scholarly journals Decadal comparison of a diminishing coral community: a study using demographics to advance inferences of community status

PeerJ ◽  
2016 ◽  
Vol 4 ◽  
pp. e1643 ◽  
Author(s):  
Margaret Miller ◽  
Dana E. Williams ◽  
Brittany E. Huntington ◽  
Gregory A. Piniak ◽  
Mark J.A. Vermeij
Keyword(s):  
Demographic Data ◽  
General Pattern ◽  
Coral Community ◽  
Data Sets ◽  
Percent Cover ◽  
Monitoring Methods ◽  
Frequency Distributions ◽  
Coral Abundance ◽  
The Status

The most common coral monitoring methods estimate coral abundance as percent cover, either viain situobservations or derived from images. In recent years, growing interest and effort has focused on colony-based (demographic) data to assess the status of coral populations and communities. In this study, we relied on two separate data sets (photo-derived percent cover estimates, 2002–12, and opportunisticin situdemographic sampling, 2004 and 2012) to more fully infer decadal changes in coral communities at a small, uninhabited Caribbean island. Photo-derived percent cover documented drastic declines in coral abundance including disproportionate declines inOrbicellaspp. While overallin situestimates of total coral density were not different between years, densities of several rarer taxa were.Meandrina meandritesandStephanocoenia interseptaincreased whileLeptoseris cucullatadecreased significantly, changes that were not discernable from the photo-derived cover estimates. Demographic data also showed significant shifts to larger colony sizes (both increased mean colony sizes and increased negative skewness of size frequency distributions, but similar maximum colony sizes) for most taxa likely indicating reduced recruitment.Orbicellaspp. differed from this general pattern, significantly shifting to smaller colony sizes due to partial mortality. Both approaches detected significant decadal changes in coral community structure at Navassa, though the demographic sampling provided better resolution of more subtle, taxon-specific changes.

scholarly journals The Level of Lymphedema Awareness among Women with Breast Cancer in the Kingdom of Saudi Arabia

2021 ◽  
Vol 18 (2) ◽  
pp. 627
Author(s):  
Fatmah Alsharif ◽  
Wedad Almutairi ◽  
Faygah Shibily ◽  
Fatmah Alhothari ◽  
Fidaa Batwa ◽  
...  
Keyword(s):  
Breast Cancer ◽  
Saudi Arabia ◽  
Soft Tissues ◽  
Demographic Data ◽  
Medical Team ◽  
Online Questionnaire ◽  
Kingdom Of Saudi Arabia ◽  
Cross Sectional ◽  
Convenience Sample ◽  
The Status

Background: Lymphedema is a condition in which excessive fluid accumulates in soft tissues. It is a common complication of breast cancer treatments. It can lead to serious consequences and interfere with the activity of daily living. This study aimed to determine the level of awareness of breast-cancer-related lymphedema (BCRL) among women with breast cancer in the Kingdom of Saudi Arabia. This was a descriptive quantitative cross-sectional design that included a convenience sample of women diagnosed with breast cancer in the Kingdom of Saudi Arabia. Data were collected by distributing a self-administrated online questionnaire consisting of four parts, including demographic data (five items), the status of education about BCRL (three items), basic medical history of breast cancer (six items), and BCRL level of awareness of risk factors and management (nine items). Results: In total, 95 out of 135 of participants did not know about lymphedema, 119 of the participants (88.1%) did not receive any explanation about the possibility of lymphedema from their medical team before surgery, and 121 of them (89.6%) did not receive it after surgery. The most significant factor affecting participants’ level of awareness regarding BCRL was the lack of information about the possibility of BCRL occurrence, which was not provided to them by the medical team. Recommendation: Early and continuous education for future management is essential to prevent problems related to BCRL and improve quality of life.

scholarly journals Cost-efficiency assessments of marine monitoring methods lack rigor—a systematic mapping of literature and an end-user view on optimal cost-efficiency analysis

