SIVgsn-99CM71 Vpu employs different amino acids to antagonize human and greater spot-nosed monkey BST-2

Viral protein U (Vpu) is an accessory protein encoded by human immunodeficiency virus type 1 (HIV-1) and certain simian immunodeficiency virus (SIV) strains. Some of these viruses were reported to use Vpu to overcome restriction by BST-2 of their natural hosts. Our own recent report revealed that Vpu of SIVgsn-99CM71 (SIVgsn71) antagonizes human BST-2 through two AxxxxxxxW motifs (A 22 W 30 and A 25 W 33 ) whereas antagonizing BST-2 of its natural host, greater spot-nosed monkey (GSN), involved only A 22 W 30 motif. Here we show that residues A 22 , A 25 , W 30 , and W 33 of SIVgsn71 Vpu are all essential to antagonize human BST-2, while, neither single mutation of A 22 nor W 30 affected the ability to antagonize GSN BST-2. Similar to A 18 , which is located in the middle of the A 14 xxxxxxxW 22 motif in HIV-1 NL4-3 Vpu and is essential to antagonize human BST-2, A 29 , located in the middle of the A 25 W 33 motif of SIVgsn71 Vpu was found to be necessary for antagonizing human but not GSN BST-2. Further mutational analyses revealed that residues L 21 and K 32 of SIVgsn71 Vpu were also essential for antagonizing human BST-2. On the other hand, the ability of SIVgsn71 Vpu to target GSN BST-2 was unaffected by single amino acid substitutions but required multiple mutations to render SIVgsn71 Vpu inactive against GSN BST-2. These results suggest additional requirements for SIVgsn71 Vpu antagonizing human BST-2, implying evolution of the bst-2 gene under strong selective pressure. Importance Genes related to survival against life-threating pathogens are important determinants of natural selection in animal evolution. For instance, BST-2, a protein showing broad-spectrum antiviral activity, shows polymorphisms entailing different phenotypes even among primate species, suggesting that the bst-2 gene of primates has been subject to strong selective pressure during evolution. At the same time, viruses readily adapt to these evolutionary changes. Thus, we found that Vpu of an SIVgsn isolate (SIVgsn-99CM71) can target BST-2 from humans as well as from its natural host thus potentially facilitating zoonosis. Here we mapped residues in SIVgsn71 Vpu potentially contributing to cross-species transmission. We found that the requirements for targeting human BST-2 are distinct from and more complex than those for targeting GSN BST-2. Our results suggest that the human bst-2 gene might have evolved to acquire more restrictive phenotype than GSN bst-2 against viral proteins after being derived from their common ancestor.

Hindlimb abnormality reduces locomotor performance in Pelobates cultripes metamorphs but is not predicted by larval morphometrics

Locomotor performance is a fundamental feature commonly related to many animals’ fitness. In most cases, locomotor performance is closely related to morphology of the structures responsible for it, which is therefore under strong selective pressure. Hence, limb abnormality could hinder locomotion and, for that reason, be eradicated by selection, which could explain its overall low prevalence that makes proper research difficult. Here, we took advantage of the moderately high prevalence of hindlimb abnormality in a sample of Iberian spadefoot (Pelobatescultripes) metamorphs developed from tadpoles captured and transferred to the laboratory before selection could act against metamorph abnormality. We tested the hypothesis that limb abnormality impairs locomotor performance. Moreover, we measured several larval and metamorph morphometrics, and checked for differences between normal and abnormal-limbed individuals. We also assessed correlations between hindlimb ratio (hindlimb length/SVL) and jumping performance in normal and abnormal-limbed metamorphs. Larval traits measured could not predict hindlimb abnormality. In metamorphs, only hindlimb ratio differed between normal and abnormal-limbed individuals, being shorter in the latter. Abnormal-limbed metamorphs jumped considerably shorter distances than normal-limbed conspecifics. Therefore, selection against reduced locomotor performance could eliminate limb abnormality from populations. Hindlimb ratio was included in the model as a covariable, and thus controlled for. Consequently, other factors besides shorter hindlimbs, probably hindlimb abnormality itself, could play a role in worse jumping capability of abnormal-limbed individuals. Hindlimb ratio was positively related to jumping distance in both groups, although the relationship was weaker in abnormal-limbed metamorphs.

Transparency, a better camouflage than crypsis in cryptically coloured moths

Predation is a ubiquitous and strong selective pressure on living organisms. Transparency is a predation defence widespread in water but rare on land. Some Lepidoptera display transparent patches combined with already cryptic opaque patches. While transparency has recently been shown to reduce detectability in conspicuous prey, we here test whether transparency decreases detectability in already cryptically-coloured terrestrial prey, by conducting field predation experiments with free avian predators and artificial moths. We monitored and compared survival of a fully opaque grey artificial form (cryptic), a form including transparent windows and a wingless artificial butterfly body. Survival of the transparent forms was similar to that of wingless bodies and higher than that of fully opaque forms, suggesting a reduction of detectability conferred by transparency. This is the first evidence that transparency decreases detectability in cryptic terrestrial prey. Future studies should explore the organisation of transparent and opaque patches on the animal body and their interplay on survival, as well as the costs and other potential benefits associated to transparency on land.

