A two-phase plant-soil feedback experiment to explore biotic influences on Phragmites australis invasion in North American wetlands

Plants can cultivate soil microbial communities that affect subsequent plant growth through a plant-soil feedback (PSF). Strong evidence indicates that PSFs can mediate the invasive success of exotic upland plants, but many of the most invasive plants occur in wetlands. In North America, the rapid spread of European Phragmites australis cannot be attributed to innate physiological advantages, thus PSFs may mediate invasion. Here we apply a two-phase fully-factorial plant-soil feedback design in which field-derived soil inocula were conditioned using saltmarsh plants and then were added to sterile soil mesocosms and planted with each plant type. This design allowed us to assess complete soil biota effects on intraspecific PSFs between native and introduced P. australis as well as heterospecific feedbacks between P. australis and the native wetland grass, Spartina patens. Our results demonstrate that native P. australis experienced negative conspecific feedbacks while introduced P. australis experienced neutral conspecific feedbacks. Interestingly, S. patens soil inocula inhibited growth in both lineages of P. australis while introduced and native P. australis inocula promoted the growth of S. patens suggestive of biotic resistance against P. australis invasion by S. patens . Our findings suggest that PSFs are not directly promoting the invasion of introduced P. australis in North America. Furthermore, native plants like S. patens seem to exhibit soil microbe mediated biotic resistance to invasion which highlights the importance of disturbance in mediating introduced P. australis invasion.

Diversity and asynchrony in soil microbial communities stabilizes ecosystem functioning

Theoretical and empirical advances have revealed the importance of biodiversity for stabilizing ecosystem functions through time. Despite the global degradation of soils, whether the loss of soil microbial diversity can destabilize ecosystem functioning is poorly understood. Here, we experimentally quantified the contribution of soil fungal and bacterial communities to the temporal stability of four key ecosystem functions related to biogeochemical cycling. Microbial diversity enhanced the temporal stability of all ecosystem functions and this pattern was particularly strong in plant-soil mesocosms with reduced microbial richness where over 50% of microbial taxa were lost. The stabilizing effect of soil biodiversity was linked to asynchrony among microbial taxa whereby different soil fungi and bacteria promoted different ecosystem functions at different times. Our results emphasize the need to conserve soil biodiversity for the provisioning of multiple ecosystem functions that soils provide to the society.

Rainfall Alters Permafrost Soil Redox Conditions, but Meta-Omics Show Divergent Microbial Community Responses by Tundra Type in the Arctic

Soil anoxia is common in the annually thawed surface (‘active’) layer of permafrost soils, particularly when soils are saturated, and supports anaerobic microbial metabolism and methane (CH4) production. Rainfall contributes to soil saturation, but can also introduce oxygen, causing soil oxidation and altering anoxic conditions. We simulated a rainfall event in soil mesocosms from two dominant tundra types, tussock tundra and wet sedge tundra, to test the impacts of rainfall-induced soil oxidation on microbial communities and their metabolic capacity for anaerobic CH4 production and aerobic respiration following soil oxidation. In both types, rainfall increased total soil O2 concentration, but in tussock tundra there was a 2.5-fold greater increase in soil O2 compared to wet sedge tundra due to differences in soil drainage. Metagenomic and metatranscriptomic analyses found divergent microbial responses to rainfall between tundra types. Active microbial taxa in the tussock tundra community, including bacteria and fungi, responded to rainfall with a decline in gene expression for anaerobic metabolism and a concurrent increase in gene expression for cellular growth. In contrast, the wet sedge tundra community showed no significant changes in microbial gene expression from anaerobic metabolism, fermentation, or methanogenesis following rainfall, despite an initial increase in soil O2 concentration. These results suggest that rainfall induces soil oxidation and enhances aerobic microbial respiration in tussock tundra communities but may not accumulate or remain in wet sedge tundra soils long enough to induce a community-wide shift from anaerobic metabolism. Thus, rainfall may serve only to maintain saturated soil conditions that promote CH4 production in low-lying wet sedge tundra soils across the Arctic.

