scholarly journals Genetic markers of moldovan tsigayand karakul sheep

2018 ◽  
Vol 23 ◽  
pp. 93-99
Author(s):  
P. I. Lyutskanov ◽  
O. A. Mashner ◽  
N. S. Marzanov

Aim. The study of the genetic structure of the two created Moldovan types of sheep – Tsigay wool-meat-dairy and karakul astrakhan -meat-and-milk types by the frequency of antigens, genotypes, alleles, homozygosity level and the number of effective alleles. Methods. Genetic analysis was performed using seven blood group systems (A, B, C, D, M, R, I) by the method of setting the hemolysis and agglutination reactions. Results. At MoldovanTsigay sheep, the frequency of antigens in blood group systems varies from 0.05 to 0.95. There are 38 genotypes and 20 alleles. The total homozygosity constituted 0.5393 and the efficacy per allele was 1.866. In contrast to the Tsigay sheep the Moldovan karakul sheep have 136 genotypes and 48 alleles, the total homozygosity is the same – 0.5230, and the efficiency per allele is almost twice higher – 3.3574. Conclusions.Genetic markers are useful in an objective assessment of genetic diversity and the degree of kinship of sheep breeds. Being an integral part of the genofondof the population, they provide valuable information about the changes occurring in it in the breeding process. Keywords: Sheep, antigens, genotypes, alleles, homozygosity.

Author(s):  
Gheorghe HRINCĂ

The main objective of this paper is to measure the relationships between the ecotypes belonging to the Tigai and Tsurcana breeds of Romania and to quantify the genetic diversity within them from the informational statistics point of view, depending on the relief forms of the biotope in which they live, using the genetic variants of some selective genetic markers. The researches were carried out on ecotypes of the most ubiquitous sheep breeds in Romania, Tsigai and Tsurcana whose biotopes are circumscribed by more relief forms: plain, hilly, sub-mountainous and mountainous. The sheep were electrophoretically typified at the determinant loci of haemoglobin and transferrin. Using the allelic frequencies of the haemoglobin and transferrin systems that have been processed by concepts of informational statistics, the differentiation / similarity degree among ecotypes within the two breeds was quantified by the genetic distance (D) and the informational correlation coefficient (Rx,y), as well as the diversity level (d) of the genetic structures of these ecotypes on the basis of informational energy (e). Also, the heterozygosity degree (Ht) at the Hb and Tf loci was calculated in relation to the genetic diversity level. The paper analyzes the causes of genetic similarities and differentiations among the ecotypes of these two breeds at the level of the two biochemical-genetic loci: allelic distribution of haemoglobin and transferrin, altitude of relief forms, habitat conditions etc. The benefits of such studies are also presented for the improvement, breeding and conservation of the ecotypes of these two sheep breeds from Romania.


2001 ◽  
Vol 3 (2) ◽  
pp. 17 ◽  
Author(s):  
Fernando Moreno O. ◽  
James N. Derr ◽  
Nelson Bermúdez G. ◽  
Jorge Ossa L. ◽  
Luzardo Estrada L ◽  
...  

