BSA‑Seq and Genetic Mapping Reveals AhRt2 as a Candidate Gene Responsible for Red Testa of Peanut

Testa color is an important trait of peanut (Arachis hypogaea L.). Peanuts with red testa are rich in anthocyanin, are very popular with consumers. However, genes responsible for the red testa trait in peanut are rarely reported. In order to fine map red testa gene, two F4 populations were constructed through the cross of YZ9102 (pink testa) with ZH12 (red testa) and Zhanhong2 (red testa). Genetic analysis indicated that red testa was controlled by a single recessive gene, and named as AhRt2 (Red testa gene 2). Using BSA-seq approach, AhRt2 was preliminary identified in chromosome 12, and further mapped to a 530-kb interval using 220 recombinant lines through linkage mapping. Functional annotation, expression profiling, and sequence variation analyses confirmed that the anthocyanin reductase (ANR), Arahy.IK60LM, was the most likely candidate gene for AhRt2. A SNP in the third exon of AhRt2 changed the encoding amino acids, was associated with red testa of peanut. In addition, a closely linkaged molecular marker to red testa trait was developed. Our result provide insight into the molecular mechanism underlying peanut testa color and provide valuable diagnostic marker for marker-assisted selected (MAS) breeding in peanut.

Breeding of Buckwheat to Reduce Bitterness and Rutin Hydrolysis

Buckwheat (Fagopyrum esculentum) is recognized as an important traditional crop in some regions, and its taste is an important characteristic. Of the three cultivated buckwheat species, Tartary buckwheat (Fagopyrum tataricum) and perennial buckwheat (Fagopyrum cymosum) have strong bitterness in their seeds, which has prevented the wider use of the seeds of these varieties. In Tartary buckwheat, some studies have focused on the cause of strong bitterness generation. Tartary buckwheat seeds contain large amounts of the functional compounds rutin and rutinosidase, and rutin hydrolysis by rutinosidase has been found to be the trigger of rutin hydrolysis. Therefore, a variety with only a trace of rutinosidase and with reduced bitterness is required. The rutinosidase in Tartary buckwheat seeds consists of two major isozymes with very similar enzymatic characteristics, which can hydrolyze flour rutin within several minutes after the addition of water. Recently, the trace-rutinosidase variety Manten-Kirari in Tartary buckwheat was developed. The trace-rutinosidase characteristics were dominated by a single recessive gene. In ‘Manten-Kirari’ dough and foods, such as breads, confectionaries, and noodles, the rutin residual ratio was higher and bitterness was reduced compared to that of the normal-rutinosidase variety. In this review, we summarize the detailed research on the breeding of buckwheat related to reducing bitterness and rutin hydrolysis.

Genetics of Orange, Red and Yellow Root Colours in Tropical Carrots (Dacus Carota L.)

The research was carried out to study the colour inheritance genetics of the root epidermis, core (phloem) and cortex (xylem), from the parental crosses of the varieties Pusa Meghali (Orange), Pusa Rudhira (Red) and Pusa Kulfi (Yellow). Resultant in crosses yielded uniform mixed colours in F1 (first filial generation), thus could enhance the security of human nutrition through the mixture of carotenoids and anthocyanins in the F1. The F1s were advance to produce F2 and backcross (BCP1 and BCP2) generations, and the Chi-square test ratio (χ2) showed that the root colour of the orange epidermis and cortex (xylem) was dominant over the red and yellow colours, and regulated by dominant genes Oe and Ocx from the parent Pusa Meghali. While, the root colour of the orange core (phloem) was found to be recessive to the red (Rc) from Pusa Rudhira and yellow (Yc) colour from Pusa Kulfi, and to be regulated by a single recessive gene (oc) from the parent Pusa Meghali. These finding of genetic inheritance of colours would be useful in the development of bio-fortified F1 hybrids and varieties which are rich in flavonoids.

SNP in Potentially Defunct Tetrahydrocannabinolic Acid Synthase Is a Marker for Cannabigerolic Acid Dominance in Cannabis sativa L.