2021 ◽  
Vol 193 (7) ◽  
Author(s):  
Heini Hyvärinen ◽  
Annaliina Skyttä ◽  
Susanna Jernberg ◽  
Kristian Meissner ◽  
Harri Kuosa ◽  
...  
Keyword(s):  
Comparative Studies ◽  
Cost Efficiency ◽  
Cost Benefit ◽  
Marine Ecosystems ◽  
Actual Cost ◽  
Monitoring Methods ◽  
Monitoring Method ◽  
Marine Monitoring ◽  
The Status ◽  
The Cost

AbstractGlobal deterioration of marine ecosystems, together with increasing pressure to use them, has created a demand for new, more efficient and cost-efficient monitoring tools that enable assessing changes in the status of marine ecosystems. However, demonstrating the cost-efficiency of a monitoring method is not straightforward as there are no generally applicable guidelines. Our study provides a systematic literature mapping of methods and criteria that have been proposed or used since the year 2000 to evaluate the cost-efficiency of marine monitoring methods. We aimed to investigate these methods but discovered that examples of actual cost-efficiency assessments in literature were rare, contradicting the prevalent use of the term “cost-efficiency.” We identified five different ways to compare the cost-efficiency of a marine monitoring method: (1) the cost–benefit ratio, (2) comparative studies based on an experiment, (3) comparative studies based on a literature review, (4) comparisons with other methods based on literature, and (5) subjective comparisons with other methods based on experience or intuition. Because of the observed high frequency of insufficient cost–benefit assessments, we strongly advise that more attention is paid to the coverage of both cost and efficiency parameters when evaluating the actual cost-efficiency of novel methods. Our results emphasize the need to improve the reliability and comparability of cost-efficiency assessments. We provide guidelines for future initiatives to develop a cost-efficiency assessment framework and suggestions for more unified cost-efficiency criteria.

scholarly journals Status of the Ex Situ and In Situ Conservation of Brazilian Crop Wild Relatives of Rice, Potato, Sweet Potato, and Finger Millet: Filling the Gaps of Germplasm Collections

Agronomy ◽  
2021 ◽  
Vol 11 (4) ◽  
pp. 638
Author(s):  
Marcelo B. Medeiros ◽  
José F. M. Valls ◽  
Aluana G. Abreu ◽  
Gustavo Heiden ◽  
Suelma Ribeiro-Silva ◽  
...  
Keyword(s):  
Finger Millet ◽  
Ex Situ Conservation ◽  
Gap Analysis ◽  
In Situ Conservation ◽  
Germplasm Collection ◽  
Crop Wild Relatives ◽  
Wild Relatives ◽  
Ex Situ ◽  
The Status

This study presents the status of ex situ and in situ conservation for the crop wild relatives of rice, potato, sweet potato, and finger millet in Brazil, and the subsequent germplasm collection expeditions. This research is part of a global initiative entitled “Adapting Agriculture to Climate Change: Collecting, Protecting, and Preparing Crop Wild Relatives” supported by the Global Crop Diversity Trust. Species of the primary, secondary, and tertiary gene pools with occurrences reported in Brazil were included: Oryza alta Swallen, O. grandiglumis (Döll) Prod., O. latifolia Desv., O. glumaepatula Steud., Eleusine tristachya (Lam.) Lam., E. indica (L.) Gaertn., Solanum commersonii Dunal, S. chacoense Bitter, Ipomoea grandifolia (Dammer) O’Donell, I. ramosissima (Poir.) Choisy, I. tiliacea (Willd.) Choisy, I. triloba L., and I. cynanchifolia Meisn. The status of the ex situ and in situ conservation of each taxon was assessed using the gap analysis methodology, and the results were used to plan 16 germplasm collection expeditions. Seeds of the collected material were evaluated for viability, and the protocols for seed germination and cryopreservation were tested. The final conservation score, resulting from the gap analysis and including the average of the ex situ and in situ scores, resulted in a classification of medium priority of conservation for all the species, with the exception of I. grandifolia (high priority). The total accessions collected (174) almost doubled the total accessions of these crop wild relatives incorporated in Embrapa’s ex situ conservation system prior to 2015. In addition, accessions for practically absent species were collected for the ex situ conservation system, such as Ipomoea species, Eleusine indica, and Solanum chacoense. The methods used for dormancy breaking and low temperature conservation for the Oryza, Eleusine, and Ipomoea species were promising for the incorporation of accessions in the respective gene banks. The results show the importance of efforts to collect and conserve ex situ crop wild relatives in Brazil based on previous gap analysis. The complementarity with the in situ strategy also appears to be very promising in the country.

