to pathogenic soil-borne fungi

2013 ◽  
Vol 54 (1) ◽  
pp. 95-104 ◽  
Author(s):  
Danuta Piętka ◽  
Elżbieta Patkowska
Keyword(s):  
Winter Wheat ◽  
Root Exudates ◽  
Rhizosphere Soil ◽  
Pathogenic Fungi ◽  
Microbiological Analysis ◽  
Soybean Roots ◽  
Bacteria And Fungi ◽  
Positive Effect ◽  
Number Of Bacteria ◽  
Soil Borne Fungi

The purpose of the studies conducted in the years 1996 - 1998 was to determine the composition of bacteria and fungi populations in the rhizosphere of winter wheat, spring wheat, soybean and potato, and in non-rhizosphere soil. Besides, the effect of root exudates of these plants on the formation of pathogenic fungi communities was established. The microbiological analysis showed that the greatest tolal number of bacteria was found in the rhizospheres of potato and soybean, and the lowest number in non-rhizosphere soil. The smallest total number of fungi was found in the rhizosphere of winter wheat, and the largest in the rhizosphere of soybean. Pathogenic fungi dominated in the rhizospheres of soybean and potato, while non-rhizosphere soil was the poorest in these microorganisms. Among the pathogenic fungi, <i>Fusarium oxysporum, F.culmorum</i> and <i>F.solani</i> were most frequently isolated. Soybean roots exudated the greatest amount of aminoacids, and acidic aminoacids, which have a positive effect on the development of phytopathogens, dominated in their content. On the other hand, the best quantitative and qualitative composition of aminoacids was found out in the root exudates of winter wheat, since they conlained big amounts of alkaline and aromatic aminoacids.

scholarly journals Communities of bacteria and fungi occurring in the rhizosphere of winter wheat

2017 ◽  
Vol 38 (SI 2 - 6th Conf EFPP 2002) ◽  
pp. 361-363
Author(s):  
E. Patkowska ◽  
D. Pięta ◽  
A. Pastucha
Keyword(s):  
Species Composition ◽  
Winter Wheat ◽  
Pathogenic Fungi ◽  
Microbiological Analysis ◽  
Qualitative Composition ◽  
Fusarium Spp ◽  
Wheat Rhizosphere ◽  
Bacillus Spp ◽  
Bacteria And Fungi ◽  
Total Bacteria

The purpose of the present studies was to establish the species composition of fungi occurring on the underground parts of winter wheat, Kobra cv. and to determine the quantitative and qualitative composition of microorganisms developing in the rhizosphere of this plant. The mycological analysis of the infected roots and the stem base of winter wheat gave 320 fungi isolates. Fusarium spp. were most frequently isolated, and their proportion was 64.7% of all the fungi. This genus was represented by F. avenaceum, F. culmorum, F. equiseti, F. graminearum, F. oxysporum and F. solani. Among these species the dominating ones were F. avenaceum (19.4%) and F. culmorum (38.7%). The microbiological analysis of winter wheat rhizosphere gave the highest number of total bacteria (6.32 × 106 cfu/g of d.w. of soil). The number of Pseudomonas pp. was 3.56 × 106 cfu/g of d.w. of soil, and the number of Bacillus spp. was 2.42 × 106 cfu/g of d.w. of soil. Fusarium spp. and Rhizoctonia solani dominated within pathogenic fungi isolated from the rhizosphere of winter wheat.

scholarly journals SOIL-BORNE MICROORGANISMS THREATENING CARROT CULTIVATED WITH THE USE OF COVER CROPS

2020 ◽  
Vol 19 (4) ◽  
pp. 71-86 ◽  
Author(s):  
Elżbieta Patkowska
Keyword(s):  
Cover Crops ◽  
Soil Microorganisms ◽  
Pathogenic Fungi ◽  
Trichoderma Spp ◽  
Saprotrophic Fungi ◽  
Daucus Carota L ◽  
Alternaria Dauci ◽  
Bacillus Spp ◽  
Positive Effect ◽  
Soil Borne Fungi

Cover crops are used in the cultivation of various plants. They properly modify the composition of soil microorganisms and can protect of plants from phytopathogens. The purpose of the field and laboratory studies was to determine the quantitative and qualitative composition of microorganisms in the soil under carrot cultivated with the use of oats, tansy phacelia and spring vetch as cover crops. The paper presents also studies on soil-borne fungi threatening the healthiness of carrot roots. In the conventional cultivation of carrot the population of bacteria (including Pseudomonas spp. and Bacillus spp.) was the smallest, while after the application of oats it was the largest. Oats and spring vetch were most effective in limiting the occurrence of soil-borne fungi. Those plants and tansy phacelia caused an increase of the population of saprotrophic fungi (Albifimbria spp., Clonostachys spp. and Trichoderma spp.) in the soil. Intercrop plants had a positive effect on the healthiness of carrot seedlings and roots. Alternaria dauci, A. alternata, A. radicina, Fusarium oxysporum, Globisporangium irregulare, Neocosmospora solani, Phytophthora sp., Rhizoctonia solani and Sclerotinia sclerotiorum proved to be the most harmful towards the studied underground parts of carrot. Oats proved to be the most effective in inhibiting the occurrence of the pathogenic fungi for Daucus carota L.