The regulation of cannabinoid synthesis in Cannabis sativa is of increasing research interest as restrictions around the globe loosen to allow the plant’s legal cultivation. Of the major cannabinoids, the regulation of cannabigerolic acid (CBGA) production is the least understood. The purpose of this study was to elucidate the inheritance of CBGA dominance in C. sativa and describe a marker related to this chemotype. We produced two crossing populations, one between a CBGA dominant cultivar and a tetrahydrocannabinolic acid (THCA) dominant cultivar, and one between a CBGA dominant cultivar and a cannabidiolic acid (CBDA) cultivar. Chemical and genotyping analyses confirmed that CBGA dominance is inherited as a single recessive gene, potentially governed by a non-functioning allelic variant of the THCA synthase. The “null” THCAS synthase contains a single nucleotide polymorphism (SNP) that may render the synthase unable to convert CBGA to THCA leading to the accumulation of CBGA. This SNP can be reliably used as a molecular marker for CBGA dominance in the selection and breeding of C. sativa.

The Study of Genetics of Flower Color in Faba Bean Reveals Generous Diversity to Be Used in the Horticulture Industry

The horticulturally valuable traits of faba bean are poorly explored, including the available information on the genetics of flower color and pattern. This lack of understanding has reduced the inclusion of unique flower color into the horticultural-type faba bean market. The modes of inheritance of two flower colors (red petals and yellow spot on wing petals) were examined through the development of multiple F2 segregating populations. The inheritance of red flower was confirmed for two recessive genes and yellow wing spot inheritance was confirmed for a single recessive gene. These populations led to the discovery of combinations of red and yellow flower color that have not been previously reported. The solid wing petal color gene was confirmed as a single recessive gene. Understanding the inheritance of flower color in faba bean can lead to improvement of current vegetable types and opens up possibilities for ornamental markets.

The Gametic Non-Lethal Gene Gal on Chromosome 5 Is Indispensable for the Transmission of the Co-Induced Semidwarfing Gene d60 in Rice

The gametic lethal gene gal in combination with the semidwarfing gene d60 causes complementary lethality in rice. Here, we attempted to ascertain the existence of gal and clarify male gamete abortion caused by d60 and gal. Through the F2 to F4 generations derived from the cross between D60gal-homozygous and d60Gal-homozygous, progenies of the partial sterile plants (D60d60Galgal) were segregated in a ratio of 1 semidwarf (1 d60d60GalGal):2 tall and quarter sterile (2 D60d60Galgal):6 tall (2 D60d60GalGal:1 D60D60GalGal:2 D60D60Galgal:1 D60D60galgal), which is skewed from the Mendelian ratio of 1 semidwarf:3 tall. However, the F4 generation was derived from fertile and tall heterozygous F2 plants (D60d60GalGal), which were segregated in the Mendelian ratio of 1[semidwarf (d60d60GalGal)]:2[1 semidwarf:3 tall (D60d60GalGal)]:1[tall (D60D60GalGal)]. The backcrossing of D60Gal-homozygous tall F4 plants with Hokuriku 100 resulted in fertile BCF1 and BCF2 segregated in a ratio of 1 semidwarf:3 tall, proving that d60 is inherited as a single recessive gene in the D60d60GalGal genetic background (i.e., in the absence of gal). Further, gal was localized on chromosome 5, which is evident from the deviated segregation of d1 as 1:8 and linkage with simple sequence repeat (SSR) markers. Next-generation sequencing identified the candidate SNP responsible for Gal. In F1 and sterile F2, at the binucleate stage, partial pollen discontinued development. Degraded pollen lost vegetative nuclei, but second pollen mitosis raising two generative nuclei was observed. Thus, our study describes a novel genetic model for a reproductive barrier. This is the first report on such a complementary lethal gene, whose mutation allows the transmission of a co-induced valuable semidwarfing gene d60.

Characterization and Gene Mapping of non-open hull 1 (noh1) Mutant in Rice (Oryza sativa L.)