The driving role of microhabitats in soil ecology: rebuilding artificial 3D soil-like nanostructured microhabitats for experimental reproducible works

<p>Soil ecosystems are composed of microhabitats that often differ in composition and ecological strategies at the microscale. Besides, the assumption that soil organism behaviour at the ecosystem level is similar to that at microscale may drive unexpected findings. Soil pH at microsites either can differ significantly from whole soil pH. Moreover, the large porosity measured in the whole soil can contrast with water, nutrient, air and waste flow limitations and dramatic constraints to microbial mobility and access to food, when analysed at the microscale, consequent to local pore geometry, connectivity and tortuosity. Incidentally, soil microorganisms, which are present in billions of individuals per gram of soil, have micrometre sizes and prevalently interact with the other soil components at the nano-to-microscale. They colonise soil microhabitat based on the local concentration and composition of air, nutrients and materials. Finally, different organic materials and minerals in the soil induce distinct interactions at microsites, generating diverse organo-mineral associations and different microbial populations. </p><p>The study of soil microhabitats can enable comprehending how the microsites' dynamics can drive to ecosystems' macroscale behaviours. However, the study of soil microhabitats in real conditions, even when investigated in soil mesocosms and microcosms, can be challenging or require complicated and expensive instrumentations to achieve such outcomes. </p><p>The rebuilding of soil microhabitats in model systems can help study the microhabitats' mutual interactions at the microscale. However, it is impossible to reproduce any possible combination of soil components to replicate the multitude of microhabitats existing in natural soil ecosystems. Then, approximations are necessary. </p><p>The present study proposes to recreate an artificial model 3D soil-like microhabitat resulting from the aggregation of the major classes of soil components (mineral particles, organic polymeric components, and microorganisms) in nano- to macro-architectures to study organo-mineral-microbe interactions at the microscale, and enable reproducible works. Electrospinning/electrospraying technologies were chosen for their extreme versatility in creating self-standing 3D complex, porous and functional structures and their proven capacity to permit microbes to grow on the resulting composite fibrous frameworks.</p><p>Bacteria strains of <em>Pseudomonas fluorescens</em> and <em>Burkholderia terricola</em>, typical microbial species populating the rhizosphere soils, will be utilised as microhabitat microbial components for generating a simplified microbiome in the 3D soil-like nanostructures. At first instance, we intended to use microscopy (e.g. SEM, TEM, confocal) as the tool of choice to investigate over time the spatial distribution of bacterial populations throughout the artificial nanostructured soil microhabitat here reproduced, the release of EPS by the bacterial populations and possible interactions. The proposed 3D soil-like nanostructures are supposed to provide the possibility of investigating the microbial lifestyle in microhabitats at different scales, from nm to mm, then linking microbial phenotypic traits to specific soil features.</p>

Is the solubility of inorganic and organically complexed phosphorus in agricultural soils affected by chemical fertilizer and organic carbon additions?

<p>Understanding how the solubility of forms of inorganic and organically-complexed phosphorus (P) in agricultural soil is affected by inputs of organic matter (OM) could inform decisions on sustainable future farming practices. Different forms of OM provide organic P, carbon (C) and other nutrients to the system at different rates, depending upon their recalcitrance to decomposition, and the stoichiometric balance of elements between soil, OM amendment and microbial requirements.</p><p> </p><p>We describe an 18-month pot experiment that tested the hypothesis that additions of organic matter will affect the solubility of P forms in soil. Mesocosms (~30 kg soil) of two agricultural top-soils, of moderate and low P availability, were amended with a commercial humic soil amendment (lignite) or crop residue (barley straw) at two addition levels. Treatments with/without chemical P fertilizer were superimposed on OM treatments. The system was planted with Lolium perenne (perennial rye grass) and exposed to a natural rain and temperature regime. Leachate was collected and analyzed for soluble P, nitrogen and dissolved organic C (DOC) at 6 weekly intervals in order to investigate solubility over time. Destructive sampling at the end of the experiment yielded plant and soil samples for comparison of C, N and P stoichiometry between the treatments.</p><p> </p><p>Initial results showed increases in leachate DOC relating to crop residue OM treatments and a positive effect of P fertilizer on plant biomass in the low P soil. Concentrations of dissolved P in leachate were higher in the moderately P-sorbing soil compared to the highly P-sorbing soil. Ongoing analysis includes measures of biological activity including soil microbial biomass C, N and P by fumigation-extraction and soil phosphatase activity. Chemical measures include total C, N and P, soil carbon forms using Fourier-transform infrared spectroscopy (FTIR), total organic P and water and acid ammonium oxalate extractions. Interpretation of the final results will consider how the release of C and nutrients from OM and their subsequent impact on the system, are controlled by microbial activity and macronutrient stoichiometry. These results should help to inform future research into improving P utilization in agriculture through balancing nutrient ratios to regulate nutrient cycling. Such research seeks to improve agronomic P efficiencies alongside wider benefits associated with the drive to increase soil C.</p>

Ivermectin transfer through percolation and surface runoff from intact soil mesocosms under rainfall simulation