scholarly journals The formation of microorganism communities in the soil under the effect of chitosan and runner bean (Phaseolus coccineus L.) cultivation

2013 ◽  
Vol 54 (2) ◽  
pp. 105-115 ◽  
Author(s):  
Danuta Pięta ◽  
Alina Pastucha ◽  
Henryk Struszczyk ◽  
Wiesław Wójcik
Keyword(s):  
Pathogenic Fungus ◽  
Pathogenic Fungi ◽  
Microbiological Analysis ◽  
Liquid Form ◽  
Runner Bean ◽  
Antagonistic Microorganisms ◽  
Number Of Microorganisms ◽  
The Subject ◽  
Bacteria And Fungi ◽  
The University

The subject of the studies was the soil with introduced solutions containing 0,1% chitosan. These materials were obtained from the Institute of Chemical Fibres in L6d2 (in the form of a microcrystalline gel) and also from the Department of Food Biochemistry and Chemistry of the University of Agriculture in Lublin (in a liquid form,i.e.dissolved in acetic acid). In order to set an experiment in a growth chamber, grey brown podzolic soil formed from loesses and taken from a mechanically treated belt of black fallow was used. The soil (1000 g) was watered every 8 days with 100 ml of examined chitosan solutions per pot. Control soil was watered with sterile distilled water. Seven days after each watering, soil samples were taken for microbiological analysis. Then 25 runner bean seeds were sown into each pot. After six weeks of plants' growth the experiment was finished and the number of plants was counted, their healthiness determined and soil microbiological analysis was performed. Regardless of chitosan form introduced to the soil it stimulated the growth of bacteria and fungi, since in these experimental combinations was found a significantly higher number of microorganisms as compared with the control. A particular high increase in the number of microorganism colonies was observed with simultaneous growth of plants and the application of chitosan. A considerable increase of fungi colonies from the <i>Trichoderma</i> genus was found in the soil treated with chitosan in the form ofboth a microcrystalline gel and a liquid. The species of this genus are considered to be antagonists; it affects pathogenic fungi through competition, antibiosis and over-parasitism. An increase in colonies of saprophytic microorganisms, including antagonistic ones of <i>Bacillus</i> spp. and Pseudomonas spp. was observed in the soil treated with chitosan . On the other hand, in the soil after the growth of bean and treated watered with chitosan only few colonies of <i>Fusarium oxysporum</i> f.sp. <i>phaseoli</i>- bean pathogen were found. The healthiness of plants grown in soil treated with chitosan was significantly better as compared to the control. The populations of antagonistic microorganisms formed in the soil in these treatments probably limited the growth of pathogenic fungus.

The state of soil microbiotes during sunflower growing with an herbicide of imidazolinone group

Helia ◽  
2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Natalia Kostyuchenko ◽  
Viktor Lyakh ◽  
Anatoliy Soroka
Keyword(s):  
Species Diversity ◽  
Rhizosphere Soil ◽  
Root Zone ◽  
General Trend ◽  
The State ◽  
Trophic Groups ◽  
Herbicide Application ◽  
Fold Reduction ◽  
Specific Species ◽  
Number Of Bacteria

Abstract The effects of various concentrations of herbicide Euro-Lightning Plus on the state of microbiota in the root zone of sunflower have been studied. Soil of plant rhizosphere and interrow soil after treatment with the herbicide at the doses of 1.2 and 2.5 l/ha were taken for the analysis at the end of sunflower growing season. Rhizosphere soil without herbicide application was used as a control. The herbicide was applied at the stage of 2–4 true leaves. The total number of bacteria in the rhizosphere of control plants was 12.82 million CFU/g of soil while in the rhizosphere and in the interrow soil after herbicide treatment with a dose of 2.5 l/ha it decreased by 1.4–1.5 times. A general trend of decline in number of the basic ecological and trophic groups of bacterial microorganisms with the increase in a dose of herbicide was established. Microbiological coefficients that reflect the functional activity of the microflora indicate changes in its biological activity under the influence of the herbicide Euro-Lightning Plus, which leads to deterioration in the agroecological state of the studied soils. It was also found that herbicide application resulted in a rearrangement of micromycete complexes in the root zone of sunflower which led to a two-fold reduction, compared to the control, of mycobiota species diversity and the formation of a specific species composition of mycocenoses. A greater genus and species diversity of fungi of the microflora in the rhizosphere of control plants, in comparison with the herbicide-treated soil, was revealed. A reduction in species diversity of the genus Penicillium from six species in the control to 1–2 species in the rhizosphere of experimental sunflower plants as well as the absence of rare saprophytic fungi species from the genera Acremonium, Verticillium, Trichoderma and Paecilomyces were noted.