Hull opening is a key physiological process during reproductive development, strongly affecting the subsequent fertilization and seed development in rice. In this study, we characterized a rice mutant, non-open hull 1 (noh1), which was derived from ethylmethane-sulfonate (EMS)-treated Xinong 1B (Oryza sativa L.). All the spikelets of noh1 developed elongated and thin lodicules, which caused the failure of hull opening and the cleistogamy. In some spikelets of the noh1, sterile lemmas transformed into hull-like organs. qPCR analysis indicated that the expression of A- and E-function genes was significantly upregulated, while the expression of some B-function genes was downregulated in the lodicules of noh1. In addition, the expression of A-function genes was significantly upregulated, while the expression of some sterile-lemma maker genes was downregulated in the sterile lemma of noh1. These data suggested that the lodicule and sterile lemma in noh1 mutant gained glume-like and lemma-like identity, respectively. Genetic analysis showed that the noh1 trait was controlled by a single recessive gene. The NOH1 gene was mapped between the molecular markers ZJ-9 and ZJ-25 on chromosome 1 with a physical region of 60 kb, which contained nine annotated genes. These results provide a foundation for the cloning and functional research of NOH1 gene.

Inheritance of Resistance to Zucchini Yellow Mosaic Virus in Watermelon

Sources of resistance to the Zucchini yellow mosaic virus-Florida strain (ZYMV-FL) have been identified within the Citrullus genus. Inheritance of resistance to ZYMV-FL was studied in PI 595203 (Citrullus mucosospermus), a resistant watermelon accession. The F1, F2, and BC1 progenies derived from the cross ‘Calhoun Gray’ (CHG) × PI 595203 and ‘New Hampshire Midget’ (NHM) × PI 595203 were used to study the inheritance of resistance to ZYMV-FL. Seedlings were inoculated with a severe isolate of ZYMV-FL at the first true leaf stage and rated weekly for at least 6 weeks on a scale of 1 to 9 on the basis of severity of viral symptoms. A single recessive gene (zym-FL) was found to control the high level of resistance to ZYMV-FL in PI 595203.

Inheritance of Resistance to Papaya Ringspot Virus-Watermelon Strain in Watermelon

Sources of resistance to the watermelon strain of papaya ringspot virus-watermelon strain (PRSV-W) have been identified within the watermelon (Citrullus lanatus) germplasm collection. Inheritance of the resistance to PRSV-W was studied in three Citrullus amarus (formerly C. lanatus var. citroides) PI accessions: PI 244017, PI 244019, and PI 485583. Three susceptible parent lines, ‘Allsweet’, ‘Calhoun Gray’, and ‘New Hampshire Midget’, were crossed with resistant PI accessions to develop F1, F2, and BC1 progenies in six families. A single recessive gene was found to control the resistance to PRSV-W in all three resistant PI accessions. Allelism tests indicated that the three PI accessions carry the same resistance allele to PRSV-W. The gene symbol ‘prv’ is proposed for PRSV-W resistance in PI 244017, PI 244019, and PI 485583 in watermelon.

Different Haplotypes Encode the Same Protein for Independent Sources of Zucchini Yellow Mosaic Virus Resistance in Cucumber

Cucumber (Cucumis sativus) production is negatively affected by Zucchini yellow mosaic virus (ZYMV). Three sources of ZYMV resistance have been commercially deployed and all three resistances are conditioned by a single recessive gene. A vacuolar protein sorting–associated protein 4-like (VPS4-like) gene has been proposed as a candidate for ZYMV resistance from cucumber line A192-18. We analyzed the genomic region across the VPS4-like gene for three independent sources of ZYMV resistance in cucumber (A192-18, Dina-1, and TMG-1) and identified three haplotypes across the coding region and considerable variation in the introns. However, the haplotypes in the coding regions of the VPS4-like gene of A192-18, Dina-1, and TMG-1 encode the same protein sequence, revealing the genetic uniformity for ZYMV resistance from diverse germplasm sources.