Reaction Center of Rhodobacter Sphaeroides, a Photoactive Protein for pH Sensing: A Theoretical Investigation of Charge Transport Properties

Featured Application: Bio-electronic devices take advantages of some specific duties of biological matter. The specific ability of some proteins to use sunlight is considered for the realization of photo-electronic devices . Here the focus is on the role of the pH, whose variations seem to affect the protein conductance

Comparison of materials for rapid passive collection of environmental DNA

Passive collection is an emerging sampling method for environmental DNA (eDNA) in aquatic systems. Passive eDNA collection is inexpensive, efficient, and requires minimal equipment, making it suited to high density sampling and remote deployment. Here, we compare the effectiveness of nine membrane materials for passively collecting fish eDNA from a 3 million litre marine mesocosm. We submerged materials (cellulose, cellulose with 1% and 3% chitosan, cellulose overlayed with electrospun nanofibers and 1% chitosan, cotton fibres, hemp fibres and sponge with either zeolite or active carbon) for intervals between five and 1080 minutes. We show that for most materials, with as little as five minutes submersion, mitochondrial fish eDNA measured with qPCR, and fish species richness measured with metabarcoding, was comparable to that collected by conventional filtering. Furthermore, PCR template DNA concentrations and species richness were generally not improved significantly by longer submersion. Species richness detected for all materials ranged between 11 to 37 species, with a median of 27, which was comparable to the range for filtered eDNA (19-32). Using scanning electron microscopy, we visualised biological matter adhered to the surface of materials, rather than entrapped, with images also revealing a diversity in size and structure of putative eDNA particles. Environmental DNA can be collected rapidly from seawater with a passive approach and using a variety of materials. This will suit cost and time-sensitive biological surveys, and where access to equipment is limited.

Comparison of materials for rapid passive collection of environmental DNA

Passive collection is an emerging sampling method for environmental DNA (eDNA) in aquatic systems. Passive eDNA collection is inexpensive, efficient, and requires minimal equipment, making it suited to high density sampling and remote deployment. Here, we compare the effectiveness of nine membrane materials for passively collecting fish eDNA from a 3 million litre marine mesocosm. We submerged materials (cellulose, cellulose with 1% and 3% chitosan, cellulose overlayed with electrospun nanofibers and 1% chitosan, cotton fibres, hemp fibres and sponge with either zeolite or active carbon) for intervals between five and 1080 minutes. We show that for most materials, with as little as five minutes submersion, mitochondrial fish eDNA measured with qPCR, and fish species richness measured with metabarcoding, was comparable to that collected by conventional filtering. Furthermore, PCR template DNA concentrations and species richness were generally not improved significantly by longer submersion. Species richness detected for all materials ranged between 11 to 37 species, with a median of 27, which was comparable to the range for filtered eDNA (19-32). Using scanning electron microscopy, we visualised biological matter adhered to the surface of materials, rather than entrapped, with images also revealing a diversity in size and structure of putative eDNA particles. Environmental DNA can be collected rapidly from seawater with a passive approach and using a variety of materials. This will suit cost and time-sensitive biological surveys, and where access to equipment is limited.

Continuous, Large-Scale, and High Proportion of Bioinspired Phosphogypsum Composites via Reactive Extrusion

Biological matter evolution provides an idea for the human design and synthesis of new materials. However, biomimetic materials only stay in laboratory-scale models, and their large-scale industrial applications are yet to be realized. Here, inspired by nacre’s architecture, we report a continuous, large-scale method to fabricate phosphogypsum composites by reactive extrusion strategy. After curing for seven days, with more than 50 wt% of beta-hemihydrate phosphogypsum (β-HPG), the compressive strength and softening coefficient were 24.98 MPa and 0.78, increasing by 110.0% and 20.0%, respectively, compared to the pouring method. The results show that the screw extrusion process can improve the mechanical strength and waterproof properties of β-HPG hydration specimens without any special chemical admixtures and cements.

