Population Dynamics Reveal a Core Community of the Common Bottlenose Dolphin (Tursiops truncatus) in Open Waters of the South-Western Gulf of Mexico

The presence of transient and temporary individuals in capture-mark-recapture studies may violate the assumption on equal catchability, and thus yield biased estimates. We investigated the effects of residency patterns on population parameters of bottlenose dolphins inhabiting the coastal waters off the Alvarado Lagoon System (ALS), Veracruz, Mexico. We hypothesized that this population is open but there exists a “core community” that behaves as a closed population. Between 2006 and 2010, we conducted 75 photo-identification surveys and recorded 263 dolphin group encounters, in which 231 dolphins were identified. Individuals present during only one season, classified as transients (n = 85), were excluded from the study, and a standardized residency index (IH4) was computed for each dolphin that remained in the sample (n = 146). We used the K-means clustering method to split the sample into groups based on individual (seasonal, annual) IH4 values. These clusters were named as regular residents (RR, n = 55), occasional residents (OR, n = 45), and occasional visitors (OV, n = 46). The cumulative frequency of newly identified individuals displayed an asymptotic trend for the whole sample and all clusters, indicating that most of the individuals present in the study area during the study period were identified. The assumption of demographic closure was tested to define the core community, and was rejected for the whole sample and the OV cluster (p < 0.001 in both cases), indicating that the population is open. The closure assumption was not rejected for RR and OR clusters (χ2 = 6.88, DF = 13, p = 0.91, and χ2 = 17.8, DF = 16, p = 0.33, respectively), indicating that these clusters were demographically closed over the 5-year period. Thus, we defined this aggregation of individuals as the “core community”. The closed population model Mth indicated that the total abundance of this core community was 123 individuals (95% CI: 114–133). Our results provide quantitative evidence of the existence of a core community in open waters of the Gulf of Mexico, and points toward residency pattern as a main driver of population dynamics. These results highlight the importance of considering residency patterns when dealing with heterogeneity in the sample of a highly mobile species.

Skin lesion and mortality rate estimates for common bottlenose dolphin (Tursiops truncatus) in the Florida Panhandle following a historic flood

Increasing evidence links prolonged freshwater exposure to adverse health conditions, immune deficiencies, and mortality in delphinids. Pensacola, Florida, experienced a record-breaking flood event in April 2014, after which, skin lesions evident of freshwater exposure were observed on common bottlenose dolphins (Tursiops truncatus). Here we assess the potential consequences of the flood on bottlenose dolphin health and mortality. Data from an ongoing study were used to evaluate the relationship between skin lesions (progression, prevalence, and extent) and the flood with respect to changing environmental conditions (salinity). Annual stranding records (2012–2016) from Alabama to the eastern Florida Panhandle were used as an indicator of dolphin health to test the hypothesis that the flood event resulted in increased annual mortality rates. Although salinities remained low for several months, results suggest that there was not the widespread skin lesion outbreak anticipated. Of the 333 unique individuals detected only 20% were seen with skin lesions. There was a significant increase in the proportion of dolphins seen post-flood with lesion extent above background levels (≥ 5%; p = 0.001), however, there were only 11 cases with lesion extent greater than 20%. Skin lesion prevalence increased overall following the flood (p < 0.001), but pairwise comparisons revealed a delayed response with significant increases not detected until the following fall (p = 0.01), several months after salinities returned to expected levels. Regression modeling revealed no significant effects of year, region, or year x region on mortality rates, except in Alabama, where increased mortality rates were likely due to residual impacts from the Deepwater Horizon Oil Spill. This study takes advantage of a natural experiment, highlighting how little is understood about the conditions in which prolonged freshwater exposure leads to negative impacts on dolphin health.

