The Colonization of a Cold Spring Ecosystem by the Invasive Species Potamopyrgus Antipodarum (Gray, 1843) (Gastropoda: Tateidae) (Southern Poland)

Springs are unique aquatic environments that support specific biota, including endemic species and rare species listed in Red Lists. Due to their usually small size, springs are highly sensitive to disturbance. Many of them are threatened by aquifer depletion, contamination, surface-water diversion, livestock trampling, recreation, and invasive species. The aim of this study was to assess the colonization success of the invasive New Zealand mud snail (Potamopyrgus antipodarum) in a cold spring ecosystem in southern Poland. In Europe, this species has recently been added to the top “hundred worst” alien species due to its impact on invaded ecosystems. The study was carried out in two areas of the spring ecosystem—in the springhead and the springbrook—over a four-year period. Potamopyrus antipodarum dominated the benthic macroinvertebrate communities in both areas of the spring ecosystem. Nevertheless, its abundance in the springbrook was significantly greater, and increased noticeably during subsequent years compared to that in the springhead. The populations of P. antipodarum were exclusively composed of females. Smaller-sized New Zealand mudsnails were more abundant near the spring’s source than at the second site. The females at the springhead became fecund at sizes as small as 3.7 mm (the number of embryos was between 0 and 37), while at the springbrook, embryos were found in snails as small as 3.4 mm (the number of embryos was between 0 and 42). Our results suggest that the lower water temperature at the springhead may limit the population size of P. antipodarum, thus making its density too low to be able to affect the community structure of benthic macroinvertebrates, including the spring snail Bythinella cf. austriaca.

Unexpected Micro-Spatial Scale Genomic Diversity of the Bloom-Forming Cyanobacterium Aphanizomenon Gracile and its Phycosphere

Background: Genotypic diversity within cyanobacteria populations, partly driven by horizontal gene transfers, is a key factor of their colonization success, allowing them to cope with spatio-temporal fluctuations of the environmental conditions. By providing complementary functions, such as oxidative stress protection, heterotrophic bacteria composing phycospheres play also an essential role in cyanobacteria adaptation. Aphanizomenon gracile is a species of toxinogen cyanobacteria blooming worldwide with severe consequences for fresh and brackish water ecosystems. While marker heterogeneity surveys have shown that harmful cyanobacteria blooms were not clonal populations, the real extent of genetic and functional diversity within a population of freshwater cyanobacteria, including A. gracile , and their associated phycospheres remains unclear. Results: Here, comparative omics of four monoclonal strains of A. gracile isolated from a single drop of water reveals extensive heterogeneity of chemotypes and gene contents, despite constrained genome size and high similarity indices. These variations are remarkably associated with horizontal gene transfers (HGT) of biosynthetic gene clusters (BCG), and a novel siphophage infecting A. gracile displaying characteristics of temperate phages appears to participate to this genotypic diversification. In spite of high variability in heterotrophic taxa relative abundances, A. gracile phycospheres displayed an apparent functional redundancy implying biosynthesis of public goods. Conclusions: Altogether, these results suggest that a bloom would constitute a hot-spot for A. gracile genotype diversification driven by cyanophages, where losses and gains of BCGs compels cyanobacteria individuals to cooperate together and with heterotrophic bacteria in a black queen hypothesis compatible way.

Scale-dependent tipping points of bacterial colonization resistance

Bacteria are efficient colonizers of a wide range of secluded micro-habitats, such as soil pores, skin follicles, dental cavities or crypts in gut-like environments. Although numerous factors promoting or obstructing stable colonization have been identified, we currently lack systematic approaches to explore how population stability and resilience depend on the scale of the micro-habitat. Using a microfluidic device to grow bacteria in crypt-like incubation chambers of systematically varied lengths, we found that the incubation scale can sensitively tune bacterial colonization success and resistance against invaders. Small crypts are un-colonizable, intermediately sized crypts can stably support dilute populations, while beyond a second critical lengthscale, populations phase-separate into a dilute and a jammed region. We demonstrate that the jammed state confers extreme colonization resistance, even if the resident strain is suppressed by an antibiotic. Combined with a flexible biophysical model, we show that scale acts as an environmental filter that can be tuned via the competition between growth and collective cell motion. More broadly, our observations underscore that scale can profoundly bias experimental outcomes in microbial ecology. Systematic, flow-adjustable lengthscale variations may serve as a promising strategy to elucidate further scale-sensitive tipping points and to rationally modulate the stability and resilience of microbial colonizers.