Tracing the History of LINE and SINE Extinction in Sigmodontine Rodents

BackgroundL1 retrotransposons have co-evolved with their mammalian hosts for the entire history of mammals and currently make up to 20% of a typical mammalian genome. B1 retrotransposons are dependent on L1 for retrotransposition and span the evolutionary history of rodents since their radiation. L1s were found to have lost their activity in a group of South American rodents, the Sigmodontinae, and B1 inactivation preceded the extinction of L1 in the same group. Consequently, a basal group of sigmodontines have active L1s but inactive B1s and a derived clade have both inactive L1s and B1s. It has been suggested that B1s became extinct during a long period of L1 quiescence and that L1s subsequently reemerged in the basal group.ResultsHere we investigate the evolutionary histories of L1 and B1 in the sigmodontine rodents and show that L1 activity continued until after the split of the L1-extinct clade and the basal group. After the split, L1s had a small burst of activity in the former group, followed by extinction. In the basal group, activity was initially low but was followed by a dramatic increase in L1 activity. We found the last wave of B1s retrotransposition was large and probably preceded the split between the two rodent clades.ConclusionsGiven that L1s had been steadily retrotransposing during the time corresponding to B1 extinction and that the burst of B1 activity preceding B1 extinction was large, we conclude that B1 extinction was not a result of L1 quiescence. Rather, the burst of B1 activity may have contributed to L1 extinction both by competition with L1 and by putting strong selective pressure on the host to control retrotransposition.

A study of stonefly taxa (Insecta: Plecoptera) inhabiting a saline stream (Arroyo Salado) in southern Spain

Few studies of the ecology of Mediterranean saline streams exist. The strong selective pressure exerted by salinity greatly limits the presence of many taxa, Plecoptera (stoneflies) among them. However, a few species of stoneflies have been reported inhabiting saline streams, particularly components of the thermophilous biocoenosis seemed to have adapted to salinity pulses caused by fluctuations in annual rainfall. For two years, three sites within a saline stream, Arroyo Salado in southern Iberian Peninsula, were sampled to determine the stonefly species composition. Conductivity at the three sites ranged from 2290 to 87792, 2550 to 90824, and 206 to 2818 μS/cm, respectively. A total of seven different stonefly taxa were identified at the three sites: Brachyptera auberti Consiglio, Nemoura lacustris Pictet, Capnioneura libera (Navás), Tyrrhenoleuctra sp., Hemimelaena flaviventris (Pictet), Protonemura alcazaba Aubert, and Perla marginata (Panzer), the latter two only at the site where the stream flowed continuously and conductivity was lower. The possible strategies enabling these stonefly species to surviving in Arroyo Salado are discussed.

Evolutionary Dynamics of Viruses or Microbes, but Not Both

This chapter discusses the evolutionary dynamics of viruses. Preexisting variation in host phenotypes include variants with different levels of susceptibility to viruses, including complete resistance. Formative studies of the basis of the mutation rate relied upon virus–host interactions and the possibility of the evolution of resistance to infection. Viruses represent a strong selective pressure and can induce evolution among hosts. Host evolution, as induced by viruses, includes novel forms of ecological dynamics, including cryptic dynamics. Infection of hosts represents a strong selective pressure for viruses. Viruses that differ in their life history traits vary in their fitness and can invade and replace existing viral strains. The latent period represents a model trait for the further study of the evolution of intermediate phenotypes. Evolution among other traits is also possible, including who infects whom.

Evolution of physiological dormancy multiple times in Melastomataceae from Neotropical montane vegetation

We investigated seed dormancy among species of Melastomataceae from Neotropical montane vegetation of Brazil. Four out of 50 studied species had dormant seeds:Miconia corallina(Miconieae), Tibouchina cardinalis(Melastomeae), Comolia sertularia(Melastomeae) andChaetostoma armatum(Microlicieae). For these four species, germinability of seeds collected in different years was always < 10% and the percentages of embryoless seeds and non-viable embryos were both insufficient to explain low or null germinability. This is the first unequivocal report of seed dormancy in tropical Melastomataceae. The production of seeds with permeable seed coats and fully developed, differentiated embryos indicates the occurrence of physiological dormancy. The reconstructed phylogenetic tree of the 50 species suggests that physiological dormancy evolved multiple times during the evolutionary history of Melastomataceae in this vegetation. Physiological dormancy evolved in species and populations associated with xeric microhabitats, where seeds are dispersed in unfavourable conditions for establishment. Therefore, drought-induced mortality may have been a strong selective pressure favouring the evolution of physiological dormancy in Melastomataceae. We argue that dormancy may have been independently selected in other lineages of Cerrado plants colonizing xeric microhabitats and dispersing seeds at the end of the rainy season. The contributions of our data to the understanding of seed dormancy in tropical montane vegetation are discussed.