scholarly journals Identification of the Polish strains of Chalara ovoidea using RAPD molecular markers

2011 ◽  
Vol 74 (1) ◽  
pp. 35-42 ◽  
Author(s):  
Tadeusz Kowalski ◽  
Wojciech Kraj
Keyword(s):  
Genetic Variability ◽  
Genomic Dna ◽  
Rapd Markers ◽  
Similarity Coefficient ◽  
Genetic Affinity ◽  
The Matrix ◽  
Different Strains ◽  
Mantel’S Test ◽  
Reference Strains ◽  
Positive Results

On the basis of morphological features and RAPD markers the strains of <em>Chalara ovoidea</em> found in Poland on planks and on stems of beech trees were identified. As reference strains the cultures taken from CBS Utrecht were employed; they were cultures CBS 354.76 and CBS 136.88. The amplification of genomic DNA was conducted using 10 primers (OPA01-OPA10), 7 of which (OPA01-OPA05, OPA09, OPA10) gave positive results. In total 42 fragment of DNA (bands) were obtained. In case of primers OPA03, OPA04, OPA05, and OPA09 all obtained fragments for analyzed strains were fully monomorphic. This means, that no genetic variability was found using the above mentioned primers. Low genetic variability was ascertained in the analysis of frequency of occurrence of DNA fragments using other primers, namely OPA01, OPA02, and OPA10. The matrix and dendrogram of genetic affinities among different strains of <em>Chalara</em>, calculated using the Jaccard’s similarity coefficient suggested, that the most similar strains are the ones coming from Poland (HMIPC 16136 and HMIPC16664) as well as the strain CBS 136.88, while somewhat different from them is the strain CBS 354.76. To determine, how exactly did the dendrogram reflect genetic affinity among analyzed strains, the Mantel’s test was employed. The correlation coefficient amounted to 0.78, suggesting that the strains under study had been grouped properly. The results showed, that the fungal strains found in southern Poland represent the species Chalara ovoidea.

scholarly journals Genetic diversity among forty coffee varieties assessed by RAPD markers associated with restriction digestion

2005 ◽  
Vol 48 (4) ◽  
pp. 511-521 ◽  
Author(s):  
Leandro Eugênio Cardamoni Diniz ◽  
Claudete de Fátima Ruas ◽  
Valdemar de Paula Carvalho ◽  
Fabrício Medeiros Torres ◽  
Eduardo Augusto Ruas ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Genetic Variability ◽  
Clustering Analysis ◽  
Genomic Dna ◽  
Rapd Markers ◽  
Random Amplified Polymorphic Dna ◽  
Pcr Amplification ◽  
Restriction Digestion ◽  
Agronomic Features

The genetic variability of 40 accessions of_C. arabica was evaluated using a combination of the random amplified polymorphic DNA (RAPD) technique and restriction digestion of genomic DNA. The genetic variability and the relatedness among all accessions were initially evaluated using 195 RAPD primers which revealed a very low level of genetic variation. To improve the efficiency in the detection of polymorphism, the genomic DNA of all accessions were submitted to digestion with restriction endonucleases prior to PCR amplification. A total of 24 primers combined with restriction digestion of DNA rendered 318 bands, of which 266 (83.65%) were polymorphic. The associations among genotypes were estimated using UPGMA-clustering analysis. The accessions were properly clustered according to pedigree and agronomic features. The ability to distinguish among coffee accessions was greater for RAPD plus restriction digestion than for RAPD alone, providing evidences that the combination of the techniques was very efficient for the estimation of genetic relationship among_C. arabica genotypes.

scholarly journals Assessment of genetic diversity and relationship among some commercial cucumber varieties and genotypes using RAPD markers

2013 ◽  
Vol 6 (1-2) ◽  
pp. 51-63
Author(s):  
SM Faisal ◽  
MS Haque ◽  
KM Nasiruddin ◽  
MM Islam ◽  
MA Shrafuzzaman ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Variability ◽  
Genetic Distance ◽  
Genomic Dna ◽  
Rapd Markers ◽  
Random Amplified Polymorphic Dna ◽  
Upgma Dendrogram ◽  
Cluster 2