A behavioral syndrome linking boldness and flexibility facilitates invasion success in sticklebacks

ABSTRACTFor a species to expand its range, it needs to be good at dispersing and also capable of exploiting resources and adapting to different environments. Therefore, behavioral and cognitive traits could play key roles in facilitating invasion success. Here, we show that dispersing sticklebacks are bold, while sticklebacks that have recently established in a new region are flexible. Moreover, boldness and flexibility are negatively correlated with one another at the individual, family and population levels. Multiple lines of evidence suggest that the divergence in boldness and flexibility is likely to be evolutionary in origin. If boldness is favored in invaders during the initial dispersal stage, while flexibility is favored in recent immigrants during the establishment stage, then the link between boldness and flexibility could generate positive correlations between successes during both dispersal and establishment, and therefore play a key role in facilitating colonization success in sticklebacks and other organisms.

Nasal Tissue Extraction Is Essential for Characterization of the Murine Upper Respiratory Tract Microbiota

ABSTRACT Respiratory infections are a leading cause of morbidity and mortality worldwide. Bacterial pathogens often colonize the upper respiratory tract (nose or mouth) prior to causing lower respiratory infections or invasive disease. Interactions within the upper respiratory tract between colonizing bacteria and the resident microbiota could contribute to colonization success and subsequent transmission. Human carriage studies have identified associations between pathogens such as Streptococcus pneumoniae and members of the resident microbiota, although few mechanisms of competition and cooperation have been identified and would be aided by the use of animal models. Little is known about the composition of the murine nasal microbiota; thus, we set out to improve assessment, including tissue sampling, composition, and comparison between mouse sources. Nasal washes were efficient in sampling the nasopharyngeal space but barely disrupted the nasal turbinates. Nasal tissue extraction increased the yield of cultivable bacterial compared to nasal washes, revealing distinct community compositions. Experimental pneumococcal colonization led to dominance by the colonizing pathogen in the nasopharynx and nasal turbinates, but the composition of the microbiota, and interactions with resident microbes, differed depending on the sampling method. Importantly, vendor source has a large impact on microbial composition. Bacterial interactions, including cooperation and colonization resistance, depend on the biogeography of the nose and should be considered during research design of experimental colonization with pathogens. IMPORTANCE The nasal microbiota is composed of species that play a role in the colonization success of pathogens, including Streptococcus pneumoniae and Staphylococcus aureus. Murine models provide the ability to explore disease pathogenesis, but little is known about the natural murine nasal microbiota. This study established techniques to allow the exploration of the bacterial members of the nasal microbiota. The mouse nasal microbiota included traditional respiratory bacteria, including Streptococcus, Staphylococcus, and Moraxella species. Analyses were affected by different sampling methods as well as the commercial source of the mice, which should be included in future research design of infectious disease research.

Biocontrol Traits Correlate With Resistance to Predation by Protists in Soil Pseudomonads

Root-colonizing bacteria can support plant growth and help fend off pathogens. It is clear that such bacteria benefit from plant-derived carbon, but it remains ambiguous why they invest in plant-beneficial traits. We suggest that selection via protist predation contributes to recruitment of plant-beneficial traits in rhizosphere bacteria. To this end, we examined the extent to which bacterial traits associated with pathogen inhibition coincide with resistance to protist predation. We investigated the resistance to predation of a collection of Pseudomonas spp. against a range of representative soil protists covering three eukaryotic supergroups. We then examined whether patterns of resistance to predation could be explained by functional traits related to plant growth promotion, disease suppression and root colonization success. We observed a strong correlation between resistance to predation and phytopathogen inhibition. In addition, our analysis highlighted an important contribution of lytic enzymes and motility traits to resist predation by protists. We conclude that the widespread occurrence of plant-protective traits in the rhizosphere microbiome may be driven by the evolutionary pressure for resistance against predation by protists. Protists may therefore act as microbiome regulators promoting native bacteria involved in plant protection against diseases.