scholarly journals Assessment of Sampling Effects on Various Satellite-Derived Integrated Water Vapor Datasets Using GPS Measurements in Germany as Reference

2020 ◽  
Vol 12 (7) ◽  
pp. 1170 ◽  
Author(s):  
Cintia Carbajal Henken ◽  
Lisa Dirks ◽  
Sandra Steinke ◽  
Hannes Diedrich ◽  
Thomas August ◽  
...  
Keyword(s):  
Water Vapor ◽  
Pairwise Comparison ◽  
Weather Conditions ◽  
Satellite System ◽  
High Temporal Resolution ◽  
Data Sets ◽  
Frequency Distributions ◽  
Temporal Sampling ◽  
Global Navigation Satellite ◽  
Satellite Instruments

Passive imagers on polar-orbiting satellites provide long-term, accurate integrated water vapor (IWV) data sets. However, these climatologies are affected by sampling biases. In Germany, a dense Global Navigation Satellite System network provides accurate IWV measurements not limited by weather conditions and with high temporal resolution. Therefore, they serve as a reference to assess the quality and sampling issues of IWV products from multiple satellite instruments that show different orbital and instrument characteristics. A direct pairwise comparison between one year of IWV data from GPS and satellite instruments reveals overall biases (in kg/m 2 ) of 1.77, 1.36, 1.11, and −0.31 for IASI, MIRS, MODIS, and MODIS-FUB, respectively. Computed monthly means show similar behaviors. No significant impact of averaging time and the low temporal sampling on aggregated satellite IWV data is found, mostly related to the noisy weather conditions in the German domain. In combination with SEVIRI cloud coverage, a change of shape of IWV frequency distributions towards a bi-modal distribution and loss of high IWV values are observed when limiting cases to daytime and clear sky. Overall, sampling affects mean IWV values only marginally, which are rather dominated by the overall retrieval bias, but can lead to significant changes in IWV frequency distributions.

Recourse to Human Rights Treaty Bodies for Monitoring of the Refugee Convention

2002 ◽  
Vol 20 (1) ◽  
pp. 53-74 ◽  
Author(s):  
Saul Takahashi
Keyword(s):  
Human Rights ◽  
Monitoring Methods ◽  
Refugee Convention ◽  
Body Model ◽  
Number Of Factors ◽  
The World ◽  
Monitoring Mechanism ◽  
The Status ◽  
Treaty Body ◽  
Refugee Issues

Nearly all human rights conventions adopt the treaty body model to monitor states parties' implementation of their treaty obligations. This monitoring mechanism provides for a quasi judicial committee, far detached from sites of many of the human rights violations it reviews. On the other hand, there is no such treaty body for the 1951 Convention relating to the Status of Refugees. Rather, there is the UNHCR; a large operational agency with offices all over the world, including in sites of refugee emergencies. Effective monitoring of human rights conventions would seem to require a number of factors, including independence and transparency. Legitimate monitoring would have to be strong, and would have to be seen to be strong. Criticism raised in recent years of UNHCR's monitoring methods are largely based on frustration with these points. This paper will examine these issues, and also examine whether recourse to the treaty bodies really provides an adequate remedy for refugee rights. The argument of this paper is that while the UNHCR's monitoring of the Refugee Convention is problematic in many respects, the monitoring of refugee issues by the treaty bodies is in many ways incomplete and inconsistent, and that the treaty body model does not provide refugee advocates with a comprehensive solution.

scholarly journals Absence of rDNA amplification in the uninucleolate oocyte of the cockroach Blattella germanica (Oorthoptera: Blattidae).

