Impact of Harvest on Switchgrass Leaf Microbial Communities

Switchgrass is a promising feedstock for biofuel production, with potential for leveraging its native microbial community to increase productivity and resilience to environmental stress. Here, we characterized the bacterial, archaeal and fungal diversity of the leaf microbial community associated with four switchgrass (Panicum virgatum) genotypes, subjected to two harvest treatments (annual harvest and unharvested control), and two fertilization levels (fertilized and unfertilized control), based on 16S rRNA gene and internal transcribed spacer (ITS) region amplicon sequencing. Leaf surface and leaf endosphere bacterial communities were significantly different with Alphaproteobacteria enriched in the leaf surface and Gammaproteobacteria and Bacilli enriched in the leaf endosphere. Harvest treatment significantly shifted presence/absence and abundances of bacterial and fungal leaf surface community members: Gammaproteobacteria were significantly enriched in harvested and Alphaproteobacteria were significantly enriched in unharvested leaf surface communities. These shifts were most prominent in the upland genotype DAC where the leaf surface showed the highest enrichment of Gammaproteobacteria, including taxa with 100% identity to those previously shown to have phytopathogenic function. Fertilization did not have any significant impact on bacterial or fungal communities. We also identified bacterial and fungal taxa present in both the leaf surface and leaf endosphere across all genotypes and treatments. These core taxa were dominated by Methylobacterium, Enterobacteriaceae, and Curtobacterium, in addition to Aureobasidium, Cladosporium, Alternaria and Dothideales. Local core leaf bacterial and fungal taxa represent promising targets for plant microbe engineering and manipulation across various genotypes and harvest treatments. Our study showcases, for the first time, the significant impact that harvest treatment can have on bacterial and fungal taxa inhabiting switchgrass leaves and the need to include this factor in future plant microbial community studies.

Ethnographies of Drug Dealers

This chapter examines how ethnographers and qualitative researchers have described drug dealers. Written as an interview, the chapter touches on many of the themes and tropes that have characterized the literature about drug dealers, including their propensity to violence, their hedonism, the apparent increase in the number of women in the business, their problematic family lives, and their lack of attachment to the workforce. The chapter explains how research funding that prioritized drug dealers at the bottom of the economic hierarchy and overlooked those at the top has sometimes led to peculiar characterizations of drug dealers and particular kinds of explanatory frameworks that are often rooted in thin subcultural soil. Ethnography about drug dealers in the service of government-funded research has transformed the field from ones dominated by individuals who conducted community studies to one where ethnographers work as part of a team to produce narrow findings that supplement, contextualize, and help explain survey data. Going forward, the ethnography of drug dealers will benefit from greater awareness of the importance of reflexivity in the field and from partnerships that enrich our understanding and act as a corrective to our individual myopic perspectives.

Measurement Invariance in the Assessment of Mood Between American and Mexican Community Studies

The Health and Retirement Study (HRS), a principal source for American public health research, has numerous global sister studies. Harmonization efforts seeking to establish measurement equivalence amongst these various datasets, is a critical prerequisite to cross-cultural research. Given well-known cultural variability in depressive symptom endorsement, the purpose of this study was to assess measurement invariance in a brief mood measure used in the HRS and the Mexican Health and Aging Study (MHAS). Total sample size using both groups was 15,319 participants (10,931 HRS; 4,388 MHAS) who were 65 and older from Waves 6 to 13 in the HRS and Waves 1 to 4 in the MHAS. MPlus Version 8.4 was used to conduct CFA analyses of measurement invariance. A contemporary approach with categorical data calls for examining threshold invariance first while establishing configural invariance, before examining invariance tests of thresholds, loadings, and intercepts in a second step. Results were that measurement invariance was not supported in this series of two steps with four out of six indices showing model fit in the first model and none of the indices showing model fit in the second model. These findings implied that there were differences in ways of responding to the brief mood measure between HRS and MHAS participants at the conceptual level. Thus, comparisons based on these measures may result in misleading findings and should be interpreted very conservatively. This study adds to the growing body of literature guiding harmonization efforts from the Program on Global Aging, Health and Policy.