<p>La caracterización genética del ganado criollo colombiano (gcc) ha demostrado el valor de estas razas en los sistemas productivos tropicales, lo que ha despertado el interés para desarrollar programas de conservación y multiplicación. Se adelantó un estudio de análisis genético con las siete razas de ganado criollo colombiano, (rgcc): Blanco Orejinegro (BON), Romosinuano (R), Costeño Con Cuernos (CCC), Sanmartinero (SM), Chino Santandereano (Ch), Hartón del Valle (H) y Casanareño (Ca), utilizando el Cebú (C) como control, con el objeto de evaluar su diversidad genética y relaciones filogenéticas. Se usaron 7 microsatélites (STR) para establecer las distancias genéticas amplificadas mediante PCR. El tamaño de los loci se definió mediante marcaje con ɣ<sup>32</sup> P seguido de un pase en geles de poliacrilamida (PAGE) o marcados con fluorescencia y electroforesis capilar. Los datos se analizaron usando los programas Genepop, GDA y Phylip. El número promedio de alelos por locus fue de 8,9 y Ia heterocigosidad promedia observada fue de o,52. El árbol filogenético construido con el programa Phylip, empleando la distancia de Nei y el algoritmo de Neighbour-joining, agrupó en dos las gcc. En el grupo uno las razas: BON, SM, R, CCC y H; y en el grupo dos las razas: Ch, Ca y C. Los resultados de evaluación filogenética de las gcc indicaron que existe diversidad genética adecuada en estas razas para programas de mejoramiento genético; sin embargo, se recomienda continuar el estudio con un mayor número de marcadores genéticos.</p><p><strong><br /></strong></p><p><strong>Diversity and Phylogenetic Relations of Colombian Criollo Cattle.</strong></p><p>Studies of genetic characterisation of Colombian criollo cattle (gcc) has shown the value of these breeds in tropical production systems; consequently attention is noticeably growing to develop conservation and multiplication programs. A genetic analysis study was conducted including the seven criollo cattle breeds: Blanco Orejinegro (BON), Romosinuano (R), Costeño Con Cuernos (CCC), Sanmartinero (SM), Chino Santandereano (Ch), Hartón del Valle (H) and Casanareño (C), using Cebu as external control breed, with the purpose to evaluate genetic diversity and philogenetic relations. Seven microsatellite (STR) were used to detect length variations amplified by the PCR and sized by means of ɣ<sup>32</sup> P, runned in PAGE or tagged with a fluorescent dye and electrophoresis. Data were analysed using Genepop, GDA and Phylip programs. Mean number of alleles by loci were 8.9 and mean heterozygocity was o.52. The phylogenetic tree developed using Phylip program, the Nei's distance and the neighbour-joining aglorithm grouped in two the gcc. Group one included: Bon, SM, R,CCC and H, and the second group included Ch, Ca, C. Results of the phylogenetic relations of gcc showed that these breeds have adequate genetic diversity for breeding Programs; however we suggest to carry out studies including higher number of genetic markers.</p>


2020 ◽  
Vol 7 (2) ◽  
pp. 3-13
Author(s):  
A. V. Shelyov ◽  
K. V. Kopylov ◽  
S. S. Kramarenko ◽  
A. S. Kramarenko

Aim. Our work was aimed at the evaluation of genetic diversity of three domestic equine breeds which differ by the history of their formation and use. Methods. Genotyping of DNA samples of three breeds of horses, namely, Hucul (78 animals), Thoroughbred (51 animals) and Ukrainian Saddle Horse (152 animals), was conducted by 11 microsatellite loci, recommended by the International Stud Book Committee (ISBC) and the International Society for Animal Genetics (ISAG). The mathematical analysis involved parametric and non-parametric methods of statistics. Results. The results of polymorphism analysis of the gene funds for Hucul, Thoroughbred and Ukrainian Saddle horses by 11 microsatellite DNA loci were fi rst presented in Ukraine. It was demonstrated that the study of microsatellite DNA loci allows both determining the reliability of origin of pedigree animals and controlling population processes in different breeds and the polymorphy of the very breeds. Conclusions. The molecular and genetic analysis of equine breeds, differing by their provenance, demonstrated specifi cities of genetic structure of each breed, which correspond to the formation history of their gene funds. The populational-genetic analysis using different mathematical methods is recommended for the purposes of evaluating and forecasting microevolution processes, controlling gene fund formation both during the breeding work and within the system of preserving genetic biodiversity


2018 ◽  
Vol 51 ◽  
pp. 276-283 ◽  
Author(s):  
Yu. V. Guseev ◽  
О. V. Мelnyk ◽  
E. A. Gladyr ◽  
N. A. Zinovieva