1976 ◽  
Vol 71 (1) ◽  
pp. 49-58 ◽  
Author(s):  
M D Cave
Keyword(s):  
Ribosomal Rna ◽  
General Pattern ◽  
Blattella Germanica ◽  
Nucleolar Organizer ◽  
Extrachromosomal Dna ◽  
Total Dna ◽  
Cockroach Blattella Germanica ◽  
Rdna Amplification ◽  
Large Nucleolus

Amplification of the genes coding for ribosomal RNA oocurs in the oocytes of a wide variety of organisms. In oocytes of various species of crickets (Orthoptera: Gryllidae) the amplified DNA is contained in a large extrachromosomal DNA body. Multiple nucleoli form about the periphery of the DNA body during the diplotene stage of meiosis I. In contrast to the general pattern of orthopteran oocytes, oocytes of the cockroach Blattella germanica demonstrate a single large nucleolus instead of many nucleoli. In order to determine whether the genes coding for rRNA are amplified in the oocytes of B. germanica, the relative amount of rDNA in oocytes was compared with the rDNA content of spermatocytes and somatic cells. An extrachromosomal DNA body similar to that present in crickets is not present in B. germanica. A satellite DNA band which contains nucleotide sequences complementary to rRNA accounts for approximately 3-5% of the total DNA in somatic and in male and female gametogenic tissues. Female cells contain approximately twice as much rDNA as do male cells. An XX-XO sex-determining mechanism is operative in B. germanica. In situ hybridization with rRNA indicates that the nucleolar organizer is located on one end of the X chromosome and that oocytes do not contain more than twice the amount of rDNA found in spermato cytes. The data indicate that rDNA is not amplified in the uninucleolate oocyte of B germanica.

scholarly journals Spatial Heterogeneity of the Incidence of Powdery Mildew on Hop Cones

Plant Disease ◽  
2006 ◽  
Vol 90 (11) ◽  
pp. 1433-1440 ◽  
Author(s):  
David H. Gent ◽  
Walter F. Mahaffee ◽  
William W. Turechek
Keyword(s):  
Powdery Mildew ◽  
Spatial Heterogeneity ◽  
Power Law ◽  
Binomial Distribution ◽  
Disease Incidence ◽  
Disease Assessment ◽  
Cluster Sampling ◽  
Data Sets ◽  
Ratio Test ◽  
Frequency Distributions

The spatial heterogeneity of the incidence of hop cones with powdery mildew (Podosphaera macularis) was characterized from transect surveys of 41 commercial hop yards in Oregon and Washington from 2000 to 2005. The proportion of sampled cones with powdery mildew ( p) was recorded for each of 221 transects, where N = 60 sampling units of n = 25 cones assessed in each transect according to a cluster sampling strategy. Disease incidence ranged from 0 to 0.92 among all yards and dates. The binomial and beta-binomial frequency distributions were fit to the N sampling units in a transect using maximum likelihood. The estimation procedure converged for 74% of the data sets where p > 0, and a loglikelihood ratio test indicated that the beta-binomial distribution provided a better fit to the data than the binomial distribution for 46% of the data sets, indicating an aggregated pattern of disease. Similarly, the C(α) test indicated that 54% could be described by the beta-binomial distribution. The heterogeneity parameter of the beta-binomial distribution, θ, a measure of variation among sampling units, ranged from 0.01 to 0.20, with a mean of 0.037 and a median of 0.015. Estimates of the index of dispersion ranged from 0.79 to 7.78, with a mean of 1.81 and a median of 1.37, and were significantly greater than 1 for 54% of the data sets. The binary power law provided an excellent fit to the data, with slope and intercept parameters significantly greater than 1, which indicated that heterogeneity varied systematically with the incidence of infected cones. A covariance analysis indicated that the geographic location (region) of the yards and the type of hop cultivar had little effect on heterogeneity; however, the year of sampling significantly influenced the intercept and slope parameters of the binary power law. Significant spatial autocorrelation was detected in only 11% of the data sets, with estimates of first-order autocorrelation, r1, ranging from -0.30 to 0.70, with a mean of 0.06 and a median of 0.04; however, correlation was detected in only 20 and 16% of the data sets by median and ordinary runs analysis, respectively. Together, these analyses suggest that the incidence of powdery mildew on cones was slightly aggregated among plants, but patterns of aggregation larger than the sampling unit were rare (20% or less of data sets). Knowledge of the heterogeneity of diseased cones was used to construct fixed sampling curves to precisely estimate the incidence of powdery mildew on cones at varying disease intensities. Use of the sampling curves developed in this research should help to improve sampling methods for disease assessment and management decisions.

