Tropical forests are a major reservoir of biodiversity and carbon (C), playing a pivotal role in global ecosystem function and climate regulation. However, most tropical forests, especially Borneo's forests in Southeast Asia, are under intense pressure and threatened by human activities such as logging, mining, agriculture and conversion to industrial plantations. Selective logging is known to reduce both above- and below-ground biomass by removing selected large trees, while increasing deadwood stocks through collateral logging damage and creating large gaps in the canopy. The extent of incidental damage, canopy opening and the rate of C recovery were shown to be primarily related to logging intensity. This thesis assesses the long-term effects of logging intensity on five main C pools in Dipterocarp forests in northern Borneo (Malinau District, North Kalimantan) along a logging intensity gradient ranging from 0 to 57% of initial biomass removed in 1999/2000. Our results showed that total C stocks 16 years after logging ranged from 218-554 Mg C/ha with an average of 314 Mg C/ha. A difference of 95 Mg C/ha was found between low logging intensity (< 2.1% of initial biomass lost) and high logging intensity (> 19%). Most C (approx. 77%) was found in living trees, followed by soil (15%), deadwood (6%) and a small fraction in litter (1%). The imprint of logging intensity was still detectable 16 years after logging. Logging intensity was thus shown to be the main driver explaining the reduction of AGC>20, BGC>20, in deadwood and total C stocks and an increase in deadwood. Our results quantify the long-term effects of logging on forest C stocks, especially in AGC and deadwood. High logging intensity (50% reduction of initial biomass) reduced total C stocks by 27%. AGC recovery was lower in high logging intensity plots, suggesting lowered forest resilience to logging. Our study showed that keeping logging intensity below 20% of the initial biomass can limit the long-term effects of logging on AGC and deadwood stocks.