structural characterisation
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2022 ◽  
Vol 13 (1) ◽  
Author(s):  
Katharina Braunger ◽  
Jiyoon Ahn ◽  
Matthijs M. Jore ◽  
Steven Johnson ◽  
Terence T. L. Tang ◽  
...  

AbstractActivation of the serum-resident complement system begins a cascade that leads to activation of membrane-resident complement receptors on immune cells, thus coordinating serum and cellular immune responses. Whilst many molecules act to control inappropriate activation, Properdin is the only known positive regulator of the human complement system. By stabilising the alternative pathway C3 convertase it promotes complement self-amplification and persistent activation boosting the magnitude of the serum complement response by all triggers. In this work, we identify a family of tick-derived alternative pathway complement inhibitors, hereafter termed CirpA. Functional and structural characterisation reveals that members of the CirpA family directly bind to properdin, inhibiting its ability to promote complement activation, and leading to potent inhibition of the complement response in a species specific manner. We provide a full functional and structural characterisation of a properdin inhibitor, opening avenues for future therapeutic approaches.


Author(s):  
Mukul Sharma ◽  
Pushpendra Singh

Abstract: TlyA proteins are related to distinct functions in a diverse spectrum of bacterial pathogens including mycobacterial spp. There are several annotated proteins function as hemolysin or pore forming molecules that play an important role in the virulence of pathogenic organisms. Many studies reported the dual activity of mycobacterial TlyA as ‘hemolysin’ and ‘S-adenosylmethionine dependent rRNA methylase’. To act as a hemolysin, a sequence must have a signal sequence and transmembrane segment which helps the protein to enter the extracellular environment. Interestingly, the mycobacterial tlyA has neither a traditional signal sequences of general/sec/tat pathways nor any transmembrane segments are present. Still it can reach the extracellular milieu with the help of non-classical signal mechanisms. Also, retention of tlyA in cultivable mycobacterial pathogens (such as Mycobacterium tuberculosis and M. marinum) as well as uncultivated mycobacterial pathogens despite their extreme reductive evolution (such as M. leprae, M. lepromatosis and M. uberis) suggests its crucial role in evolutionary biology of pathogenic mycobacteria. Numerous virulence factors have been characterised from the uncultivable mycobacteria but the information of TlyA protein is still limited in terms of molecular and structural characterisation. The genomic insights offered by comparative analysis of TlyA sequences and its conserved domains reveal its pore forming activity which further confirms its role as a virulence protein, particularly in uncultivable mycobacteria. Therefore, this review presents a comparative analysis of mycobacterial TlyA family by sequence homology and alignment to improve our understanding of this unconventional hemolysin and RNA methyltransferase TlyA of uncultivable mycobacteria.


2022 ◽  
pp. 379-382
Author(s):  
A Burrows ◽  
A Pantazidis ◽  
C Mirodatos ◽  
C J Kiely

2022 ◽  
Vol 122 ◽  
pp. 107117
Author(s):  
Lara Manzocco ◽  
Stella Plazzotta ◽  
Jeffery Powell ◽  
Auke de Vries ◽  
Dérick Rousseau ◽  
...  

2022 ◽  
Author(s):  
Stephen J Walsh ◽  
Soleilmane Omarjee ◽  
Friederike M. Dannheim ◽  
Dominique-Laurent Couturier ◽  
Dorentina Bexheti ◽  
...  

The development of divinylpyrimidine (DVP) reagents for the synthesis of antibody-drug conjugates (ADCs) with in vivo efficacy and tolerability is reported. Detailed structural characterisation of the synthesised ADCs was first...


2022 ◽  
Author(s):  
Tyson N Dais ◽  
Rina Takano ◽  
Takayuki Ishida ◽  
Paul Plieger

The synthesis and structural characterisation of four new heterometallic tetranuclear complexes is reported. Three L3Ni3Ln type complexes, where Ln = La (C1), Eu (C2), and Gd (C3), have been fully...


2021 ◽  
Author(s):  
Elizabeth Bell ◽  
Ross Smithson ◽  
Siobhan Kilbride ◽  
Jake Foster ◽  
Florence Hardy ◽  
...  