scholarly journals In-situ diffraction experiments at the Photon Factory MX beamlines

2014 ◽  
Vol 70 (a1) ◽  
pp. C500-C500
Author(s):  
Yusuke Yamada ◽  
Naohiro Matsugaki ◽  
Masahiko Hiraki ◽  
Ryuichi Kato ◽  
Toshiya Senda
Keyword(s):  
Gas Flow ◽  
Active Area ◽  
Array Detector ◽  
Data Sets ◽  
Diffraction Experiment ◽  
X Ray ◽  
Photon Factory ◽  
Large Active Area ◽  
In Situ Diffraction

Crystallization trial is one of the most important but time-consuming steps in macromolecular crystallography. Once a crystal appears in a certain crystallization condition, the crystal is typically harvested from the crystallization drop, soaked into a cryoprotection buffer, flash-cooled with a liquid nitrogen or cold gas flow and finally evaluated its diffraction quality by an X-ray beam. During these long process, crystal may be damaged and the result from the diffraction experiment does not necessarily reflect a nature of the crystal. On in-situ diffraction experiment, where a crystal in a crystallization drop is directly irradiated to an X-ray beam, a diffraction image from a crystal without any external factors such as harvesting and cryoprotection and, as a result, a nature of crystal can be evaluated quickly. In the Photon Factory, a new table-top diffractometer for in-situ diffraction experiments has been developed. It consists of XYZ translation stages with a plate handler, on-axis viewing system with a large numeric aperture and a plate rack where ten crystallization plates can be placed. These components sit on a common plate and it is placed on the existing diffractometer table in the beamline endstation. The CCD detector with a large active area and a pixel array detector with a small active area are used for acquiring diffraction images from crystals. Dedicated control software and user interface were also developed. Since 2014, user operation of the new diffractometer was started and in-situ diffraction experiments were mainly performed for evaluations of crystallization plates from a large crystallization screening project in our facility. BL-17A [1], one of micro-focus beamlines at the Photon Factory, is planned to be upgraded in March 2015. With this upgrade, a new diffractometer, which has a capability to handle a crystallization plate, will be installed so that diffraction data sets from crystals in crystallization drop can be collected.

scholarly journals Chemistry of the Solar System Revealed in the Interiors of the Giant Planets

2011 ◽  
Vol 7 (S280) ◽  
pp. 249-260 ◽  
Author(s):  
Jonathan I. Lunine
Keyword(s):  
Solar System ◽  
Microwave Radiometer ◽  
Giant Planets ◽  
Isotopic Ratios ◽  
Data Sets ◽  
Terrestrial Water ◽  
Galileo Probe ◽  
Probe Mission ◽  
Juno Mission

AbstractThe giant planets of our solar system contain a record of elemental and isotopic ratios of keen interest for what they tell us about the origin of the planets and in particular the volatile compositions of the solid phases. In situ measurements of the Jovian atmosphere performed by the Galileo Probe during its descent in 1995 demonstrate the unique value of such a record, but limited currently by the unknown abundance of oxygen in the interior of Jupiter–a gap planned to be filled by the Juno mission set to arrive at Jupiter in July of 2016. Our lack of knowledge of the oxygen abundance allows for a number of models for the Jovian interior with a range of C/O ratios. The implications for the origin of terrestrial water are briefly discussed. The complementary data sets for Saturn may be obtained by a series of very close, nearly polar orbits, at the end of the Cassini-Huygens mission in 2016-2017, and the proposed Saturn Probe. This set can only obtain what we have for Jupiter if the Saturn Probe mission carries a microwave radiometer.

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