A Laminarin-Based Formulation Protects Wheat Against Zymoseptoria tritici Via Direct Antifungal Activity and Elicitation of Host Defense-Related Genes

The present study aimed to evaluate the potential of the laminarin-based formulation Vacciplant® to protect and induce resistance in wheat against Zymoseptoria tritici, a major pathogen on this crop. Under greenhouse conditions, a single foliar spraying of the product two days before inoculation with Z. tritici reduced disease severity and pycnidium density by 42% and 45%, respectively. Vacciplant® exhibited a direct antifungal activity on Z. tritici conidial germination both in vitro and in planta. Moreover, it reduced in planta substomatal colonization as well as pycnidium formation on treated leaves. Molecular investigations revealed that Vacciplant® elicits but did not prime the expression of several wheat genes related to defense pathways, including phenylpropanoids (phenylalanine ammonia-lyase and chalcone synthase), octadecanoids (lipoxygenase and allene oxide synthase), and pathogenesis‐related proteins (β‐1,3‐endoglucanase and chitinase). By contrast, it did not modulate the expression of oxalate oxidase gene involved in the reactive oxygen species metabolism. UHPLC-MS analysis indicated limited changes in leaf metabolome after product application in both non-inoculated and inoculated conditions, suggesting a low metabolic cost associated with induction of plant resistance. This study provides evidence that the laminarin-based formulation confers protection to wheat against Z. tritici through direct antifungal activity and elicitation of plant defense-associated genes.

Resistance of the Wheat Cultivar ‘Renan’ to Septoria Leaf Blotch Explained by a Combination of Strain Specific and Strain Non-Specific QTL Mapped on an Ultra-Dense Genetic Map

Quantitative resistance is considered more durable than qualitative resistance as it does not involve major resistance genes that can be easily overcome by pathogen populations, but rather a combination of genes with a lower individual effect. This durability means that quantitative resistance could be an interesting tool for breeding crops that would not systematically require phytosanitary products. Quantitative resistance has yet to reveal all of its intricacies. Here, we delve into the case of the wheat/Septoria tritici blotch (STB) pathosystem. Using a population resulting from a cross between French cultivar Renan, generally resistant to STB, and Chinese Spring, a cultivar susceptible to the disease, we built an ultra-dense genetic map that carries 148,820 single nucleotide polymorphism (SNP) markers. Phenotyping the interaction was done with two different Zymoseptoria tritici strains with contrasted pathogenicities on Renan. A linkage analysis led to the detection of three quantitative trait loci (QTL) related to resistance in Renan. These QTL, on chromosomes 7B, 1D, and 5D, present with an interesting diversity as that on 7B was detected with both fungal strains, while those on 1D and 5D were strain-specific. The resistance on 7B was located in the region of Stb8 and the resistance on 1D colocalized with Stb19. However, the resistance on 5D was new, so further designated Stb20q. Several wall-associated kinases (WAK), nucleotide-binding and leucine-rich repeats (NB-LRR) type, and kinase domain carrying genes were present in the QTL regions, and some of them were expressed during the infection. These results advocate for a role of Stb genes in quantitative resistance and for resistance in the wheat/STB pathosystem being as a whole quantitative and polygenic.

Isolation and Identification of Lipopeptide-Producing Bacillus velezensis Strains from Wheat Phyllosphere with Antifungal Activity against the Wheat Pathogen Zymoseptoria tritici

Septoria tritici blotch, caused by the fungal pathogen Zymoseptoria tritici, is a highly significant disease on wheat crops worldwide. The objective of the present study was to find out new bacterial strains with bio-antimicrobial activity against Z. tritici. Two phyllospheric bacteria (S1 and S6) were isolated from wheat ears and identified as Bacillus velezensis strains according to 16S rRNA Sanger sequencing. Antagonistic assays performed with either living strains or cell-free culture filtrates showed significant in vitro antifungal activities against Z. tritici. For the culture filtrates, the half-maximal inhibitory dilution and the minimal inhibitory dilution were 1.4% and 3.7% for the strain S1, and 7.4% and 15% for the strain S6, respectively. MALDI—ToF analysis revealed that both strains synthesize cyclic lipopeptides but from different families. Interestingly, only strain S1 produces putative bacillomycin D. Such differential lipopeptide production patterns might explain the difference observed between the antifungal activity of the culture filtrates of the two strains. This study allows the identification of new lipopeptide-producing strains of B. velezensis with a high potential of application for the biocontrol of Z. tritici.

