Detection and Characterization of QoI-Resistant Phytophthora cactorum and P. nicotianae Causing Leather Rot in Florida Strawberry

Phytophthora cactorum and P. nicotianae cause leather rot (LR) of fruit and Phytophthora crown rot (PhCR) in strawberry. LR occurs sporadically but can cause up to 70% fruit loss when weather is conducive. In Florida's annual strawberry winter production system, PhCR can be severe, resulting in plant stunting, mortality, and severe yield loss. Currently, azoxystrobin is labeled for control of LR but not for PhCR. The aims of this research were i) to determine the sensitivity of P. cactorum and P. nicotianae isolates from strawberry to azoxystrobin and ii) to investigate mechanisms of QoI-resistance present in P. cactorum and P. nicotianae based on the known point mutations within the cytb gene. Isolates of both Phytophthora spp. causing LR and PhCR were collected from multiple strawberry fields in Florida between 1997 and 2020. Isolates were tested for sensitivity to azoxystrobin at 0, 0.01, 0.1, 1.0, 10, and 50 µg/ml on potato dextrose agar (PDA) amended with SHAM (100 µg/ml). Isolates were separated into two groups, sensitive isolates, with the 50% effective concentration (EC50) values lower than 1.0 µg/ml, and resistant isolates having EC50 values higher than 50 µg/ml. P. cactorum and P. nicotianae resistance to azoxystrobin was found for isolates collected after 2010. The first 450 nucleotides of the mitochondrial cytochrome b (cytb) gene were sequenced from a selection of resistant and sensitive isolates of both species. The G143A mutation reported to confer resistance to azoxystrobin was found in all resistant P. cactorum isolates. However, in P. nicotianae, qualitative resistance was observed, but the isolates lacked all the known mutations in the cytb gene. This is the first report of resistance to azoxystrobin in P. cactorum and P. nicotianae.

Advances in breeding techniques for durable Septoria tritici blotch (STB) resistance in cereals

Septoria tritici blotch (STB), caused by the hemibiotrophic fungus Zymoseptoria tritici, is one of the most important foliar diseases of winter cereal crops. Recent advances are helping to understand the genetic basis and architecture of resistance to STB. To date, at least 22 genes for qualitative resistance and over 200 quantitative trait loci (QTL) for quantitative resistance have been identified in cereals. This knowledge is enabling cereal breeding programs to develop varieties with more durable resistance to STB. This chapter reviews recent research on genetic resistance loci and breeding strategies based on both conventional and biotechnology-based breeding approaches (molecular marker/genomic-assisted breeding, genetic transformation, and gene-editing) to achieve achieving durable resistance to STB infection and minimise grain yield losses.

Cross-continental experimental infections reveal distinct defence mechanisms in populations of the three-spined stickleback Gasterosteus aculeatus

Epidemiological traits of host–parasite associations depend on the effects of the host, the parasite and their interaction. Parasites evolve mechanisms to infect and exploit their hosts, whereas hosts evolve mechanisms to prevent infection and limit detrimental effects. The reasons why and how these traits differ across populations still remain unclear. Using experimental cross-infection of three-spined stickleback Gasterosteus aculeatus and their species-specific cestode parasites Schistocephalus solidus from Alaskan and European populations, we disentangled host, parasite and interaction effects on epidemiological traits at different geographical scales. We hypothesized that host and parasite main effects would dominate both within and across continents, although interaction effects would show geographical variation of natural selection within and across continents. We found that mechanisms preventing infection (qualitative resistance) occurred only in a combination of hosts and parasites from different continents, while mechanisms limiting parasite burden (quantitative resistance) and reducing detrimental effects of infection (tolerance) were host-population specific. We conclude that evolution favours distinct defence mechanisms on different geographical scales and that it is important to distinguish concepts of qualitative resistance, quantitative resistance and tolerance in studies of macroparasite infections.

