The use of phospholipid fatty acids to determine microbial community structure

1996 ◽  
pp. 77-93 ◽  
Author(s):  
Robert H. Findlay
Keyword(s):  
Fatty Acids ◽  
Community Structure ◽  
Microbial Community ◽  
Microbial Community Structure ◽  
Phospholipid Fatty Acids

scholarly journals Performance and Microbial Community Structure of Anaerobic Membrane Bioreactor for Lipids-Rich Kitchen Waste Slurry Treatment: Mesophilic and Thermophilic Processes

Processes ◽  
2019 ◽  
Vol 7 (12) ◽  
pp. 879 ◽  
Author(s):  
Xiaolan Xiao ◽  
Wansheng Shi ◽  
Wenquan Ruan
Keyword(s):  
Fatty Acids ◽  
Community Structure ◽  
Microbial Community ◽  
Removal Efficiency ◽  
Microbial Community Structure ◽  
Membrane Bioreactor ◽  
Cod Removal ◽  
Kitchen Waste ◽  
Anaerobic Membrane Bioreactor ◽  
Increasing Temperature

The performance and microbial community structure for treating lipids-rich kitchen waste slurry in mesophilic Anaerobic Membrane Bioreactor (m-AnMBR) and thermophilic AnMBR (t-AnMBR) were compared in this study. Higher Organic Loading Rate (OLR) of 12 kg-COD/(m3·d), better Chemical Oxygen Demand (COD) removal efficiency over 98%, stronger stability with Volatile Fatty Acids (VFAs)/alkalinity below 0.04, higher flux with 18 L/(m2·h) and lower Long Chain Fatty Acids (LCFAs) concentration of 550 mg/L were obtained in the m-AnMBR. Directly increasing temperature from 39 to 55 °C resulted in a collapse of the t-AnMBR. Acclimation via gradually increasing temperature made the t-AnMBR run successfully with lower OLR and COD removal efficiency of 7.5 kg-COD/(m3·d) and 96%. An obvious discrepancy of microbial community structure was presented between the m-AnMBR and t-AnMBR via the 16S rRNA gene sequence analysis. The Methanomethylovorans and Methanoculleus were dominant in the t-AnMBR instead of Methanobacterium and Methanothrix in the m-AnMBR.

scholarly journals pH-Mediated Microbial and Metabolic Interactions in Fecal Enrichment Cultures

mSphere ◽  
2017 ◽  
Vol 2 (3) ◽  
Author(s):  
Zehra Esra Ilhan ◽  
Andrew K. Marcus ◽  
Dae-Wook Kang ◽  
Bruce E. Rittmann ◽  
Rosa Krajmalnik-Brown
Keyword(s):  
Fatty Acids ◽  
Community Structure ◽  
Microbial Community ◽  
Microbial Community Structure ◽  
Short Chain Fatty Acids ◽  
Human Gut ◽  
Fermentation Products ◽  
Metabolic Products ◽  
Metabolic Interactions