Multi-Tissue Methylation Clocks for Age and Sex Estimation in the Common Bottlenose Dolphin

Accurate identification of individual ages within wild bottlenose dolphins (Tursiops truncatus) is critical for determining population health and the development of population management strategies. As such, we analyzed DNA methylation (DNAm) patterns by applying a custom methylation array (HorvathMammalMethyl40) to both blood (n = 140) and skin samples (n = 87) from known age or approximate age (0–57 years) bottlenose dolphins. We present three bottlenose dolphin specific age estimation clocks using combined blood and skin [48 CpGs, R = 0.93, median absolute error (MAE) = 2.13 years], blood only (64 CpGs, R = 0.97, error = 1.46 years) and skin only (39 CpGs, R = 0.95, error = 2.53). We characterized individual cytosines that correlate with sex and age in dolphins and developed a sex estimator based on 71 CpGs that predicts the sex of any odontocete species with 99.5% accuracy. The presented epigenetic clocks are expected to be useful for conservation efforts and for determining if anthropogenic events affect aging rates in wild populations.

Effects of Multiple Karenia brevis Red Tide Blooms on a Common Bottlenose Dolphin (Tursiops truncatus) Prey Fish Assemblage: Patterns of Resistance and Resilience in Sarasota Bay, Florida

Red tide blooms caused by the toxic dinoflagellate Karenia brevis are natural disturbance events that occur regularly along Florida’s west coast, often resulting in massive fish kills and marine mammal, seabird, and sea turtle mortalities. Limited prior work on the ecological effects of red tides suggests they play an important role in structuring ecosystem dynamics and regulating communities, however specific effects on prey populations and potential alterations to predator-prey interactions are unknown. We surveyed the prey fish assemblage of a top marine predator, the common bottlenose dolphin (Tursiops truncatus), in shallow seagrass habitat in Sarasota Bay, Florida, during 2004–2019, collecting data on prey density, species composition, K. brevis cell densities, and environmental variables. Across eight distinct red tide bloom events, resistance, resilience, and the ecological effects on the prey assemblage varied depending on bloom intensity, season, and frequency. Prey assemblage structure showed significant and distinct short-term shifts during blooms independent of the normal seasonal shifts in prey structure seen during non-bloom conditions. Canonical correspondence analysis indicated a strong influence of K. brevis density on assemblage structure. Blooms occurring primarily in the summer were associated with less initial prey resistance and higher than average annual catch per unit effort (CPUE) 1–3 years following bloom cessation, with bloom frequency prolonging the time needed to reach higher than average annual CPUE. Regardless of season, recovery to pre-bloom prey abundances occurred within 1 year. Sample-based rarefaction and extrapolation indicated significant differences in prey diversity among summer bloom events. This study is a first step in identifying differences in resistance, resilience, and the ecological effects of multiple red tide bloom events of various temporal scales and intensity on a dolphin prey assemblage. Improved understanding of the influence of red tides on estuarine structural dynamics and function can better inform management, and potentially guide mitigation efforts post-bloom.

Common Bottlenose Dolphin, Tursiops truncatus, Behavioral Response to a Record-Breaking Flood Event in Pensacola Bay, Florida

Common bottlenose dolphins, Tursiops truncatus, can suffer health complications from prolonged freshwater exposure; however, little is known about how dolphins behaviorally respond to flood events. We investigated whether dolphins mitigated their freshwater exposure by moving south towards the estuary mouth and/or towards deeper areas with higher salinities in response to a record-breaking flood in Pensacola Bay, Florida. In total, 144 dolphin groups observed during 45 population dynamic surveys were analyzed across two flood-impacted sampling sessions and their respective seasonal control sessions. Kernel density estimates demonstrated southern movement towards the estuary mouth during flood-impacted sessions, but this distribution change was limited. Species distribution models showed that dolphins did not move to deeper areas after the flood and dolphin distribution was not substantially altered by flood-induced salinity changes. The estuary system exhibits strongly stratified waters with broad salinity ranges even during the flood. Dolphins may have mitigated the severity of freshwater exposure by capitalizing on these stratified areas as they continued to use habitat affected by the flood. A lack of avoidance of low salinity could result in this dolphin population being at greater risk for health problems, which should be considered in future population management and conservation.