Genetic variability among the genotypes of any species could be utilized for its improvement. PCR-based Random Amplified Polymorphic DNA (RAPD) technique was used to determine the genetic diversity and relationship among 10 cucumber varieties and genotypes. Five decamer primers were used to amplify genomic DNA and the primers yielded a total of 54 bands of which 36 bands were polymorphic and 18 bands were monomorphic. The UPGMA dendrogram based on Nei’s (1972) genetic distance indicated segregation of 10 cucumber varieties and genotypes into two main clusters. Variety Joti alone grouped in cluster 1 while variety Green Master, Shahi-50, Shikha, Shila, Shital, Naogaon-5, Shohag-50, Giant Long and genotype CS-043 grouped in cluster 2. Variety Shila was very close to variety Shital with the least genetic distance (0.1712). The highest genetic distance (0.5352) was found between Joti and Naogaon-5. DOI: http://dx.doi.org/10.3329/cujbs.v6i1-2.17081 The Chittagong Univ. J. B. Sci.,Vol. 6(1&2):51-63, 2011

scholarly journals Genetic polymorphism among natural populations of Anacardium humile A. ST-HIL

2020 ◽  
Vol 42 (1) ◽  
Author(s):  
Silvia Correa Santos ◽  
Raquel dos Santos Carvalho ◽  
Livia Maria Chamma Davide
Keyword(s):  
Genetic Diversity ◽  
Genetic Polymorphism ◽  
Genetic Variability ◽  
Genetic Divergence ◽  
Genomic Dna ◽  
Reproductive Strategies ◽  
Rapd Markers ◽  
Phenotypic Diversity ◽  
Diversity Index ◽  
Natural Populations

Abstract The genus Anacardium presents nine species, of these, three have sub-bush size, common in the Cerrado of the Center-West of Brazil. The objective of this work was to evaluate the genetic variability of the species, collected in eleven provenances, using RAPD markers. Genomic DNA from 122 accessions was extracted and amplified with 25 decamer primers. The results indicated polymorphism, ranging from 77.71% to 96.18%. The distribution of genetic diversity among and within populations shows that 27.14% of the variability is found between populations and 37.44% within the populations, suggesting the existence of genetic variability that may be related to the reproductive strategies adopted by the species throughout its evolution. The index of variation within the provenances (93.36%) was higher than the index found among populations (6.64%). Molecular analysis indicated that there is genetic divergence between and within the studied populations of Anacardium humile A. St. - Hill. The origin of Itajá-GO presented the highest genetic diversity, presenting the highest values of genetic diversity index, phenotypic diversity and higher percentage of polymorphic loci.

scholarly journals Using RAPD markers for genetic analysis in Three Species of Datura in Iraq

2019 ◽  
Vol 23 (10) ◽  
pp. 27
Author(s):  
Lubna Amir Altiaee ◽  
Akeel H ALassi ◽  
Thammer A. Zahwan
Keyword(s):  
Genetic Variability ◽  
Genetic Analysis ◽  
Genomic Dna ◽  
Rapd Markers ◽  
Datura Stramonium ◽  
Polymorphic Band ◽  
Datura Innoxia ◽  
Datura Metel ◽  
Active Substances

The study amis to develop the evidence genetic of active substances for several kinds of the Datura plant (Datura sp.), So it was procedure steps to isolated the Genomic DNA from leaf of Datura specis    it is (Datura metel, Datura innoxia and Datura stramonium).(  Has been used 51 primers in the experiments of the RAPD markers, but did not show 17 primers including any amplified band while showed in genomic in Datura plants, and 34 primers show results Differentiated locations where all the primers gave a differentiated binds Polymorphic band These results have been invested to study genetic variability among the species involved in study.   http://dx.doi.org/10.25130/tjps.23.2018.165

scholarly journals Implementation of Monmonier's algorithm of maximum differences for the regionalization of forest tree populations as a basis for the selection of seed sources

2010 ◽  
Vol 62 (2) ◽  
pp. 425-430 ◽  
Author(s):  
V. Ivetic ◽  
V. Isajev ◽  
N. Stavretovic ◽  
Snezana Mladenovic-Drinic
Keyword(s):  
Genetic Variability ◽  
Data Processing ◽  
Rapd Markers ◽  
Geographic Location ◽  
Forest Tree ◽  
Genetic Distances ◽  
Seed Sources ◽  
The Matrix ◽  
Reproductive Material ◽  
Selection Of

The regionalization of forest tree populations was researched on an example of beech, as the species with the largest range and the widest ecological amplitude in Serbia. The implementation of Monmonier's algorithm of maximum differences to analyze the spatial distances and the matrix of genetic distances generated by RAPD markers produced different results, depending on the method of addressing the genetic distances, so that data processing should be planned in accordance with the number of samples and their geographic location. The analysis is simple and enables a good visualization of genetic variability barriers which, in combination with the data on the distribution and the geographic barriers, can be utilized for recommending the transfer of forest tree reproductive material.

scholarly journals Genetic variation among South Brazilian accessions of Lippia alba Mill. (Verbenaceae) detected by ISSR and RAPD markers