The seroprevalence of SARS-CoV-2 during the first wave in Europe 2020: A systematic review

Background A year following the onset of the COVID-19 pandemic, new infections and deaths continue to increase in Europe. Serological studies, through providing evidence of past infection, can aid understanding of the population dynamics of SARS-CoV-2 infection. Objectives This systematic review of SARS-CoV-2 seroprevalence studies in Europe was undertaken to inform public health strategies including vaccination, that aim to accelerate population immunity. Methods We searched the databases Web of Science, MEDLINE, EMBASE, SCOPUS, Cochrane Database of Systematic Reviews and grey literature sources for studies reporting seroprevalence of SARS-CoV-2 antibodies in Europe published between 01/12/2019–30/09/20. We provide a narrative synthesis of included studies. Studies were categorized into subgroups including healthcare workers (HCWs), community, outbreaks, pregnancy and children/school. Due to heterogeneity in other subgroups, we only performed a random effects meta-analysis of the seroprevalence amongst HCWs stratified by their country. Results 115 studies were included spanning 17 European countries, that estimated the seroprevalence of SARS-CoV-2 from samples obtained between November 2019 –August 2020. A total of 54/115 studies included HCWs with a reported seroprevalence among HCWs ranging from 0.7% to 45.3%, which did not differ significantly by country. In community studies significant heterogeneity was reported in the seroprevalence between different age groups and the majority of studies reported there was no significant difference by gender. Conclusion This review demonstrates a wide heterogeneity in reported seroprevalence of SARS-CoV-2 antibodies between populations. Continued evaluation of seroprevalence is required to understand the impact of public health measures and inform interventions including vaccination programmes.

Seabird temporal composition, abundance and habitat use in Punta La Metalera (Arequipa, Southern Peru)

Islands, islets, and guano capes provide a unique variety of habitats for seabirds. Their variability determines the structure and dynamics of the community. Studies about the temporal diversity and habitat use of these systems in southern Peru are lacking. The aim of this study was to analyze the abundance, composition, and behavior of seabirds at Punta La Metalera (El Faro) in the province of Islay in the Arequipa region of southern Peru. We recorded a total of 12 species. One of these is endemic to the Peruvian coast (Cinclodes taczanowskii), one is considered in endangered (Spheniscus humboldti), and four have been assigned near threatened status (Phalacrocorax gaimardi, Pelecanus thagus, Sula variegata and Larosterna inca). Some of these birds belong to the guano bird group. Laridae was the most abundant family due to Larosterna inca, which showed the highest number of individuals. Temporal variation showed that species were most abundant in December and January. The habitat was mainly used for resting, preening, and feeding. However, nesting was also recorded for six species. Based on the little information previously available for this region our findings indicate that Punta La Metalera is an important area for the development and reproduction of some of the species recorded.

Understanding the burden of interstitial lung disease post-COVID-19: the UK Interstitial Lung Disease-Long COVID Study (UKILD-Long COVID)

IntroductionThe COVID-19 pandemic has led to over 100 million cases worldwide. The UK has had over 4 million cases, 400 000 hospital admissions and 100 000 deaths. Many patients with COVID-19 suffer long-term symptoms, predominantly breathlessness and fatigue whether hospitalised or not. Early data suggest potentially severe long-term consequence of COVID-19 is development of long COVID-19-related interstitial lung disease (LC-ILD).Methods and analysisThe UK Interstitial Lung Disease Consortium (UKILD) will undertake longitudinal observational studies of patients with suspected ILD following COVID-19. The primary objective is to determine ILD prevalence at 12 months following infection and whether clinically severe infection correlates with severity of ILD. Secondary objectives will determine the clinical, genetic, epigenetic and biochemical factors that determine the trajectory of recovery or progression of ILD. Data will be obtained through linkage to the Post-Hospitalisation COVID platform study and community studies. Additional substudies will conduct deep phenotyping. The Xenon MRI investigation of Alveolar dysfunction Substudy will conduct longitudinal xenon alveolar gas transfer and proton perfusion MRI. The POST COVID-19 interstitial lung DiseasE substudy will conduct clinically indicated bronchoalveolar lavage with matched whole blood sampling. Assessments include exploratory single cell RNA and lung microbiomics analysis, gene expression and epigenetic assessment.Ethics and disseminationAll contributing studies have been granted appropriate ethical approvals. Results from this study will be disseminated through peer-reviewed journals.ConclusionThis study will ensure the extent and consequences of LC-ILD are established and enable strategies to mitigate progression of LC-ILD.