According to the zoological classification Asian water buffaloes (Bubalus bubalis) are divided into two subspecies i.e. river buffalo and swamp buffalo. The river buffalo is bred in Ukraine. The water buffalo is a kind of farm animals, which has been used by the mankind as draft-cattle and for obtaining milk and meat for food since ancient times. Buffaloes have adapted to living in countries with hot humid climate, they are bred around the world, from tropical to temperate regions and even in highland areas. In many Asian countries they are used as financial guarantors for loans and as a financial asset that can be sold if necessary. The breeding of water buffaloes of Asian origin in livestock production does not compete with mankind in the food chain, because these farm animals are undemanding to fodder; they efficiently convert poor quality fodder, such as reed, sedge, shrub vegetation, straw of rice, of rye, of triticale, and of flax etc., and waste products of food and sugar industries caused by processing in foods with high biological value and production of biofertilizers for improving soil fertility and structure. Buffaloes are resistant to pyroplasmosis, anaplasmosis, tuberculosis, brucellosis, hoofed rot, diseases of the reproductive system and other diseases distributed within the species Bos Taurus taurus. Nowadays there are more than 182 million head of the buffalo in the world. Most of their population is concentrated in Asia and is 96.99% (174 mil. head) of the world number; the number in Egypt is 2.24% (3.7 mil. head), in America – 0.64% (4.3 mil. head) and in Europe – 0.15% (459 tsd. head). In Australia, the swamp buffalo is mainly bred, its number is from 70 tsd. to 200 tsd. head. Regardless of the geographical location of countries the buffalo population is intensively increasing in all the continents. During the period of 1961 – 2007 the number of buffalo increased by 54.05% or 85.84 mil. head in Asia, by 37.69% (2.48 mil. head) in Africa, by 6.14% (1.07 mil. head) in America. In Europe, the number of buffalo has declined from 0.73 to 0.25 mil. head or by 270.37%. Unfortunately, the trend of growth of the species Bubalus bubalis in North America and Europe is not observed, the main reason for that is still excessive enthusiasm to the breeding of Holstein cattle. The number of buffaloes in these two continents is less than 1% of the global number of the buffaloes, but thanks to the Italian breeders the reduction of the buffalo population in Europe could be stopped. Developed European countries, the USA, Canada, Israel etc. are gradually increasing buffalo herd and forming a new branch of cattle husbandry i.e. buffalo-breeding. In Ukraine, the number of buffaloes is not significant, but on the total amount of derived milk it is not inferior to the "supermilk" Holstein breed. Milk and meat derived from buffalo may be the basic foundation of organic products for the Ukrainian population. Therefore, the study of genetic diversity of buffaloes is particularly important. One way to study it is to use molecular genetic markers, including sequences of DNA polymorphism of which is caused by differences in the nucleotide sequences of different alleles at one locus. One of these types of genetic markers is microsatellite loci of the DNA. In recent years genetic characteristics of buffaloes with using microsatellites has acquired special distribution. This is confirmed by numerous studies of foreign authors. Despite a number of existing microsatellite loci used for research, genetic analysis with using buffalo microsatellite loci for cattle is very efficient. This paper presents the results of studies of genetic diversity of domestic buffalo population (Bubalus bubalis), the number of which decreased significantly in the recent decades in Ukraine. The material for these studies was 64 buffalo head, which are bred in «Golosеevo» farm, Kyiv region, and private households of residents of the Transcarpathian region. Genomic DNA was isolated from cartilage tissues from ears. Genetic analysis was performed using 11 microsatellite loci (BM1818, BM2113, BM1824, INRA023, ILST006, ETH10, ETH185, ETH225, SPS115, TGLA126, TGLA227), which are recommended by ISAG for genotyping of cattle. The results of studies showed that the average number of alleles per locus was 6.55. The value of observed heterozygosity ranged from 0.260 to 0.980, expected one ranged from 0.291 (BM2113) to 0.753 (TGLA227). All microsatellite loci except BM1818, ETH185 and BM2113 showed high level of polymorphism. The most polymorphic locus was TGLA227. Despite the limited number of buffaloes, in the studied population an excess of heterozygous genotypes at the level of 5.5% was established. It indicates the existence of high genetic variability of population. For TGLA126 was determined the largest excess of heterozygous genotypes – 34.2%, while for BM1818 was fixed maximum deficit of heterozygotes – 27.3%. Despite the use of microsatellite loci, which are recommended for cattle genotyping, the efficiency of their use for genetic analysis of buffaloes was very high (more than 99.99%). It indicates the ability and efficiency of use of selected microsatellite loci for allele pool evaluation and genetic diversity characterization of Ukrainian buffalo population.


2014 ◽  
Vol 21 (5) ◽  
pp. 601-609
Author(s):  
Wang Deyun ◽  
Peng Jie ◽  
Chen Yajing ◽  
Lü Guosheng ◽  
Zhang Xiaoping ◽  
...  

HortScience ◽  
1998 ◽  
Vol 33 (3) ◽  
pp. 534e-534 ◽  
Author(s):  
J. Staub ◽  
Felix Sequen ◽  
Tom Horejsi ◽  
Jin Feng Chen

Genetic variation in cucumber accessions from China was assessed by examining variation at 21 polymorphic isozyme loci. Principal component analysis of allelic variation allowed for the depiction of two distinct groupings of Chinese accessions collected in 1994 and 1996 (67 accessions). Six isozyme loci (Gpi, Gr, Mdh-2, Mpi-2, Pep-gl, and Pep-la) were important in elucidating these major groups. These groupings were different from a single grouping of Chinese 146 accessions acquired before 1994. Allelic variation in Chinese accessions allowed for comparisons with other accessions in the U.S. National Plant Germplasm System (U.S. NPGS) collection grouped by continent and sub-continent. When Chinese accessions taken collectively were compared with an array of 853 C. sativus U.S. NPGS accessions examined previously, relationships differed between accessions grouped by country or subcontinent. Data indicate that acquisition of additional Chinese and Indian cucumber accessions would be strategically important for increasing genetic diversity in the U.S. NPGS cucumber collection.