Assessment of physiological races of Exserohilum turcicum isolates from maize in Argentina and Brazil

Northern corn leaf blight (NCLB) is one of the most important diseases in maize worldwide. It is caused by the fungus Exserohilum turcicum, which exhibits a high genetic variability for virulence, and hence physiological races have been reported. Disease control is based mainly on fungicide application and host resistance. Qualitative resistance has been widely used to control NCLB through the deployment of Ht genes. Known pathogen races are designated according to their virulence to the corresponding Ht gene. Knowledge about of E. turcicum race distribution in maize-producing areas is essential to develop and exploit resistant genotypes. Maize leaves showing distinct elliptical grey-green lesions were collected from maize-producing areas of Argentina and Brazil, and 184 monosporic E. turcicum isolates were obtained. A total of 66 isolates were collected from Argentina during 2015, 2018 and 2019, while 118 isolates from Brazil were collected during 2017, 2018 and 2019. All isolates were screened on maize differential lines containing Ht1, Ht2, Ht3 and Htn1 resistance genes. In greenhouse experiments, inoculated maize plants were evaluated at 14 days after inoculation. Resistance reaction was characterized by chlorosis, and susceptibility was defined by necrosis in the absence of chlorosis. The most frequent race was 0 in both Argentina (83%) and Brazil (65%). Frequencies of race 1 (6% and 24%) and race 23N (5% and 10%) were very low in Argentina and Brazil, respectively. The high frequency of race 0 isolates provides evidence that qualitative resistance based on the tested Ht genes is not being used extensively in Argentina and Brazil to control NCLB. This information may be relevant for growers and breeding programs as the incidence of NCLB is increasing in both countries.

Phlox Species Show Quantitative and Qualitative Resistance to a Population of Powdery Mildew Isolates from the Eastern United States

Ornamental plants in the genus Phlox are extensively planted in landscapes and home gardens around the world. A major limitation to a more widespread use of these plants is their susceptibility to powdery mildew (PM). In this study, we used multilocus sequence typing (MLST) analysis to gain insights into the population diversity of 32 Phlox PM pathogen (Golovinomyces magnicellulatus and Podosphaera sp.) isolates collected from the eastern United States and relate it to the ability to overcome host resistance. Low genetic diversity and a lack of structure were found within our population. Whole genome comparison of two isolates was used to support low genetic diversity evidence found with the MLST analysis. Recombination was suggested by the incongruences observed in the six phylogenetic trees generated from the housekeeping genes TEF-1α, CSI, ITS, IGS, H3, and TUB. Contrasting with low genetic diversity, we found high phenotypic diversity when using 10 of the 32 isolates to evaluate host resistance in four different Phlox species (P. paniculata ‘Dunbar Creek’, P. amoena OPGC 3598, P. glaberrima OPGC 3594, and P. subulata OPGC 4185) using in vitro bioassays. We observed quantitative and qualitative resistance in all Phlox species and a consistent low disease severity in our control, P. paniculata ‘Dunbar Creek’. Taken together, the results generated in this study constitute a robust screening of popular Phlox germplasm that can be incorporated into breeding programs for PM resistance and provides significant information on the evolution of PM pathogens.

Electrochemical Analysis of Some Biodegradable Mg-Ca-Mn Alloys

The potential benefits of magnesium (Mg) over the other non-resorbable biomaterials, especially for orthopedic applications, are obvious. When fully realized, functional bioresorbable implants based on Mg alloys offer the mechanical advantages of a metal combined with the degradable and biological advantages of polymers and biomaterials. <1>In this article we obtained aMg-based prelate alloyed with Ca and Mn. It is known that Mn helps to refine the alloy’s microstructure, which adds to the elasticity of the material. Surface morphology was performed using the optical microscope and the electron microscope while the mechanical tests were performed using the tribometer. Also, the electrochemical tests were executed in the ringer solution. It has been mentioned that the electrochemical resistance is quite low. This study was conducted to determine the corrosion resistance of Mg-Ca-Mn alloys. It has been demonstrated that the addition of Mn refines the microstructure, increases the modulus of elasticity but does not have a qualitative resistance to corrosion.Also, the hardness of the material is quite low in comparison to other pre-alloys of Mg. Keywords: Surface morphology,mechanical tests, electrochemical tests

