energy minimum
Recently Published Documents


TOTAL DOCUMENTS

136
(FIVE YEARS 27)

H-INDEX

22
(FIVE YEARS 1)

2021 ◽  
Vol 25 (12) ◽  
pp. 98-106
Author(s):  
Renu Parashar ◽  
Sunita Bansal

Density functional study is used for the decomposition of azidoborane and the possibility of borylnitrene being an intermediate in the formation of iminoborane both in the singlet and triplet state. Our calculations has shown that in the one step concerted manner, both singlet and triplet azidoborane can lead to the formation of iminoborane. A two step path (nitrogen loss followed by isomerization of borylnitrene) is a first order saddle point on the energy surface. However, such a two step process is possible for the triplet azidoborane, since triplet borylnitrene corresponds to a energy minimum on the potential energy surface.


2021 ◽  
Author(s):  
Zhi-Xin Qin ◽  
Matthew Tremblay ◽  
Xin Hong ◽  
Zhongyue Yang

Fleeting intermediates constitute dynamically-stepwise mechanisms. They have been characterized in molecular dynamics trajectories, but whether these intermediates form a free energy minimum to become entropic intermediate remains elusively defined. We developed a computational protocol known as entropic path sampling to evaluate the entropic variation of reacting species along a reaction path based on an ensemble of trajectories. Using cyclopentadiene dimerization as a model reaction, we observed a shallow entropic trap (–T∆S = –0.8 kcal/mol) along the reaction path which originates from an enhanced conformational flexibility as the reacting species enter into a flat energy region. As the reacting species further approach product formation, unfavorable entropic restriction fails to offset the potential energy drop, resulting in no free energy minimum along the post-TS pathway. Our results show that cyclopentadiene dimerization involves an entropic trap that leads to dynamic intermediates with elongated lifetime, but the reaction does not involve entropic intermediates.


Optik ◽  
2021 ◽  
pp. 168006
Author(s):  
Kun Chang ◽  
Longfei Zhu ◽  
Baoluo Yan ◽  
Guangke Jiang ◽  
Dengke Xing ◽  
...  

Molecules ◽  
2021 ◽  
Vol 26 (17) ◽  
pp. 5205
Author(s):  
Yuhan Ye ◽  
Yiqiao Wang ◽  
Min Zhang ◽  
Yun Geng ◽  
Zhongmin Su

At present, most of the reported planar pentacoordinate clusters are similar to the isoelectronic substitution of CAl5+, with 18 counting electrons. Meanwhile, the regular planar pentacoordinate boron systems are rarely reported. Hereby, a sulphur-bridged BAl5S5+ system with a five-pointed star configuration and 17 counting electrons is identified at the global energy minimum through the particle-swarm optimization method, based on the previous recognition on bridged sulphur as the peripheral tactics to the stable planar tetracoordinate carbon and boron. Its outstanding stability has been demonstrated by thermodynamic analysis at 900 K, electronic properties and chemical bonding analysis. This study provides adequately theoretical basis and referable data for its experimental capture and testing.


Entropy ◽  
2021 ◽  
Vol 23 (3) ◽  
pp. 319
Author(s):  
Alianna J. Maren

One of the biggest challenges in characterizing 2-D image topographies is finding a low-dimensional parameter set that can succinctly describe, not so much image patterns themselves, but the nature of these patterns. The 2-D cluster variation method (CVM), introduced by Kikuchi in 1951, can characterize very local image pattern distributions using configuration variables, identifying nearest-neighbor, next-nearest-neighbor, and triplet configurations. Using the 2-D CVM, we can characterize 2-D topographies using just two parameters; the activation enthalpy (ε0) and the interaction enthalpy (ε1). Two different initial topographies (“scale-free-like” and “extreme rich club-like”) were each computationally brought to a CVM free energy minimum, for the case where the activation enthalpy was zero and different values were used for the interaction enthalpy. The results are: (1) the computational configuration variable results differ significantly from the analytically-predicted values well before ε1 approaches the known divergence as ε1→0.881, (2) the range of potentially useful parameter values, favoring clustering of like-with-like units, is limited to the region where ε0<3 and ε1<0.25, and (3) the topographies in the systems that are brought to a free energy minimum show interesting visual features, such as extended “spider legs” connecting previously unconnected “islands,” and as well as evolution of “peninsulas” in what were previously solid masses.