scholarly journals Size and Shape-Dependent Antimicrobial Activities of Silver and Gold Nanoparticles: A Model Study as Potential Fungicides

Molecules ◽  
2020 ◽  
Vol 25 (11) ◽  
pp. 2682 ◽  
Author(s):  
Francis J. Osonga ◽  
Ali Akgul ◽  
Idris Yazgan ◽  
Ayfer Akgul ◽  
Gaddi B. Eshun ◽  
...  
Keyword(s):  
Gold Nanoparticles ◽  
Pathogenic Fungi ◽  
Antimicrobial Activities ◽  
Plant Diseases ◽  
Production Plant ◽  
Silver And Gold Nanoparticles ◽  
Size And Shape ◽  
Model Study ◽  
Pathogenic Microbes ◽  
Bacteria And Fungi

Plant-based pathogenic microbes hinder the yield and quality of food production. Plant diseases have caused an increase in food costs due to crop destruction. There is a need to develop novel methods that can target and mitigate pathogenic microbes. This study focuses on investigating the effects of luteolin tetraphosphate derived silver nanoparticles (LTP-AgNPs) and gold nanoparticles (LTP-AuNPs) as a therapeutic agent on the growth and expression of plant-based bacteria and fungi. In this study, the silver and gold nanoparticles were synthesized at room temperature using luteolin tetraphosphate (LTP) as the reducing and capping agents. The synthesis of LTP-AgNPs and LTP-AuNP was characterized by Transmission Electron Microscopy (TEM) and size distribution. The TEM images of both LTP-AgNPs and LTP-AuNPs showed different sizes and shapes (spherical, quasi-spherical, and cuboidal). The antimicrobial test was conducted using fungi: Aspergillus nidulans, Trichaptum biforme, Penicillium italicum, Fusarium oxysporum, and Colletotrichum gloeosporioides, while the class of bacteria employed include Pseudomonas aeruginosa, Aeromonas hydrophila, Escherichia coli, and Citrobacter freundii as Gram (−) bacteria, and Listeria monocytogenes and Staphylococcus epidermidis as Gram (+) bacterium. The antifungal study demonstrated the selective size and shape-dependent capabilities in which smaller sized spherical (9 nm) and quasi-spherical (21 nm) AgNPs exhibited 100% inhibition of the tested fungi and bacteria. The LTP-AgNPs exhibited a higher antimicrobial activity than LTP-AuNPs. We have demonstrated that smaller sized AgNPs showed excellent inhibition of A. nidulans growth compared to the larger size nanoparticles. These results suggest that LTP-AuNP and LTP-AgNPs could be used to address the detection and remediation of pathogenic fungi, respectively.

scholarly journals Identifying the Active Microbiome Associated with Roots and Rhizosphere Soil of Oilseed Rape

2017 ◽  
Vol 83 (22) ◽  
Author(s):  
Konstantia Gkarmiri ◽  
Shahid Mahmood ◽  
Alf Ekblad ◽  
Sadhna Alström ◽  
Nils Högberg ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Stable Isotope ◽  
Oilseed Rape ◽  
High Throughput ◽  
High Throughput Sequencing ◽  
Rhizosphere Soil ◽  
Stable Isotope Probing ◽  
Biofuel Production ◽  
Content Type ◽  
Bacteria And Fungi

ABSTRACT RNA stable isotope probing and high-throughput sequencing were used to characterize the active microbiomes of bacteria and fungi colonizing the roots and rhizosphere soil of oilseed rape to identify taxa assimilating plant-derived carbon following 13CO2 labeling. Root- and rhizosphere soil-associated communities of both bacteria and fungi differed from each other, and there were highly significant differences between their DNA- and RNA-based community profiles. Verrucomicrobia, Proteobacteria, Planctomycetes, Acidobacteria, Gemmatimonadetes, Actinobacteria, and Chloroflexi were the most active bacterial phyla in the rhizosphere soil. Bacteroidetes were more active in roots. The most abundant bacterial genera were well represented in both the 13C- and 12C-RNA fractions, while the fungal taxa were more differentiated. Streptomyces, Rhizobium, and Flavobacterium were dominant in roots, whereas Rhodoplanes and Sphingomonas (Kaistobacter) were dominant in rhizosphere soil. “Candidatus Nitrososphaera” was enriched in 13C in rhizosphere soil. Olpidium and Dendryphion were abundant in the 12C-RNA fraction of roots; Clonostachys was abundant in both roots and rhizosphere soil and heavily 13C enriched. Cryptococcus was dominant in rhizosphere soil and less abundant, but was 13C enriched in roots. The patterns of colonization and C acquisition revealed in this study assist in identifying microbial taxa that may be superior competitors for plant-derived carbon in the rhizosphere of Brassica napus. IMPORTANCE This microbiome study characterizes the active bacteria and fungi colonizing the roots and rhizosphere soil of Brassica napus using high-throughput sequencing and RNA-stable isotope probing. It identifies taxa assimilating plant-derived carbon following 13CO2 labeling and compares these with other less active groups not incorporating a plant assimilate. Brassica napus is an economically and globally important oilseed crop, cultivated for edible oil, biofuel production, and phytoextraction of heavy metals; however, it is susceptible to several diseases. The identification of the fungal and bacterial species successfully competing for plant-derived carbon, enabling them to colonize the roots and rhizosphere soil of this plant, should enable the identification of microorganisms that can be evaluated in more detailed functional studies and ultimately be used to improve plant health and productivity in sustainable agriculture.