Qualitative Resistance of Sarawak Rice Landraces Against Pyricularia oryzae

Malaysia rice production is threatened by rice blast disease, caused by Pyricularia oryzae. Yield can be greatly reduced by this disease as it can attack all the aerial parts of rice including leaves, node, neck, and collar. The use of resistant cultivar, which can be produced from resistance breeding, can control the disease effectively. Sarawak, in Malaysian Borneo, has diverse rice landraces, which can be genetic resources for resistance breeding. Study on the resistance of Sarawak rice landraces against P. oryzae, is still limited. In this study, diseased leaf samples were collected from rice fields in Serian division, Sarawak. One isolate was successfully obtained and designated as B2PG. The morphological characteristics were documented. Six Sarawak rice landraces were challenged with isolate B2PG. Four of the rice landraces were resistant and might carry resistance gene(s), which can be utilised in future breeding program.

Virus epidemics, plant-controlled population bottlenecks and the durability of plant resistance

Plant qualitative resistances to viruses are natural exhaustible resources that can be impaired by the emergence of resistance-breaking (RB) virus variants. Mathematical modelling can help determine optimal strategies for resistance durability by a rational deployment of resistance in agroecosystems. Here, we propose an innovative approach, built up from our previous empirical studies, based on plant cultivars combining qualitative resistance with quantitative resistance narrowing population bottlenecks exerted on viruses during host-to-host transmission and/or within-host infection. Narrow bottlenecks are expected to slow down virus adaptation to plant qualitative resistance. To study the effect of bottleneck size on yield, we developed a stochastic epidemic model with mixtures of susceptible and resistant plants, relying on continuous-time Markov chain processes. Overall, narrow bottlenecks are beneficial when the fitness cost of RB virus variants in susceptible plants is intermediate. In such cases, they could provide up to 95 additional percentage points of yield compared with deploying a qualitative resistance alone. As we have shown in previous works that virus population bottlenecks are at least partly heritable plant traits, our results suggest that breeding and deploying plant varieties exposing virus populations to narrowed bottlenecks will increase yield and delay the emergence of RB variants. This article is part of the theme issue ‘Modelling infectious disease outbreaks in humans, animals and plants: approaches and important themes’. This issue is linked with the subsequent theme issue ‘Modelling infectious disease outbreaks in humans, animals and plants: epidemic forecasting and control’.

Crop domestication and pathogen virulence: Interactions of tomato and Botrytis genetic diversity

Human selection during crop domestication alters numerous traits, including disease resistance. Studies of qualitative resistance to specialist pathogens typically find decreased resistance in domesticated crops in comparison to their wild relatives. However, less is known about how crop domestication affects quantitative interactions with generalist pathogens. To study how crop domestication impacts plant resistance to generalist pathogens, and correspondingly how this interacts with the pathogen’s genetics, we infected a collection of wild and domesticated tomato accessions with a genetically diverse population of the generalist pathogen Botrytis cinerea. We quantified variation in lesion size of 97 B. cinerea genotypes (isolates) on 6 domesticated Solanum lycopersicum and 6 wild S. pimpinellifolium genotypes. This showed that lesion size was significantly controlled by plant domestication, plant genetic variation, and the pathogen’s genotype. Overall, resistance was slightly elevated in the wild germplasm in comparison to domesticated tomato accessions. Genome-wide association (GWA) mapping in B. cinerea identified a highly polygenic collection of genes. This suggests that breeding against this pathogen would need to utilize a diversity of isolates to capture all possible mechanisms. Critically, we identified a discrete subset of B. cinerea genes where the allelic variation was linked to altered virulence against the wild versus domesticated tomato accessions. This indicates that this generalist pathogen already has the necessary allelic variation in place to handle the introgression of wild resistance mechanisms into the domesticated crop. Future studies are needed to assess how these observations extend to other domesticated crops and other generalist pathogens.