Phenotypic plasticity, population structure and adaptation in a young weed species with a worldwide distribution

SummaryThe colonization success of a species depends on phenotypic plasticity, adaptive potential and population structure. Assessing their relative contributions during a colonization process is challenging, and a large-scale experiment had yet to be done. In this study, we attempted to tease apart their effects on the fitness of one of the most common plant on Earth, the shepherd’s purse (Capsella bursa-pastoris), a self-fertilizing and allopolyploid weed, with a worldwide distribution. The overarching goal is to eventually understand how the shepherd’s purse extensive distribution range was established so rapidly. To do so, we carried out three common gardens, located in Europe, Asia and North America, and measured several life-history traits on field-collected accessions belonging to three distinct genetic clusters (Middle East, Europe, and Asia). Our experiment showed that (i) the success of C. bursa-pastoris is mainly due to its high degree of phenotypic plasticity; and (ii), genetic cluster effect reflected a classic pattern observed in core vs marginal populations, with the Middle Eastern cluster (putative core population) outperforming the European and Asian clusters. This study therefore revealed, in a model species, different relative contributions of plasticity and adaptation to fitness, depending on the population and the time since colonization occurred.

Size-specific recolonization success by coral-dwelling damselfishes moderates resilience to habitat loss

Increasing degradation of coral reef ecosystems and specifically, loss of corals is causing significant and widespread declines in the abundance of coral reef fishes, but the proximate cause(s) of these declines are largely unknown. Here, we examine specific responses to host coral mortality for three species of coral-dwelling damselfishes (Dascyllus aruanus, D. reticulatus, and Pomacentrus moluccensis), explicitly testing whether these fishes can successfully move and recolonize nearby coral hosts. Responses of fishes to localized coral loss was studied during population irruptions of coral feeding crown-of-thorns starfish, where starfish consumed 29 (34%) out of 85 coral colonies, of which 25 (86%) were occupied by coral-dwelling damselfishes. Damselfishes were not tagged or individually recognizable, but changes in the colonization of different coral hosts was assessed by carefully assessing the number and size of fishes on every available coral colony. Most damselfishes (> 90%) vacated dead coral hosts within 5 days, and either disappeared entirely (presumed dead) or relocated to nearby coral hosts. Displaced fishes only ever colonized corals already occupied by other coral-dwelling damselfishes (mostly conspecifics) and colonization success was strongly size-dependent. Despite movement of damselfishes to surviving corals, the local abundance of coral-dependent damselfishes declined in approximate accordance with the proportional loss of coral habitat. These results suggest that even if alternative coral hosts are locally abundant, there are significant biological constraints on movement of coral-dwelling damselfishes and recolonization of alternative coral habitats, such that localized persistence of habitat patches during moderate or patchy disturbances do not necessarily provide resilience against overall habitat loss.

The biogeography of Streptomyces in New Zealand enabled by high-throughput sequencing of genus-specific rpoB amplicons

SummaryWe evaluated Streptomyces biogeography in soils along a 1,200 km latitudinal transect across New Zealand (NZ). Streptomyces diversity was examined using high-throughput sequencing of rpoB amplicons generated with a Streptomyces specific primer set. We detected 1,287 Streptomyces rpoB operational taxonomic units (OTUs) with 159 ± 92 (average ± s.d.) rpoB OTUs per site. Only 12% (n = 149) of these OTUs matched rpoB sequences from cultured specimens (99% nucleotide identity cutoff). Streptomyces phylogenetic diversity (Faith’s PD) was correlated with soil pH, mean annual temperature, and plant community richness (Spearman’s r: 0.77, 0.64, and −0.79, respectively; p < 0.05), but not with latitude. In addition, soil pH and plant community richness both explained significant variation in Streptomyces beta diversity. Streptomyces communities exhibited both high dissimilarity and strong dominance of one or a few species at each site. Taken together, these results suggest that dispersal limitation due to competitive interactions limits the colonization success of spores that relocate to new sites. Cultivated Streptomyces isolates represent a major source of clinically useful antibiotics, but only a small fraction of extant diversity within the genus have been identified and most species of Streptomyces have yet to be described.