scholarly journals Microbiology Factor Measurement as Indoor Air Quality Parameter in Public Space

BIOEDUKASI ◽  
2019 ◽  
Vol 17 (2) ◽  
pp. 75
Author(s):  
Oktofa Setia Pamungkas ◽  
Henny Ayu Nirwala ◽  
Dina Mala Pardede
Keyword(s):  
Public Space ◽  
Quality Parameter ◽  
The Public ◽  
East Kalimantan ◽  
Number Of Microorganisms ◽  
Private And Public ◽  
Factor Measurement ◽  
Bacteria And Fungi ◽  
Indoor Spaces ◽  
Number Of Bacteria

Nearly 90% of people spend their time in both private and public indoor spaces. Bank is one of the public indoor spaces accessible to the community, as well as a place for some workers spending time every day. This study was conducted in 6 banking sectors in Samarinda, East Kalimantan, focusing on the existence of microorganisms such as bacteria and fungi/mold. The purpose was to investigate the number of microorganisms, both bacteria and fungi, contained in indoor areas of several bank offices in Samarinda. The results showed that the number of bacteria and fungi at several sampling points in 6 offices were above the standard of Permenaker RI No. 5 the year of 2018 and Permenkes RI No. 48 the year of 2016, i.e.,>700 cfu/m3 for bacteria and >1000 cfu/m3 for fungi.

scholarly journals Continuous monocropping highly affect the composition and diversity of microbial communities in peanut (Arachis hypogaea L.)

2021 ◽  
Vol 49 (4) ◽  
pp. 12532
Author(s):  
Ali I. MALLANO ◽  
Xianli ZHAO ◽  
Yanling SUN ◽  
Guangpin JIANG ◽  
Huang CHAO
Keyword(s):  
Microbial Communities ◽  
Management Practices ◽  
Rhizosphere Soil ◽  
Diversity Index ◽  
Cropping Systems ◽  
Soil Microbial Communities ◽  
Pathogenic Fungi ◽  
Continuous Cropping ◽  
Bacterial Phyla ◽  
Soil Microbial

Continuous cropping systems are the leading cause of decreased soil biological environments in terms of unstable microbial population and diversity index. Nonetheless, their responses to consecutive peanut monocropping cycles have not been thoroughly investigated. In this study, the structure and abundance of microbial communities were characterized using pyrosequencing-based approach in peanut monocropping cycles for three consecutive years. The results showed that continuous peanut cultivation led to a substantial decrease in soil microbial abundance and diversity from initial cropping cycle (T1) to later cropping cycle (T3). Peanut rhizosphere soil had Actinobacteria, Protobacteria, and Gemmatimonadetes as the major bacterial phyla. Ascomycota, Basidiomycota were the major fungal phylum, while Crenarchaeota and Euryarchaeota were the most dominant phyla of archaea. Several bacterial, fungal and archaeal taxa were significantly changed in abundance under continuous peanut cultivation. Bacterial orders, Actinomycetales, Rhodospirillales and Sphingomonadales showed decreasing trends from T1>T2>T3. While, pathogenic fungi Phoma was increased and beneficial fungal taxa Glomeraceae decreased under continuous monocropping. Moreover, Archaeal order Nitrososphaerales observed less abundant in first two cycles (T1&T2), however, it increased in third cycle (T3), whereas, Thermoplasmata exhibit decreased trends throughout consecutive monocropping. Taken together, we have shown the taxonomic profiles of peanut rhizosphere communities that were affected by continuous peanut monocropping. The results obtained from this study pave ways towards a better understanding of the peanut rhizosphere soil microbial communities in response to continuous cropping cycles, which could be used as bioindicator to monitor soil quality, plant health and land management practices.

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