Winter wheat septoria blotch (Zymoseptoria tritici) (literature review)

In the Southern Federal District, winter wheat is a main food crop. One of the most important factors that can destabilize gross grain yields and reduce grain crop productivity are parasitic organisms. One of the most common wheat diseases is septoria blotch (Zymoseptoria tritici). The purpose of the current study was to analyze the biological cycle of distribution, harmfulness, measures to combat septoria blotch on winter wheat. The paper has considered the importance of winter wheat septoria disease in various countries and in Russia. There was noted a leading position in distribution and harmfulness of the disease, and according to the results of study conducted by Russian and foreign researchers, it was found that this pathogen was inferior in importance only to wheat rust. There were presented three types of septoria blotch pathogens and there was established a dominant type in the Southern Federal District. Yield losses caused by septoria blotch can reach upto 30-40%, and the optimal temperature for its development and spread is from 5 to 20°C, with frequent precipitation. There have been given the technological methods under which the crop damage by pathogens increased. There have been presented the measures to combat septoria blotch and there has been described the most effective, economical and environmentally friendly method, namely the development of resistant varieties and their introduction into production. There has been considered qualitative and quantitative resistance of varieties. Currently there have been identified 21 major septoria blotch resistance genes. There has been considered longevity of stb-genes and the reasons for its loss. It has been established that the development of winter wheat varieties resistant to septoria blotch is a priority issue of breeding, since this control measure reduces yield losses and potential reserve of the pathogen in the agrocenosis.

Characterization of Zymoseptoria tritici populations in Belarus by morphologic and cultural features

Septoria leaf blotch caused by Zymoseptoria tritici is one of the most harmful diseases in Belarus. Isolates of the pathogen were obtained from northern, central and southern populations: in 2018–2019, whichvaried significantly among in the structure of colonies. The rate of fungal isolates forming yeast-like colonies decreased from 55.0 % in the North of Belarus to 6.7 % in the South, whereas incidence of filamentous isolates increased from 31.3 % to 80.0 %, respectively. In the northern population, phenotypic diversity was high, while in the southern population it was the lowest (Shannon’s index was 1.53 and 1.14, respectively).

SNP-based Genetic Structure of Tunisian Durum Wheat Landraces and Distribution of the Resistance to Septoria Tritici Blotch

Background: Septoria tritici blotch (STB) has marked durum wheat production worldwide. This fungal disease is until today a challenge for farmers, researchers and breeders all united in the aim of reducing its damage and improving wheat resistance. Tunisian durum wheat landraces were reported to be valuable genetic resources for resistance to biotic and abiotic stresses and are therefore prominently deployed in breeding programs to develop new varieties adapted to fungal diseases as STB and to climate change constraints overall.Results: A total of 366 local durum wheat accessions were assessed for resistance to two virulent Tunisian isolates of Zymoseptoria tritici Tun06 and TM220 under field conditions. Population structure analysis of the durum wheat accessions, performed with 286 polymorphic SNPs (PIC >0.3) covering the entire genome, identified three genetic subpopulations (GS1, GS2 and GS3) with 22% of admixed genotypes. Interestingly, all of the resistant genotypes were among GS2 or admixed with GS2. Conclusions: This study revealed the population structure and the genetic distribution of the resistance to Z. tritici in the Tunisian durum wheat landraces. The grouping pattern of accessions appear to be associated, to some extent, with the geographical pattern of the landraces. We suggested that GS2 accessions were mostly introduced from eastern Mediterranean populations, unlike GS1 and GS3 that originated from the west. Resistant GS2 accessions belonged to landraces Taganrog, Sbei glabre, Richi, Mekki, Badri, Jneh Khotifa and Azizi. Furthermore, we suggested that admixture contributed to transmit STB resistance from GS2 resistant landraces to initially susceptible landraces such as Mahmoudi (GS1), but also resulted in the loss of resistance in the case of GS2 suscpetible Azizi and Jneh Khotifa accessions.