ABSTRACT The human gut is a dynamic environment in which microorganisms consistently interact with the host via their metabolic products. Some of the most important microbial metabolic products are fermentation products such as short-chain fatty acids. Production of these fermentation products and the prevalence of fermenting microbiota depend on pH, alkalinity, and available dietary sugars, but details about their metabolic interactions are unknown. Here, we show that, for in vitro conditions, pH was the strongest driver of microbial community structure and function and microbial and metabolic interactions among pH-sensitive fermentative species. The balance between bicarbonate alkalinity and formation of fatty acids by fermentation determined the pH, which controlled microbial community structure. Our results underscore the influence of pH balance on microbial function in diverse microbial ecosystems such as the human gut. pH and fermentable substrates impose selective pressures on gut microbial communities and their metabolisms. We evaluated the relative contributions of pH, alkalinity, and substrate on microbial community structure, metabolism, and functional interactions using triplicate batch cultures started from fecal slurry and incubated with an initial pH of 6.0, 6.5, or 6.9 and 10 mM glucose, fructose, or cellobiose as the carbon substrate. We analyzed 16S rRNA gene sequences and fermentation products. Microbial diversity was driven by both pH and substrate type. Due to insufficient alkalinity, a drop in pH from 6.0 to ~4.5 clustered pH 6.0 cultures together and distant from pH 6.5 and 6.9 cultures, which experienced only small pH drops. Cellobiose yielded more acidity than alkalinity due to the amount of fermentable carbon, which moved cellobiose pH 6.5 cultures away from other pH 6.5 cultures. The impact of pH on microbial community structure was reflected by fermentative metabolism. Lactate accumulation occurred in pH 6.0 cultures, whereas propionate and acetate accumulations were observed in pH 6.5 and 6.9 cultures and independently from the type of substrate provided. Finally, pH had an impact on the interactions between lactate-producing and -consuming communities. Lactate-producing Streptococcus dominated pH 6.0 cultures, and acetate- and propionate-producing Veillonella, Bacteroides, and Escherichia dominated the cultures started at pH 6.5 and 6.9. Acid inhibition on lactate-consuming species led to lactate accumulation. Our results provide insights into pH-derived changes in fermenting microbiota and metabolisms in the human gut. IMPORTANCE The human gut is a dynamic environment in which microorganisms consistently interact with the host via their metabolic products. Some of the most important microbial metabolic products are fermentation products such as short-chain fatty acids. Production of these fermentation products and the prevalence of fermenting microbiota depend on pH, alkalinity, and available dietary sugars, but details about their metabolic interactions are unknown. Here, we show that, for in vitro conditions, pH was the strongest driver of microbial community structure and function and microbial and metabolic interactions among pH-sensitive fermentative species. The balance between bicarbonate alkalinity and formation of fatty acids by fermentation determined the pH, which controlled microbial community structure. Our results underscore the influence of pH balance on microbial function in diverse microbial ecosystems such as the human gut.

scholarly journals Supplementary feeding of cattle-yak in the cold season alters rumen microbes, volatile fatty acids, and expression of SGLT1 in the rumen epithelium

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e11048
Author(s):  
Yuzhu Sha ◽  
Jiang Hu ◽  
Bingang Shi ◽  
Renqing Dingkao ◽  
Jiqing Wang ◽  
...  
Keyword(s):  
Fatty Acids ◽  
Community Structure ◽  
Microbial Community ◽  
Microbial Community Structure ◽  
Volatile Fatty Acids ◽  
Cold Season ◽  
Supplementary Feeding ◽  
Production Performance ◽  
Tibet Plateau ◽  
Qinghai Tibet Plateau

Cattle-yak, a hybrid offspring of yak (Bos grunniens) and cattle (Bos taurus), inhabit the Qinghai-Tibet Plateau at an altitude of more than 3,000 m and obtain nutrients predominantly through grazing on natural pastures. Severe shortages of pasture in the cold season leads to reductions in the weight and disease resistance of grazing cattle-yak, which then affects their production performance. This study aimed to investigate the effect of supplementary feeding during the cold season on the rumen microbial community of cattle-yak. Six cattle-yak (bulls) were randomly divided into two groups—“grazing + supplementary feeding” (G+S) (n = 3) and grazing (G) (n = 3)—and rumen microbial community structure (based on 16S rRNA sequencing), volatile fatty acids (VFAs), and ruminal epithelial sodium ion-dependent glucose transporter 1 (SGLT1) expression were assessed. There were significant differences in the flora of the two groups at various taxonomic classification levels. For example, Bacteroidetes, Rikenellaceae, and Rikenellaceae_RC9_gut_group were significantly higher in the G+S group than in the G group (P < 0.05), while Firmicutes and Christensenellaceae_R-7_group were significantly lower in the G+S group than in the G group (P < 0.05). Kyoto Encyclopedia of Genes and Genomes (KEGG) and Clusters of Orthologous Groups (COG) analyses revealed that functions related to carbohydrate metabolism and energy production were significantly enriched in the G+S group (P < 0.05). In addition, the concentration of total VFAs, along with concentrations of acetate, propionate, and butyrate, were significantly higher in the G+S group than in the G group (P < 0.05). Furthermore, SGLT1 expression in ruminal epithelial tissue was significantly lower in the G+S group (P < 0.01). Supplementary feeding of cattle-yak after grazing in the cold season altered the microbial community structure and VFA contents in the rumen of the animals, and decreased ruminal epithelial SGLT1 expression. This indicated that supplementary feeding after grazing aids rumen function, improves adaptability of cattle-yak to the harsh environment of the Qinghai-Tibet Plateau, and enhances ability of the animals to overwinter.

