Cause of Death: Phytophthora or Flood? Effects of Waterlogging on Phytophthora medicaginis and Resistance of Chickpea (Cicer arietinum)

Chickpea production in Australia is constrained by both waterlogging and the root disease Phytophthora root rot (PRR). Soil saturation is an important pre-condition for significant disease development for many soil-borne Phytophthora spp. In wet years, water can pool in low lying areas within a field, resulting in waterlogging, which, in the presence of PRR, can result in a significant yield loss for Australian chickpea varieties. In these circumstances, the specific cause of death is often difficult to discern, as the damage is rapid and the spread of PRR can be explosive in nature. The present study describes the impact of soil waterlogging on oxygen availability and the ability of P. medicaginis to infect chickpea plants. Late waterlogging in combination with PRR reduced the total plant biomass by an average of 94%; however, waterlogging alone accounted for 88% of this loss across three reference genotypes. Additional experiments found that under hypoxic conditions associated with waterlogging, P. medicaganis did not proliferate as determined by zoospore counts and DNA detection using qPCR. Consequently, minimizing waterlogging damage through breeding and agronomic practices should be a key priority for integrated disease management, as waterlogging alone results in plant stunting, yield loss and a reduced resistance to PRR.

Identificación de aislados de Phytophthora spp. obtenidos de cultivos de cacao en Antioquia, Colombia

Con el objetivo de identificar las especies de Phytophthora asociadas a la mazorca negra y al cáncer del tallo del cacao en Antioquia, Colombia, se realizó la caracterización e identificación morfológica y molecular de 120 aislados de Phytophthora spp. obtenidos de mazorcas, tallos y muestras de suelo en 11 municipios de este departamento. Se evaluaron caracteres morfológicos en esporangios y clamidosporas, la formación de estructuras sexuales, el patrón y la tasa de crecimiento de las colonias y las temperaturas cardinales. La identificación molecular se llevó a cabo mediante PCR convencional con cebadores género-específicos y qPCR. Los 120 obtenidos se identificaron como Phytophthora, 119 como P. palmivora y la cepa CH6-3S no coincidió con ninguna especie de Phytophthora previamente reportada como patógena de cacao. Un modelo de escalamiento multidimensional basado en atributos morfológicos mostró una amplia diversidad en el tamaño y forma de los esporangios (ocho morfotipos); sin embargo, la variabilidad de los aislados fue baja (17 %) y los subgrupos formados no mostraron relación con las localidades, ni con el tipo de tejido de donde se obtuvieron.

Detection and Characterization of QoI-Resistant Phytophthora cactorum and P. nicotianae Causing Leather Rot in Florida Strawberry

Phytophthora cactorum and P. nicotianae cause leather rot (LR) of fruit and Phytophthora crown rot (PhCR) in strawberry. LR occurs sporadically but can cause up to 70% fruit loss when weather is conducive. In Florida's annual strawberry winter production system, PhCR can be severe, resulting in plant stunting, mortality, and severe yield loss. Currently, azoxystrobin is labeled for control of LR but not for PhCR. The aims of this research were i) to determine the sensitivity of P. cactorum and P. nicotianae isolates from strawberry to azoxystrobin and ii) to investigate mechanisms of QoI-resistance present in P. cactorum and P. nicotianae based on the known point mutations within the cytb gene. Isolates of both Phytophthora spp. causing LR and PhCR were collected from multiple strawberry fields in Florida between 1997 and 2020. Isolates were tested for sensitivity to azoxystrobin at 0, 0.01, 0.1, 1.0, 10, and 50 µg/ml on potato dextrose agar (PDA) amended with SHAM (100 µg/ml). Isolates were separated into two groups, sensitive isolates, with the 50% effective concentration (EC50) values lower than 1.0 µg/ml, and resistant isolates having EC50 values higher than 50 µg/ml. P. cactorum and P. nicotianae resistance to azoxystrobin was found for isolates collected after 2010. The first 450 nucleotides of the mitochondrial cytochrome b (cytb) gene were sequenced from a selection of resistant and sensitive isolates of both species. The G143A mutation reported to confer resistance to azoxystrobin was found in all resistant P. cactorum isolates. However, in P. nicotianae, qualitative resistance was observed, but the isolates lacked all the known mutations in the cytb gene. This is the first report of resistance to azoxystrobin in P. cactorum and P. nicotianae.