Enhancing septoria leaf blotch forecasts in winter wheat II: model architecture and validation results

In precision agriculture, pesticides and other inputs shall be used precisely when (and where) they are needed. European Directive 2009/128/EC calls for respecting the principles of integrated pest management (IPM) in the member states. To clarify the question, when, for instance, fungicide use is needed, the well-established economic principle of IPM may be used. This principle says that pests shall be controlled when the costs of control correspond with the damage the pests will cause. Disease levels corresponding with the costs of control are referred to as control thresholds in IPM. Several models have been developed in plant pathology to predict when epidemics will occur, but hardly any of these models predicts a control threshold directly limiting their usefulness for answering the question when pest control is needed according to the principles of IPM. Previously, we quantified the temporal distance between critical rainfall periods and the breaking of the control threshold of Zymoseptoria tritici on winter wheat as being affected by temperature, based on data from 52 field experiments carried out in Luxembourg from 2005 to 2016. This knowledge was used to construct the ShIFT (SeptorIa ForecasT, https://shift.list.lu/) model, which has been validated using external data recorded between 2017 and 2019. Within the efficacy period of a systemic fungicide, the model allowed correct predictions in 84.6% of the cases, while 15.4% of the cases were predicted falsely. The average deviation between the observed and predicted dates of epidemic outbreaks was 0.62 ± 2.4 days with a maximum deviation of 19 days. The observed and predicted dates were closely correlated (r = 0.92, P < 0.0001). Apart from outliers, the forecast model tested here was reliable within the period of efficacy of current commercial fungicides.

SNP-Based Genetic Structure of Tunisian Durum Wheat Landraces and Distribution of the Resistance to Septoria Tritici Blotch

Background: Septoria tritici blotch (STB) has marked durum wheat production worldwide. This fungal disease is until today a challenge for farmers, researchers and breeders all united in the aim of reducing its damage and improving wheat resistance. Tunisian durum wheat landraces were reported to be valuable genetic resources for resistance to biotic and abiotic stresses and are therefore prominently deployed in breeding programs to develop new varieties adapted to fungal diseases as STB and to climate change constraints overall.Results: A total of 366 local durum wheat accessions were assessed for resistance to two virulent Tunisian isolates of Zymoseptoria tritici Tun06 and TM220 under field conditions. Population structure analysis of the durum wheat accessions, performed with 286 polymorphic SNPs (PIC >0.3) covering the entire genome, identified three genetic subpopulations (GS1, GS2 and GS3) with 22% of admixed genotypes. Interestingly, all of the resistant genotypes were among GS2 or admixed with GS2. Conclusions: This study revealed the population structure and the genetic distribution of the resistance to Z. tritici in the Tunisian durum wheat landraces. The grouping pattern of accessions appear to be associated, to some extent, with the geographical pattern of the landraces. We suggested that GS2 accessions were mostly introduced from eastern Mediterranean populations, unlike GS1 and GS3 that originated from the west. Resistant GS2 accessions belonged to landraces Taganrog, Sbei glabre, Richi, Mekki, Badri, Jneh Khotifa and Azizi. Furthermore, we suggested that admixture contributed to transmit STB resistance from GS2 resistant landraces to initially susceptible landraces such as Mahmoudi (GS1), but also resulted in the loss of resistance in the case of GS2 suscpetible Azizi and Jneh Khotifa accessions.