scholarly journals Vineyard management system affects soil microbiological properties

OENO One ◽  
2020 ◽  
Vol 54 (1) ◽  
Author(s):  
Sofia Di Giacinto ◽  
Matthias Friedel ◽  
Christian Poll ◽  
Johanna Döring ◽  
Robert Kunz ◽  
...  
Keyword(s):  
Fatty Acids ◽  
Community Structure ◽  
Microbial Community ◽  
Microbial Community Structure ◽  
Neutral Lipids ◽  
Soil Analysis ◽  
Soil Microbiology ◽  
Organic Systems ◽  
C And N

Aim: The aim of this study was to investigate the effects of integrated (INT), organic (ORG) and biodynamic (BD) management systems with similar C- and N-inputs on soil microbiology in a viticultural long-term field trial.Methods and results: Within the systems comparison, soil samples were taken 10 years after conversion, throughout the growing season. To gather information about microbial community structure, the activity of five soil enzymes was measured, and phospholipid fatty acids (PLFA) and neutral lipids fatty acids (NLFA) profiles were analysed accompanied by comprehensive soil analysis. pH associated with BD was significantly higher compared to INT soil. Copper and N-min values in INT were significantly lower compared to the organic systems. BD and ORG were characterised by a higher b-D-glucosidase and urease activity and a higher abundance of fungi and bacteria. INT had larger quantities of mycorrhizae indicator NLFAs.Significance and impact: Results from this study contribute to a better understanding of the microbial community structure and nutrient cycling under organic and biodynamic viticulture.

Impacts of long-term fertilization on the soil microbial communities in double-cropped paddy fields

2018 ◽  
Vol 156 (7) ◽  
pp. 857-864 ◽  
Author(s):  
H. M. Tang ◽  
Y. L. Xu ◽  
X. P. Xiao ◽  
C. Li ◽  
W. Y. Li ◽  
...  
Keyword(s):  
Fatty Acids ◽  
Community Structure ◽  
Microbial Community ◽  
Microbial Communities ◽  
Microbial Community Structure ◽  
Soil Microbial Communities ◽  
Chemical Fertilizer ◽  
Soil Microbial Community Structure ◽  
Soil Microbial

AbstractThe response of soil microbial communities to soil quality changes is a sensitive indicator of soil ecosystem health. The current work investigated soil microbial communities under different fertilization treatments in a 31-year experiment using the phospholipid fatty acid (PLFA) profile method. The experiment consisted of five fertilization treatments: without fertilizer input (CK), chemical fertilizer alone (MF), rice (Oryza sativaL.) straw residue and chemical fertilizer (RF), low manure rate and chemical fertilizer (LOM), and high manure rate and chemical fertilizer (HOM). Soil samples were collected from the plough layer and results indicated that the content of PLFAs were increased in all fertilization treatments compared with the control. The iC15:0 fatty acids increased significantly in MF treatment but decreased in RF, LOM and HOM, while aC15:0 fatty acids increased in these three treatments. Principal component (PC) analysis was conducted to determine factors defining soil microbial community structure using the 21 PLFAs detected in all treatments: the first and second PCs explained 89.8% of the total variance. All unsaturated and cyclopropyl PLFAs except C12:0 and C15:0 were highly weighted on the first PC. The first and second PC also explained 87.1% of the total variance among all fertilization treatments. There was no difference in the first and second PC between RF and HOM treatments. The results indicated that long-term combined application of straw residue or organic manure with chemical fertilizer practices improved soil microbial community structure more than the mineral fertilizer treatment in double-cropped paddy fields in Southern China.

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