2009 ◽  
Vol 69 (2) ◽  
pp. 375-380 ◽  
Author(s):  
MF. Manica-Cattani ◽  
J. Zacaria ◽  
G. Pauletti ◽  
L. Atti-Serafini ◽  
S. Echeverrigaray
Keyword(s):  
Genetic Variability ◽  
Rapd Markers ◽  
Molecular Data ◽  
Chemical Characteristics ◽  
Hierarchical Analysis ◽  
Rio Grande Do Sul ◽  
Medicinal Species ◽  
Lippia Alba ◽  
Very High ◽  
Issr Primers

Twenty-seven accessions of Lippia alba Mill. collected in Rio Grande do Sul state, Brazil, were analysed by ISSR and RAPD markers to evaluate their genetic variability and relationships. Six ISSR primers and four RAPD primers generated 120 amplified fragments, most of which were polymorphics. The overall genetic variability among accessions was very high when compared with other plant species. The hierarchical analysis of molecular data (UPGMA) showed low relationship between accessions, and no grouping between accessions of the same chemotype. Canonical functions allowed identifying some variables related with the chemical characteristics of the essential oils. Both ISSR and RAPD markers were efficient to address the genetic diversity of L. alba, and may contribute to the conservation and breeding of this increasingly important aromatic and medicinal species.

scholarly journals Dilution of QuEChERS Extracts Without Cleanup Improves Results in the UHPLC-MS/MS Multiresidue Analysis of Pesticides in Tomato

2021 ◽  
Author(s):  
Fabiane M. Stringhini ◽  
Lucila C. Ribeiro ◽  
Graziela I. Rocha ◽  
Juliana D. de B. Kuntz ◽  
Renato Zanella ◽  
...  
Keyword(s):  
Matrix Effect ◽  
Practical Method ◽  
Analysis Method ◽  
Multiresidue Analysis ◽  
Limit Of Quantification ◽  
Chromatography Tandem Mass Spectrometry ◽  
The Matrix ◽  
Liquid Chromatography Tandem Mass ◽  
Ultrahigh Performance Liquid Chromatography ◽  
Positive Results

AbstractTomato is well-known to be one of the most cultivated and consumed vegetables worldwide and frequently contain pesticide residues. Therefore, a simple multiresidue method was established and validated to determine 129 pesticides and metabolites in tomato samples using a modified acetate QuEChERS without cleanup for sample preparation and determination by ultrahigh-performance liquid chromatography tandem mass spectrometry (UHPLC-MS/MS). Dilution of the raw extract in different proportions of mobile phase was evaluated and a dilution of 10 times presented adequate results improving analysis performance while minimizing the matrix effect. Validation performed according to SANTE guideline presented satisfactory results. Practical method limit of quantification was 0.01 mg kg−1 for most compounds. Recoveries between 70 and 120% with precision ≤ 20% were found for most compounds and spike levels evaluated. Matrix effect results were not significant for most part of compounds. Method proved to be simple, robust, and effective to be applied in routine analysis. Method applicability was performed by analysis of samples commercialized in Brazil and positive results were found demonstrating the importance of the proposed method.

Recrystallization in Ultra-Fine Grain Structures of AA3104 Alloy Processed by ECAP and HPT

2012 ◽  
Vol 715-716 ◽  
pp. 346-353
Author(s):  
H. Paul ◽  
T. Baudin ◽  
K. Kudłacz ◽  
A. Morawiec
Keyword(s):  
High Pressure Torsion ◽  
Deformation Mode ◽  
Second Phase ◽  
Orientation Measurement ◽  
Angular Pressing ◽  
Second Phase Particles ◽  
Average Grain Size ◽  
The Matrix ◽  
Electron Microscopes ◽  
Different Strains

The objective of this study was to determine the effect of deformation mode on recrystallization behavior of severely deformed material. Commercial purity AA3104 aluminum alloy was deformed via high pressure torsion and equal channel angular pressing to different strains and then annealed to obtain the state of partial recrystallization. The microstructure and the crystallographic texture were analysed using scanning and transmission electron microscopes equipped with orientation measurement facilities. The nucleation of new grains was observed in bulk recrystallized samples and during in-situ recrystallization in the transmission microscope. Irrespective of the applied deformation mode, a large non-deformable second phase particles strongly influenced strengthening of the matrix through deformation zones around them. It is known that relatively high stored energy stimulates the nucleation of new grains during the recrystalization. In most of the observed cases, the growth of recrystallized grains occurred by the coalescence of neighboring subcells. This process usually led to nearly homogeneous equiaxed grains of similar size. The diameter of grains in the vicinity of large second phase particles was only occasionally significantly larger than the average grain size. Large grains were most often observed in places far from the particles. TEM orientation mapping from highly deformed zones around particles showed that orientations of new grains were not random and only strictly defined groups of orientations were observed.

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