Phytophthora spp. associated with Appalachian oak forests and waterways in Pennsylvania, with P. abietivora as a pathogen of five native woody plant species.

To document the distribution of potentially harmful Phytophthora spp. within Pennsylvania (PA), the PA Department of Agriculture collected 89 plant, 137 soil, and 48 water samples at 64 forested sites from 2018 to 2020. In total, 231 Phytophthora strains were isolated using baiting assays and identified based on morphological characteristics and sequences of nuclear and mitochondrial loci. Twenty-one Phytophthora spp. in nine clades and one unidentified species were present. Phytophthora abietivora, a recently described clade 7a species, was recovered from diseased tissue of 10 native broadleaved plants and twice from soil from 12 locations. Phytophthora abietivora is most likely endemic to PA based on pathogenicity tests on six native plant species, intraspecific genetic diversity, wide distribution, and recoveries from Abies Mill. and Tsuga Carrière plantations dating back to 1989. Cardinal temperatures and morphological traits are provided for this species. Other taxa, in decreasing order of frequency, include P. chlamydospora, P. plurivora, P. pini, P. cinnamomi, P. xcambivora, P. irrigata, P. gonapodyides, P. cactorum, P. pseudosyringae, P. hydropathica, P. stricta, P. xstagnum, P. caryae, P. intercalaris, Phytophthora ‘bitahaiensis’, P. heveae, P. citrophthora, P. macilentosa, P. cryptogea, and P. riparia. Twelve species were associated with diseased plant tissues. This survey documented 53 new plant-Phytophthora associations and expanded the known distribution of some species.

Phytophthora spp.: Economic Plant Threats in Egypt

The potato crop is exposed to infection with many fungal diseases including late blight, caused by Phytophthora infestans. The control of late blight disease requires an integrated management approach represented in cultivation control, plant resistance, and fungicide control. The citrus plants are infected by Phytophthora nicotianae that is causing root rot disease in Egypt. Three species of Phytophthora responsible for infection of citrus plants; P. nicotianae, P. citrophthora, and P. palmivora. Other pathogens associate P. nicotianae and form complexes or coinfection that release different diseases for citrus plants such as gummosis, Phytophthora–Diaprepes complex (PDC), and Huanglongbing syndrome (HLBS).

“Shining a LAMP” (Loop-Mediated Isothermal Amplification) on the Molecular Detection of Phytopathogens Phytophthora spp. and Phytophthora cactorum in Strawberry Fields

Phytopathogenic microorganisms belonging to the genus Phytophthora have been recognized many times as causal agents of diseases that lower the yield of many plants important for agriculture. Meanwhile, Phytophthora cactorum causes crown rot and leather rot of berry fruits, mainly strawberries. However, widely-applied culture-based methods used for the detection of pathogens are time-consuming and often inaccurate. What is more, molecular techniques require costly equipment. Here we show a rapid and effective detection method for the aforementioned targets, deploying a simple molecular biology technique, Loop-Mediated Isothermal Amplification (LAMP). We optimized assays to amplify the translation elongation factor 1-α (EF1a) gene for two targets: Phytophthora spp. And Phytophthora cactorum. We optimized the LAMP on pure strains of the pathogens, isolated from organic plantations of strawberry, and successfully validated the assay on biological material from the environment including soil samples, rhizosphere, shoots and roots of strawberry, and with SYBR Green. Our results demonstrate that a simple and reliable molecular detection method, that requires only a thermoblock and simple DNA isolation kit, can be successfully applied to detect pathogens that are difficult to separate from the field. We anticipate our findings to be a starting point for developing easier and faster modifications of the isothermal detection methods and which can be applied directly in the plantation, in particular with the use of freeze-dried reagents and chemistry, allowing observation of the results with the naked eye.