The recent discovery of a hydrolytic enzyme, IsPETase, that can deconstruct poly(ethylene) terephthalate (PET), has sparked great interest in biocatalytic approaches to recycle plastics. Realisation of commercial utility will require the development of robust engineered enzymes that meet the demands of industrial processes. Although rationally engineered variants of PETases have been reported, enzymes that have been experimentally optimised through iterative rounds of directed evolution - the go-to method for engineering industrially useful biocatalysts – have not yet been described. Here, we report the development and implementation of an automated, high-throughput directed evolution platform for engineering polymer degrading enzymes. Evaluation of >13,000 IsPETase variants, applying catalytic activity at elevated temperatures as a primary selection pressure, afforded a HotPETase variant with 21 mutations that has a melting temperature of 82.5C and can therefore operate near or above the glass transition temperature of PET (60-70C). HotPETase can depolymerise semi-crystalline PET more rapidly than previously reported PETases and can selectively deconstruct the PET component of a laminated packaging multi-material. Structural characterisation of HotPETase reveals several interesting features that have emerged during evolution to improve thermotolerance and catalytic performance. Our study establishes laboratory evolution as a platform to engineer useful plastic degrading enzymes to underpin biocatalytic plastic recycling processes.


2021 ◽  
Author(s):  
Su Datt Lam ◽  
Vaishali P Waman ◽  
Christine Orengo ◽  
Jonathan Lees

AbstractCoronavirus disease 2019 (COVID-19) caused by SARS-CoV-2 is an ongoing pandemic that causes significant health/socioeconomic burden. Variants of concern (VOCs) have emerged which may affect transmissibility, disease severity and re-infection risk. Most studies focus on the receptor-binding domain (RBD) of the Spike protein. However, some studies suggest that the Spike N-terminal domain (NTD) may have a role in facilitating virus entry via sialic-acid receptor binding. Furthermore, most VOCs include novel NTD variants. Recent analyses demonstrated that NTD insertions in VOCs tend to lie close to loop regions likely to be involved in binding sialic acids. We extended the structural characterisation of these putative sugar binding pockets and explored whether variants could enhance the binding to sialic acids and therefore to the host membrane, thereby contributing to increased transmissibility. We found that recent NTD insertions in VOCs (i.e., Gamma, Delta and Omicron variants) and emerging variants of interest (VOIs) (i.e., Iota, Lambda, Theta variants) frequently lie close to known and putative sugar-binding pockets. For some variants, including the recent Omicron VOC, we find increases in predicted sialic acid binding energy, compared to the original SARS-CoV-2, which may contribute to increased transmission. We examined the similarity of NTD across a range of related Betacoronaviruses to determine whether the putative sugar-binding pockets are sufficiently similar to be exploited in drug design. Despite global sequence and structure similarity, most sialic-acid binding pockets of NTD vary across related coronaviruses. Typically, SARS-CoV-2 possesses additional loops in these pockets that increase contact with polysaccharides. Our work suggests ongoing evolutionary tuning of the sugar-binding pockets in the virus. Whilst three of the pockets are too structurally variable to be amenable to pan Betacoronavirus drug design, we detected a fourth pocket that is highly structurally conserved and could therefore be investigated in pursuit of a generic drug. Our structure-based analyses help rationalise the effects of VOCs and provide hypotheses for experiments. For example, the Omicron variant, which has increased binding to sialic acids in pocket 3, has a rather unique insertion near pocket 3. Our work suggests a strong need for experimental monitoring of VOC changes in NTD.


2021 ◽  
Vol 5 (4) ◽  
pp. 83
Author(s):  
Gurpreet Singh Suri

There has been a considerable amount of interest in the ion-exchange properties of layered zirconium phosphates. Potential applications in the remediation of nuclear waste have renewed interest in these inorganic materials, due to their high stability under the acidic conditions typically found in legacy waste pools. It has been well documented that the substitution of metals with different ionic radii into the frameworks of inorganic materials can alter the chemical properties including ion-exchange selectivity. The work presented here focusses on the synthesis and characterisation of yttrium-doped α-zirconium phosphates which are reported for the first time. Two different synthetic methods were used, reflux and hydrothermal syntheses, and the products were characterised by various methods such as powdered X-ray diffraction, MAS-NMR and scanning electron microscopy. It was found that up to 15% of zirconium could be replaced by yttrium before any noticeable impurity phases could be observed. Rietveld refinement from the doping showed that the products did not obey the Vegard’s law. However, the ion-exchange results clearly showed enhanced capacities and selectivity towards Co2+ ions for the substituted materials.


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