Bioethanol Production and Proximate Compostion of Waste Potatoes

Bioethanol can be produced from biological matter through processing of food wastes or crops meant for bioethanol production. This study used potato wastes from food vendors in Sokoto, Nigeria as a cheap and renewable carbon source for fermentation of ethanol. Saccharomyces cerevisiae was used to optimize the growth parameters and hydrolysis of potato wastes of the ethanol fermentation aimed at achieving maximum production of bioethanol. Following the analysis, results indicated that, a combination of 0.5, 1.0, 1.5, 2.0, 2.5% of H2SO4 at 121˚C for 20 min in an autoclave can yield complete hydrolysis of all starch contents of potato wastes. The average proximate composition of the potato wastes showed 13.94%,1.42%, 1.72%,1.38%,0.43% and 81.11% of Moisture, Ash, Fat, Crude protein, Fiber and Carbohydrate contents respectively. Positive confirmation of reducing sugars and bioethanol was achieved by using benedicts and Jones’ reagents respectively, Quantitative Test for reducing sugars indicated 124.9 mg/gm, 88.6 mg/gm, 61.45 mg/gm, 53.22 mg/gm, 47.23 mg/gm for 0.5%, 1.5%, 2.0%,2.5% and 3% concentrations respectively.

Biological matter as a material

Although it is usually obvious whether matter is animate or inanimate, it is far from easy to define life. Here we adopt as a definition the three principles identified by Paul Nurse in his recent book ‘What is life?’ There is a resurgence in the physics of life, in particular the materials science of animate matter and the emergence of complexity. This is a departure from molecular biology to a more holistic approach to understanding living matter as a self-organised complex system comprising energy-consuming, purposeful molecular machines, or agents, working collectively. An ultimate goal of synthetic biology is to create animate matter from inanimate matter. First steps have been taken, but there is still a long way to go.

Concepts of Materials Science

This short book describes ten fundamental concepts – big ideas – of materials science. Some of them come from mainstream physics and chemistry, including thermodynamic stability and phase diagrams, symmetry, and quantum behaviour. Others are about restless atomic motion and thermal fluctuations, defects in crystalline materials as the agents of change in materials, nanoscience and nanotechnology, materials design and materials discovery, metamaterials, and biological matter as a material. A cornerstone of materials science is the idea that materials are complex systems that interact with their environments and display the emergence of new science from the collective behaviour of atoms and defects. Great attention is paid to the clarity of explanations using only high school algebra and quoting the occasional useful formula. Exceptionally, elementary calculus is used in the chapter on metamaterials. It is not a text-book, but it offers undergraduates and their teachers a unique overview and insight into materials science. It may also help graduates of other subjects to decide whether to study materials science at postgraduate level.

Sampling Constraints and Variability in the Analysis of Bacterial Community Structures in the Sea Surface Microlayer

The sea surface microlayer (SML) is a thin surface film located at the interface between oceans and the atmosphere. In this study, three SML samplers—polycarbonate membrane (PC), glass plate (GP), and drum sampler (DS)—were used to collect microbiological DNA samples for molecular analysis. Among the three samplers, DS only took half the time to sample the SML compared to GP while PC were able to sample the thinnest SML depth. Biological matter and distinct bacterial communities in the SML were apparent during low wind conditions in samples collected by three samplers. Signs of biological matter [transparent exopolymer particles (TEP) and chlorophyll-a concentrations] depletion, and an increased similarity in the biological communities of the SML and underlying water (UW), were more pronounced during high wind speed conditions in samples collected by GP and DS. GP samples had lower biological matter enrichment than DS samples compared with UW. The depletion of biological matter in GP samples were more apparent during periods of high chl-a concentrations in the SML. In contrast, PC was able to consistently sample an SML community distinct from that of the UW, regardless of wind conditions. Bacterial community DNA samples obtained by the three SML samplers showed relatively consistent patterns of community structure, despite large fluctuations between seasons (summer vs. winter) and layers (SML vs. UW) being observed. Although no SML-specific taxon was detected in this study, a comparison of the representation of taxonomic groups in each sample suggested that certain taxa (15 orders) were specifically enriched or depleted in the SML, especially taxa belonging to Actinobacteria, Cyanobacteria, Deferribacteria, and Proteobacteria. This trend was consistent regardless of sampling method, implying that these bacterial groups are key taxa in the biogeochemical processes occurring at the air-sea interface.

Current Research on Polyelectrolyte Nanostructures: From Molecular Interactions to Biomedical Applications

Polyelectrolytes have been at the center of interdisciplinary research for many decades. In the field of polymer science and soft matter, they have provided the dimensions of electrostatic interactions, which opens a vast variety of opportunities for new physical properties and applications. In biological matter, polyelectrolytes are present in many forms, from extracellular polysaccharides to complex DNA molecules and proteins. This review discusses the recent research on polyelectrolytes covering the fundamental level of their conformations and nanostructures, their molecular interactions with materials that have close relevance to bioapplications and their applications in the biomedical field. This approach is motivated by the fact that the polyelectrolyte research is constantly active in all the aforementioned levels and continually affects many critical scientific areas.