Preliminary Findings of New Citrus Rootstocks Potentially Tolerant to Foot Rot Caused by Phytophthora

Phytophthora spp. are one the most common soil-borne pathogens in citrus crops, in which Phytophthoranicotianae and P. citrophthora are the most relevant species, causing disease problems worldwide, such as foot rot and gummosis of the trunk, branch canker, brown rot of fruit, feeder root rot in orchards, and seedling damping-off in nurseries. Phytophthora-tolerant citrus rootstocks are essential for its control and for the success of the citrus industry. The aim of this study was to determine the susceptibility of new citrus rootstocks with low HLB incidence to Phytophthora diseases. Thus, plants of several commercial and new citrus rootstocks originating in different breeding programs were inoculated with an isolate of P. nicotianae. Thirty days post inoculation (DPI), the damage of lesion length in stem was measured for each plant. These results displayed a different susceptibility response to the damage caused by P. nicotianae among the citrus rootstocks tested. Thus, eleven new citrus rootstocks (B11R3T25, B11R5T25, B11R5T49, B11R5T60, B11R5T64, N40R1T18, N40R1T19, N40R3T25, WGFT + 50-7, UFR-6, and CL-5146), which have not been previously studied against Phytophthora diseases, improved the tolerance effect of Carrizo citrange. Our findings provide useful information for citrus growers on rootstock selection to address incidence problems caused by Phytophthora spp.

Endophytic Microorganisms as an Alternative for the Biocontrol of Phytophthora spp.

The genus Phytophthora with more than 100 described species and 58 officially recognized, phylogenetically distributed in ten clades, are important pathogenic oomycete chromists that cause important diseases in agricultural crops, trees and forests worldwide. This genus is known as \"The Plant Destroyer” which causes great economic losses with costs between 2 and 7 billion dollars per year in agricultural systems and unquantifiable losses in natural ecosystems. The host plants of the genus Phytophthora can vary from a wide range in some species to only one host, however, the host plants of the new species are still being determined and therefore the range continues to expand, that makes control exceedingly difficult. Plant damage can range from alterations in roots, fruits, trunks, stems, foliage and crown to invasive processes in highly susceptible species. Considering the wide range of hosts and organs that can be affected by Phytophthora, the use of endophytic microorganisms for the biocontrol of this phytopathogen can be an alternative to avoid losses of both crops and forests worldwide. Endophytes are microorganisms that live inside plant tissues without causing disease under any circumstances. The fact that endophytic microorganisms are able to colonize an ecological niche similar to that of some plant pathogens qualifies them as potential biocontrol agents. This chapter describes the endophytic bacteria and fungi isolated from different plant species that have shown antagonistic activity against different species of Phytophthora, as well as the metabolites isolated from these microorganisms that have shown fungicide activity and other biocontrol strategies (enzyme production, siderophores, substrate competition, among others) against Phytophthora.

Control of cacao (Theobroma cacao) diseases in Santo Domingo de los Tsachilas, Ecuador

Introduction. Ecuador occupies the fourth place in cocoa exports with 293,487 tons per year, produced on 559,617 hectares. However, its yield per hectare is low mainly due to the presence of pathogens that affect the pods. Objective. To evaluates different methods of control of pathogens of the Theobroma cacao cv ‘CCN-51’ pod. Materials and methods. The work was carried out in Luz de America, Santo Domingo de los Tsachilas, Ecuador, between 2016 and 2017. The treatments were the result of the combination of cultural practices + two fungicides (Chlorothalonil and Pyraclostrobin) + one biofungicide Serenade® (Bacillus subtilis QST713), with and without fertilizers. In total, 16 treatments were evaluated with 3 replicates or blocks, installed in a commercial cocoa plantation cv ‘CCN-51’ and under a Randomized Complete Block Design (RCBD). Results. The use of fungicides (chemical and biological), decreased the incidence of moniliasis (Moniliophthora roreri), black pod rot (Phytophthora spp.), and cherelle wilt; but the application of fertilizers did not increase the effectiveness of these products. Treatment with only cultural practices did not decrease the final incidence of moniliasis, nor of brown rot, in contrast, the final incidence of cherelle wilt increased. The number of pods and the yield were not directly related and the highest yield of fermented and dry cocoa, corresponded to T9 [Cultural labors + Serenade® (0.2 kg ha-1) (every 15 days) + Fertilizer (0.3 kg ha-1) + Fertilizer (1 kg plant-1)], a treatment that also had the highest net income per hectare. Conclusion. Chemical and biological control can manage cocoa pods pathogens. The integration of both control methods allowed the cocoa producer to obtain greater income.