<p>Ivermectin (IVM) is one of the few pharmaceutics that are still used in a preventive, systematic manner in extensive cattle breeding in our study region in the Ardèche region (France), amongst others. It is an efficient antiparasitic agent with an extreme acute toxicity for most invertebrates, especially aquatic organisms like daphnia (ng/l), and is also highly toxic to different fish species (µg/l). Due to its strong sorption to soil and sediment and quick photodegradation, early environmental risk assessments (ERA) conclude a low risk for aquatic organisms. More recent studies conclude an inacceptable risk for daphnia and dung organisms. One of the critical parameters between these contradictory conclusions is IVM export from cow dung and transfer towards the streams.</p><p>The study region is characterized by a Mediterranean climate with a dry summer and intense convective storm events leading to regular flash flood events that coincide with the cattle treatment seasons in spring and autumn. The study region encompasses the Claduègne catchment which is part of the OHMCV observatory and the OZCAR and eLTER research infrastructures.</p><p>The key question concerning the risk for aquatic organisms is to what extent and in which conditions IVM is mobilized and transferred from cow dung to soil and river via surface runoff and percolation in this environment prone to rapid flow processes. We approach this question on the scale of 60*30*22 (L*W*D) cm3 intact soil mesocosms, for which we developed an adapted field sampling and laboratory experimentation case. Soil mescosms are collected in the Claduègne catchment. IVM is applied in form of spiked cow dung at realistic environmental concentrations before simulating several rainfall events, representative of this Mediterranean region. Runoff and drainage water are sampled for major anions (including Br- tracer), non-particulate organic carbon and IVM concentrations on a high temporal frequency in order to gain an insight on the intra- and inter-event dynamics of water and IVM transfer. Tested parameters include dung ageing, soils types, initial soil humidity and consecutive rainfall events.</p><p>The first results highlight the importance of runoff for the overall export of IVM on the event scale. Concerning the water flux, initial humidity is found to determine the runoff / drainage partitioning as well as the rapidity of percolation through the occurrence of preferential flow. In this context, hydrophobicity seems to play an important role.</p>

Mesocosm Experiments at a Tunnelling Construction Site for Assessing Re-Use of Spoil Material as a By-Product

Mechanized excavation of tunnels with Earth Pressure Balance-Tunnel Boring Machines requires the use of foaming agents. The latter contain the anionic surfactant sodium lauryl ether sulphate (SLES) as the main compound. The re-use as a by-product of excavated soil containing foaming agents (spoil material) can pose a risk for soil and particularly for aquatic ecosystems if they are close to the spoil material final destination site. This work reports the chemical results (SLES residual concentrations) and ecotoxicological effects (battery of five tests) of 28 day-mesocosm studies performed at a tunnelling construction site. The soil mesocosms were set up with two different lithologies, which contained four different foaming agent products at the highest amounts used for excavation. The decrease in SLES concentrations and the ecotoxicological tests were performed in soil and its water extract (elutriate) at different times (0, 7, 14, 28 d). Elutriates were prepared in order to simulate a possible SLES leaching from soil to water. The results showed a decrease in SLES over time and different ecotoxicological responses depending not only on the initial amount of each product, but also on the soil lithology and organism tested (aquatic or terrestrial). This study showed how only site-specific ecotoxicological evaluations can ensure a safe management of the spoil material, making possible the re-use of soil and avoiding production of waste.

Dynamics of localised nitrogen supply and relevance for root growth of Vicia faba (‘Fuego’) and Hordeum vulgare (‘Marthe’) in soil

Root growth responds to local differences in N-form and concentration. This is known for artificial systems and assumed to be valid in soil. The purpose of this study is to challenge this assumption for soil mesocosms locally supplied with urea with and without nitrification inhibitor. Soil column experiments with Vicia faba (‘Fuego’) and Hordeum vulgare (‘Marthe’) were performed to investigate soil solution chemistry and root growth response of these two species with contrasting root architectures to the different N-supply simultaneously. Root growth was analysed over time and separately for the fertiliser layer and the areas above and below with X-ray CT (via region growing) and WinRHIZO. Additionally, NO3− and NH4+ in soil and soil solution were analysed. In Vicia faba, no pronounced differences were observed, although CT analysis indicated different root soil exploration for high NH4+. In Hordeum vulgare, high NO3− inhibited lateral root growth while high NH4+ stimulated the formation of first order laterals. The growth response to locally distributed N-forms in soil is species specific and less pronounced than in artificial systems. The combination of soil solution studies and non-invasive imaging of root growth can substantially improve the mechanistic understanding of root responses to different N-forms in soil.