Terpenoids of plants in arid environments.

Arid and desert environments are characterized by the sparse and discontinuous vegetation cover. Species that have been able to survive difficult bioclimatic conditions and adapt from generation to generation in these areas had to develop physiological and biochemical mechanisms of tolerance and/or resistance. The use of secondary metabolites, specifically terpenoids, is predominant in most of the biotic and abiotic interactions in which these plants are involved. Studies have shown their roles in the prevention of oxidative stress by intervening in thermo-tolerance, water stress, and salt stress generalized in a model of "the protective role of volatile compounds" explained by a single biochemical mechanism. Other studies have proven the functions of terpenoids in direct and indirect defenses against natural enemies, herbivores, and pathogenic microorganisms, in the attraction of pollinators, in competition and facilitation and other interactions between plants. This review mainly summarizes the recent research progress on the adaptation mechanisms of plants in arid environments and the biological and ecological roles of terpenoids in the various biotic and abiotic interactions.

Biotic and Abiotic Interactions Shape Seed Germination of a Fire-Prone Species

Both biotic and abiotic environmental filters drive the occurrence, distribution, and persistence of plant species. Amongst drivers that influence the distribution of plants in harsh environments, seed predation and temperature are particularly important in habitats that are prone to fire. In this study, we highlight the combined effects of predation and high temperature simulating fire to understand its effects on the germination percentage and germination speed of the fire prone species Copaifera oblongifolia. Groups of seeds attacked by the beetles Rhinochenus brevicollis and Apion sp., seeds manipulated by the ant Atta laevigata, and seeds left intact were put to germinate in controlled environments. To evaluate the effects of abiotic filters, seeds with intact elaiosomes and seeds with elaiosomes removed by the ant Atta laevigata were exposed to temperatures of 27, 60, 100, and 200 °C. The results showed that only 2.8% of the seeds attacked by R. brevicollis germinated. Seeds attacked by Apion sp. germinated faster, followed by seeds with their elaiosomes removed and seeds with intact elaiosomes. Seeds attacked by Apion sp. had the lowest germination percentage. The temperature of 200 °C killed seed embryos, whereas seeds exposed to 100 °C took longer to germinate than seeds exposed to other temperatures. Our results reveal that fire intensity and seed damage are important drivers of seed germination of C. oblongifolia.

Dispersal and fire limit Arctic shrub expansion

Arctic shrub expansion has been widely reported in recent decades, with large impacts on carbon budgets, albedo, and warming rates in high latitudes. However, predicting shrub expansion across regions remains challenging because the underlying controls remain unclear. Observational studies and models typically use relationships between observed shrub presence and current environmental suitability (climate and topography) to predict shrub expansion, but such approaches omit potentially important biotic-abiotic interactions and non-stationary relationships. Here, we use long-term high-resolution satellite imagery across Alaska and western Canada to show that observed shrub expansion has not been controlled by environmental suitability during 1984-2014, but rather can only be explained by accounting for seed dispersal and fire. These findings provide the impetus for better observations of recruitment and for incorporating currently underrepresented processes of seed dispersal and fire in land models to project shrub expansion and future climate feedbacks. Integrating these dynamic processes with projected fire extent and climate, we estimate that shrubs will expand into 25% of the non-shrub tundra by 2100, in contrast to 39% predicted using a relationship with increasing suitability alone. Thus, using environmental suitability alone likely overestimates and misrepresents the spatial pattern of shrub expansion and its associated carbon sink.

Unveiling Ecological and Genetic Novelty within Lytic and Lysogenic Viral Communities of Hot Spring Phototrophic Microbial Mats

Hot springs harbor microbial communities dominated by a limited variety of microorganisms and, as such, have become a model for studying community ecology and understanding how biotic and abiotic interactions shape their structure. Viruses in hot springs are shown to be ubiquitous, numerous, and active components of these communities.

Infectious Disease Ecology of Wild Birds

Disease ecology is an interdisciplinary field that recognizes that the host–parasite interaction is shaped by the environment and can affect and be affected by the processes that occur across all levels of ecological organization. This book focuses on the dynamics of infectious diseases for wild avian hosts across different scales of biological organization—from within-host processes to landscape-level patterns. Parasite–bird interactions are both influenced by and have consequences for every level of ecological hierarchy, from the physiology, behavior, and evolution of individual hosts up to the complex biotic and abiotic interactions occurring within biological communities and ecosystems. As the most diverse group of extant vertebrates, birds have evolved to utilize every ecological niche on earth, giving them the capacity to serve as a host of pathogens in every part of the world. The diversity of birds is outmatched only by the diversity of the parasite fauna infecting them. Given the overwhelming diversity of both avian hosts and their parasites, we have only scratched the surface regarding the role that pathogens play in avian biology and the role that birds play in the maintenance and spread of zoonotic pathogens. In addition to this understudied diversity, parasite–bird interactions are increasingly occurring in rapidly changing global environments—thus, their ecology is changing—and this shapes the complex ways by which parasites influence the interconnected health of birds, humans, and shared ecosystems. The chapters in this book illustrate that the understanding of these complex and multiscale interactions requires an inherently integrative approach.

A Bird’s Eye View of Avian Disease Ecology

Wild birds are a source of joy and fascination to people worldwide and unmatched in their capacity to connect people to nature. Yet, the fate of wild birds is being threatened by human activities that alter and destroy habitat, increase pollution, and contribute to global climate change. Pathogens and parasites pose another threat to birds—a threat that we are just beginning to uncover. The chapter explores avian disease ecology and the ways in which the avian host–parasite interaction is both influenced by and has consequences for every level of ecological hierarchy, from the physiology, behavior, and evolution of individual hosts to the complex biotic and abiotic interactions occurring within biological communities and ecosystems. In addition, these diverse parasite–bird interactions are increasingly occurring in rapidly changing global environments—their ecology is changing—and this shapes the complex ways by which parasites influence the interconnected health of birds, humans, and shared ecosystems.

Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding

Species may co-occur due to responses to similar environmental conditions, biological associations, or simply because of coincident geographical distributions. Disentangling patterns of co-occurrence and potential biotic and abiotic interactions is crucial to understand ecosystem function. Here, we used DNA metabarcoding data from litter and mineral soils collected from a longitudinal transect in Amazonia to explore patterns of co-occurrence. We compared data from different Amazonian habitat types, each with a characteristic biota and environmental conditions. These included non-flooded rainforests (terra-firme), forests seasonally flooded by fertile white waters (várzeas) or by unfertile black waters (igapós), and open areas associated with white sand soil (campinas). We ran co-occurrence network analyses based on null models and Spearman correlation for all samples and for each habitat separately. We found that one third of all operational taxonomic units (OTUs) were bacteria and two thirds were eukaryotes. The resulting networks were nevertheless mostly composed of bacteria, with fewer fungi, protists, and metazoans. Considering the functional traits of the OTUs, there is a combination of metabolism modes including respiration and fermentation for bacteria, and a high frequency of saprotrophic fungi (those that feed on dead organic matter), indicating a high turnover of organic material. The organic carbon and base saturation indices were important in the co-occurrences in Amazonian networks, whereas several other soil properties were important for the co-exclusion. Different habitats had similar network properties with some variation in terms of modularity, probably associated with flooding pulse. We show that Amazonian microorganism communities form highly interconnected co-occurrence and co-exclusion networks, which highlights the importance of complex biotic and abiotic interactions in explaining the outstanding biodiversity of the region.

Review of Aquatic Biodiversity Dynamics in the Okavango Delta: Resilience in a Highly Fluctuating Environment

Wetlands are key ecosystems of high biological diversity that provide valuable ecosystem services. These are particularly important in water stressed semi-arid countries, which enhances their vulnerability to degradation. The Okavango Delta, a key wetland in Botswana, is characterised by dynamic inter and intra specific interactions. There are dynamic biotic and abiotic interactions in the system that enhances its resilience. The flood pulse is the main factor mediating bio-physical dynamics in this system. Despite the various perturbations that have been experienced in the system, the Delta has always been able to absorb them and retain its character at the general ecosystem level. These notwithstanding, there have been some changes at the local scale where the Delta has shifted regimes and entered into altered states as a consequence of either channel or lagoon failure. Management of these systems should ensure that their dynamic characteristics are maintained, and this is enshrined within the panarchy concept. Adopting the resilience framework in natural resources management allows for flexibility in devising management strategies to respond to future unexpected events.

Assessing biotic and abiotic interactions of micro-organisms in Amazonia through co-occurrence networks and DNA metabarcoding

Species may co-occur due to responses to similar environmental conditions, biological associations, or simply because of coincident geographical distributions. Disentangling patterns of co-occurrence and potential biotic and abiotic interactions is crucial to understand ecosystem function. Here we used DNA metabarcoding data from litter and mineral soils collected from a longitudinal transect in Amazonia to explore patterns of co-occurrence. We compared data from different Amazonian habitat types, each with a characteristic biota and environmental conditions. These included non-flooded rainforests (terra-firme), forests seasonally flooded by fertile white waters (várzeas) or by unfertile black waters (igapós), and open areas associated with white sand soil (campinas). We ran co-occurrence network analyses based on null models and Spearman correlation for all samples and for each habitat separately. We found that one third of all operational taxonomic units (OTUs) were bacteria and two thirds were eukaryotes. The resulting networks were nevertheless mostly composed of bacteria, with fewer fungi, protists, and metazoans. Considering the functional traits of the OTUs, there is a combination of metabolism modes including respiration and fermentation for bacteria, and a high frequency of saprotrophic fungi (those that feed on dead organic matter), indicating a high turnover of organic material. The organic carbon and base saturation indices were important in the co-occurrences in Amazonian networks, whereas several other soil properties were important for the co-exclusion. Different habitats had similar network properties with some variation in terms of modularity, probably associated with flooding pulse. We show that Amazonian micro-organism communities form highly interconnected co-occurrence and co-exclusion networks, which highlights the importance of complex biotic and abiotic interactions in explaining the outstanding biodiversity of the region.

Effects of topographic factors on distribution of cacti along an elevation gradient in Brazilian Caatinga

The Cactacea family comprises 128 genera and 1450 species with predominantly neotropical distribution. Cacti are commonly found in arid and semi-arid regions and have great ecological relevance due to their interactions with animals and other groups of plants. Abiotic interactions, such as topography, altitude, rainfall, temperature and soils, also influence the composition and distribution of cacti. The objective of the present study was to assess patterns of species composition and distribution for cacti along an elevation gradient in Brazilian Caatinga vegetation. Four transects (composed by 25 plots of 100 m² each) were established at each of two mountain sites. The topographic variables of elevation, slope, rockiness and soil depth were evaluated to determine if they affect the distribution of richness and abundance of cacti along the elevation gradient using Spearman's (rs) correlation coefficient. A total of 554 individuals of five cacti species (Pilosocereus gounellei, Pilosocereus pachycladus, Tacinga palmadora, Tacinga inamoena and Melocactus zehntneri) were sampled. Cacti richness and abundance were found to be negatively correlated with elevation, slope and rockiness, and positively correlated with soil depth (p<0.05). All species exhibited aggregate spatial distribution patterns, which may be related to different environmental conditions produced by interactions among topographic variables (slopes, rockiness and soil depth), that synergistically influence the patterns of species richness and abundance along the elevation gradient.