2021 ◽  
Vol 27 (1) ◽  
pp. 23-27
Author(s):  
Viktor Shevko ◽  
Yevgeniy Afimin ◽  
Gulnara Karatayeva ◽  
Alexandra Badikova ◽  
Timur Ibrayev

The article contains the research results of obtaining a ferroalloy from a carbon ferrochrome dust containing 30,2% of Сr2O3, 23.4% of SiO2, 32.7% of MgO, 5.0% of FeO, 1.6% of CaO, 4.5%of Al2O3, 2.3%of C, and 0.3 %-others. The studies were carried out by a thermodynamic modeling method using the HSC-5.1 software package (Outokumpy) based on the principle of the Gibbs energy minimum, the Box-Hunter rototable planning technique and electric melting of the dust in an arc furnace. It was found that the interaction of the dust with carbon under equilibrium conditions and in the presence of iron leads to formation of Cr4C(T>10000C),Cr3C2, Cr7C3,Cr (T>11000C), FeSi (T>13000C), SiC (T>14000C), SiOg and Si(T>15000C). In the temperature range of 1745-19000C and in the presence of 18-34% of carbon and 8% of iron of the dust mass, the resulting ferroalloy contained 18.5-25.2% of Si and 46.8-49.4% of Cr (in this case the silicon extraction degree into the alloy was 60.0-64.4%, the chromium one–99.8%). When the electrosmelting the granulated dust together with coke and steel shavings, the chromium extraction degree into the alloy was 98-99%, the silicon one–53-57%; the obtained ferroalloys containing 18.3-21.9% of silicon and 45.6-53.6%of chromium meet the requirements to FeCrSi23-grade ferrosilicochromium.


2021 ◽  
Author(s):  
Kristal Lopez ◽  
Michael Groves

Hydrogen peroxide is an environmentally friendly oxidizing agent that is important in several industries. It is currently produced industrially via the anthrahydroquinone (AHQ) process where O2 reacts with a functionalised version of anthrahydroquinone to produce H2O2 and anthraquinone. In the previously published DFT pathway for this process the transition of the OOH? radical across the partially dehydrogenated AHQ catalyst was not explored. In this paper, we will use DFT to explore this step and show that there is a deep potential energy minimum that inhibits the OOH<sup>.</sup> from being fully reduced. We then examine other similar sized polycyclic molecules with two OH-groups on the same side that could serve as alternative catalysts without this issue. In this analysis, we identify Phenanthraquinone as a possible alternative and present the pathway for this candidate to produce H2O2 as well as its regeneration with H2.


2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Masahiro Noji ◽  
Tatsushi Samejima ◽  
Keiichi Yamaguchi ◽  
Masatomo So ◽  
Keisuke Yuzu ◽  
...  

AbstractThe thermodynamic hypothesis of protein folding, known as the “Anfinsen’s dogma” states that the native structure of a protein represents a free energy minimum determined by the amino acid sequence. However, inconsistent with the Anfinsen’s dogma, globular proteins can misfold to form amyloid fibrils, which are ordered aggregates associated with diseases such as Alzheimer’s and Parkinson’s diseases. Here, we present a general concept for the link between folding and misfolding. We tested the accessibility of the amyloid state for various proteins upon heating and agitation. Many of them showed Anfinsen-like reversible unfolding upon heating, but formed amyloid fibrils upon agitation at high temperatures. We show that folding and amyloid formation are separated by the supersaturation barrier of a protein. Its breakdown is required to shift the protein to the amyloid pathway. Thus, the breakdown of supersaturation links the Anfinsen’s intramolecular folding universe and the intermolecular misfolding universe.


Sign in / Sign up

Export Citation Format

Share Document