Life ◽  
2020 ◽  
Vol 10 (7) ◽  
pp. 119
Author(s):  
Adrianna Kilikowska ◽  
Monika Mioduchowska ◽  
Anna Wysocka ◽  
Agnieszka Kaczmarczyk-Ziemba ◽  
Joanna Rychlińska ◽  
...  

Mussels of the family Unionidae are important components of freshwater ecosystems. Alarmingly, the International Union for Conservation of Nature and Natural Resources Red List of Threatened Species identifies almost 200 unionid species as extinct, endangered, or threatened. Their decline is the result of human impact on freshwater habitats, and the decrease of host fish populations. The Thick Shelled River Mussel Unio crassus Philipsson, 1788 is one of the examples that has been reported to show a dramatic decline of populations. Hierarchical organization of riverine systems is supposed to reflect the genetic structure of populations inhabiting them. The main goal of this study was an assessment of the U. crassus genetic diversity in river ecosystems using hierarchical analysis. Different molecular markers, the nuclear ribosomal internal transcribed spacer ITS region, and mitochondrial DNA genes (cox1 and ndh1), were used to examine the distribution of U. crassus among-population genetic variation at multiple spatial scales (within rivers, among rivers within drainages, and between drainages of the Neman and Vistula rivers). We found high genetic structure between both drainages suggesting that in the case of the analyzed U. crassus populations we were dealing with at least two different genetic units. Only about 4% of the mtDNA variation was due to differences among populations within drainages. However, comparison of population differentiation within drainages for mtDNA also showed some genetic structure among populations within the Vistula drainage. Only one haplotype was shared among all Polish populations whereas the remainder were unique for each population despite the hydrological connection. Interestingly, some haplotypes were present in both drainages. In the case of U. crassus populations under study, the Mantel test revealed a relatively strong relationship between genetic and geographical distances. However, in detail, the pattern of genetic diversity seems to be much more complicated. Therefore, we suggest that the observed pattern of U. crassus genetic diversity distribution is shaped by both historical and current factors i.e. different routes of post glacial colonization and history of drainage systems, historical gene flow, and more recent habitat fragmentation due to anthropogenic factors.


Coral Reefs ◽  
2021 ◽  
Author(s):  
Gabriele Gerlach ◽  
Philipp Kraemer ◽  
Peggy Weist ◽  
Laura Eickelmann ◽  
Michael J. Kingsford

AbstractCyclones have one of the greatest effects on the biodiversity of coral reefs and the associated species. But it is unknown how stochastic alterations in habitat structure influence metapopulation structure, connectivity and genetic diversity. From 1993 to 2018, the reefs of the Capricorn Bunker Reef group in the southern part of the Great Barrier Reef were impacted by three tropical cyclones including cyclone Hamish (2009, category 5). This resulted in substantial loss of live habitat-forming coral and coral reef fish communities. Within 6–8 years after cyclones had devastated, live hard corals recovered by 50–60%. We show the relationship between hard coral cover and the abundance of the neon damselfish (Pomacentrus coelestis), the first fish colonizing destroyed reefs. We present the first long-term (2008–2015 years corresponding to 16–24 generations of P. coelestis) population genetic study to understand the impact of cyclones on the meta-population structure, connectivity and genetic diversity of the neon damselfish. After the cyclone, we observed the largest change in the genetic structure at reef populations compared to other years. Simultaneously, allelic richness of genetic microsatellite markers dropped indicating a great loss of genetic diversity, which increased again in subsequent years. Over years, metapopulation dynamics were characterized by high connectivity among fish populations associated with the Capricorn Bunker reefs (2200 km2); however, despite high exchange, genetic patchiness was observed with annual strong genetic divergence between populations among reefs. Some broad similarities in the genetic structure in 2015 could be explained by dispersal from a source reef and the related expansion of local populations. This study has shown that alternating cyclone-driven changes and subsequent recovery phases of coral habitat can greatly influence patterns of reef fish connectivity. The frequency of disturbances determines abundance of fish and genetic diversity within species.


Sign in / Sign up

Export Citation Format

Share Document