Acidiferrobacter thiooxydans, gen. nov. sp. nov.; an acidophilic, thermo-tolerant, facultatively anaerobic iron- and sulfur-oxidizer of the family Ectothiorhodospiraceae

Extremophiles ◽  
2011 ◽  
Vol 15 (2) ◽  
pp. 271-279 ◽  
Author(s):  
Kevin B. Hallberg ◽  
Sabrina Hedrich ◽  
D. Barrie Johnson
Keyword(s):  
Facultatively Anaerobic ◽  
The Family ◽  
Sulfur Oxidizer

N2-fixing vibrios isolated from the gastrointestinal tract of sea urchins

1981 ◽  
Vol 27 (3) ◽  
pp. 311-317 ◽  
Author(s):  
M. L. Guerinot ◽  
D. G. Patriquin
Keyword(s):  
Gastrointestinal Tract ◽  
Sea Urchins ◽  
Anaerobic Bacteria ◽  
Strongylocentrotus Droebachiensis ◽  
Physiological Traits ◽  
Biochemical Characteristics ◽  
Facultatively Anaerobic ◽  
The Family ◽  
Vibrio Genus ◽  
Facultatively Anaerobic Bacteria

Facultatively anaerobic bacteria, capable of fixing N2 anaerobically or at low O2 concentrations, were isolated from the gastrointestinal tracts of temperate (Strongylocentrotus droebachiensis) and tropical (Tripneustes ventricosus) sea urchins. Morphological and biochemical characteristics, as well as the guanine plus cytosine content of their DNA (45.9 and 48.4 mol%), place these isolates in the genus Vibrio Pacini 1865 in the family Vibrionaceae. Members of this family have not previously been shown to fix N2. These isolates are not identical to any described species in the Vibrio genus and can be distinguished by a combination of biochemical and physiological traits.

16S rRNA and Multilocus Phylogenetic Analysis of the Iron Oxidizing Acidophiles of the Acidiferrobacteraceae Family

2017 ◽  
Vol 262 ◽  
pp. 339-343 ◽  
Author(s):  
Francisco Issotta ◽  
Paulo C. Covarrubias ◽  
Ana Moya-Beltrán ◽  
Sören Bellenberg ◽  
Christian Thyssen ◽  
...  
Keyword(s):  
Draft Genome ◽  
Phylogenetic Reconstruction ◽  
Taxonomic Status ◽  
Genomic Diversity ◽  
Evolutionary Information ◽  
Comparative Genomic ◽  
The Family ◽  
Sulfur Oxidizer ◽  
Acid Waters ◽  
Type Strains

The family Acidiferrobacteraceae (order Acidiferrobacterales) currently contains three genera of chemolithoautotrophs: Sulfuricaulis (2016), Sulfurifustis (2015) and Acidiferrobacter (2011). While the two former are neutrophilic sulfur oxidizers isolated from lake sediments in Japan, the latter is an extremely acidophilic, moderately osmophilic, thermotolerant iron/sulfur oxidizer known to occur in macroscopic streamers in Rio Tinto, Spain and in acid waters worldwide. The type strains of both Sulfuricaulis limnicola (HA5T) and Sulfurifustis variabilis (skN76T) have been sequenced, and the draft genome of the ZJ isolate of Acidiferrobacter thiooxydans (MDCF01) has recently been deposited in public databases. Despite this fact, little evidence on the genomic diversity and evolution of this group has been presented so far. Using comparative genomic analyses and phylogenetic reconstruction strategies, we explored the evolutionary information contained in the available genome sequences to shed light on the taxonomic status of a novel isolate of the genus Acidiferrobacter (SP-III/3; DSM 27195).

scholarly journals Aquipluma nitroreducens gen. nov. sp. nov., a novel facultatively anaerobic bacterium isolated from a freshwater lake

2020 ◽  
Vol 70 (12) ◽  
pp. 6408-6413 ◽  
Author(s):  
Miho Watanabe ◽  
Hisaya Kojima ◽  
Manabu Fukui
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Sequence Similarity ◽  
Freshwater Lake ◽  
Phenotypic Characterization ◽  
Rrna Gene ◽  
Content Type ◽  
Link Type ◽  
Facultatively Anaerobic ◽  
The Family

A novel facultatively anaerobic, nitrate-reducing bacterium, designated MeG22T, was isolated from a freshwater lake in Japan. Cells of the strain were straight rods (0.8×2.5–10 µm), motile, and Gram-stain-negative. For growth, the optimum NaCl concentration was 0 % and the optimum temperature was 30 °C. Under anoxic conditions, strain MeG22T reduced nitrate to nitrite. Major cellular fatty acids were C15 : 1 ω6c (13.6 %), C17 : 0 (11.9 %), anteiso-C15 : 0 (10.6 %) and iso-C15 : 0 (10.6 %). The major respiratory quinone was menaquinone-7. The genome sequence of strain MeG22T consists of 5 712 279 bp with a G+C content of 40.3 mol%. Phylogenetic analysis based on the 16S rRNA gene revealed that the novel strain belonged to the family Prolixibacteraceae within the phylum Bacteroidetes . The closest relative of strain MeG22T was Sunxiuqinia faeciviva strain JAM-BA0302T with a 16S rRNA gene sequence similarity of 90.9 %. On the basis of phylogenetic and phenotypic characterization, Aquipluma nitroreducens, gen. nov., sp. nov., belonging to the family Prolixibacteraceae is proposed with the type strain MeG22T (=NBRC 112896T=DSM 106262T).

scholarly journals Puteibacter caeruleilacunae gen. nov., sp. nov., a facultatively anaerobic bacterium isolated from Yongle Blue Hole in the South China Sea

2020 ◽  
Vol 70 (3) ◽  
pp. 1623-1629 ◽  
Author(s):  
Wen Sun ◽  
Tianyu Fu ◽  
Chao Jia ◽  
Liang Fu ◽  
Shun Zhou ◽  
...  
Keyword(s):  
South China Sea ◽  
South China ◽  
The South China Sea ◽  
The South ◽  
Content Type ◽  
China Sea ◽  
Link Type ◽  
Facultatively Anaerobic ◽  
Blue Hole ◽  
The Family

Blue holes are unique geomorphological units characterized by steep redox and biogeochemical gradients. Yongle Blue Hole is located on the largest atoll (Yongle Atoll) of the western Xisha Islands in the South China Sea. A Gram-stain-negative, facultatively anaerobic, non-motile, non-flagellated marine bacterium with creamy white colonies, designated JC036T, was isolated from Yongle Blue Hole. Cells were short-rod-shaped and catalase-negative. 16S rRNA gene sequence analysis showed that sequence similarities were lower than 91.6 % against all validly named species in the family Prolixibacteraceae ; a reconstructed phylogenetic tree indicated that strain JC036T formed a lineage with strains in the family Prolixibacteraceae . Growth occurred at 4–37 °C (optimum, 28 °C), at pH 5.0–9.0 (optimum, 7.0) and in the presence of 2–6 % (w/v) NaCl (optimum, 3 %). The prevalent isoprenoid quinone of strain JC036T was menaquinone-7 (MK-7). Iso-C15 : 0 and iso-C17 : 0 3-OH were the predominant fatty acids. The major polar lipids included a phospholipid, phosphatidylethanolamine, an aminophospholipid and four unidentified lipids. The genomic DNA G+C content of strain JC036T was 37.8 mol%. Based on physiological and biochemical characteristics and whole genome comparisons, we propose a new genus and species, Puteibacter caeruleilacunae gen. nov., sp. nov., within the family Prolixibacteraceae . The type strain of Puteibacter caeruleilacunae is JC036T (=JCM 33128T=MCCC 1K03579T). From this study, a deeper understanding of the community of the microorganism and their roles in biogeochemical cycles, especially anaerobic bacteria, is provided.

scholarly journals Roseimarinus sediminis gen. nov., sp. nov., a facultatively anaerobic bacterium isolated from coastal sediment

2015 ◽  
Vol 65 (Pt_7) ◽  
pp. 2260-2264 ◽  
Author(s):  
Wen-Jie Wu ◽  
Qian-Qian Liu ◽  
Guan-Jun Chen ◽  
Zong-Jun Du
Keyword(s):  
New Genus ◽  
Novel Species ◽  
Sequence Similarity ◽  
Rrna Gene ◽  
Gram Stain ◽  
16S Rrna Gene Sequences ◽  
Respiratory Quinone ◽  
Facultatively Anaerobic ◽  
The Family ◽  
Major Respiratory Quinone

A Gram-stain-negative, facultatively anaerobic, non-motile and pink-pigmented bacterium, designated strain HF08T, was isolated from marine sediment of the coast of Weihai, China. Cells were rod-shaped, and oxidase- and catalase-positive. The isolate grew optimally at 33 °C, at pH 7.5–8.0 and with 2–3 % (w/v) NaCl. The dominant cellular fatty acids were iso-C15 : 0, anteiso-C15 : 0 and iso-C14 : 0. Menaquinone 7 (MK-7) was the major respiratory quinone and the DNA G+C content was 44.8 mol%. Phylogenetic analysis based on 16S rRNA gene sequences revealed that the isolate was a member of the class Bacteroidia, and shared 88–90 % sequence similarity with the closest genera Sunxiuqinia, Prolixibacter, Draconibacterium, Mariniphaga and Meniscus. Based on the phylogenetic and phenotypic evidence presented, a novel species in a new genus of the family Prolixibacteraceae is proposed, with the name Roseimarinus sediminis gen. nov., sp. nov. The type strain of Roseimarinus sediminis is HF08T ( = KCTC 42261T = CICC 10901T).

scholarly journals Identification of Hafnia alvei with the MicroScan WalkAway System

1999 ◽  
Vol 37 (12) ◽  
pp. 4186-4188 ◽  
Author(s):  
L. A. Rodríguez ◽  
J. Vivas ◽  
C. S. Gallardo ◽  
F. Acosta ◽  
L. Barbeyto ◽  
...  
Keyword(s):  
Causative Agent ◽  
Identification System ◽  
Automated Identification ◽  
Gram Negative ◽  
Hafnia Alvei ◽  
Negative Type ◽  
Biochemical Methods ◽  
Facultatively Anaerobic ◽  
The Family ◽  
Microscan Walkaway

Hafnia alvei is a gram-negative facultatively anaerobic bacillus that belongs to the family Enterobacteriaceae. This organism is a causative agent of intestinal disorders and is found in different environments. H. alvei has received increased clinical attention as a cause of different infections in humans. This study was performed to compare the MicroScan WalkAway automated identification system in conjunction with the new MicroScan Combo Negative type 1S panels with conventional biochemical methods for identification of 21 H. alvei strains. The MicroScan WalkAway system was found capable of correctly identifying 20 of the 21 strains tested.

Triassic sponges (Sphinctozoa) from Hells Canyon, Oregon

1988 ◽  
Vol 62 (03) ◽  
pp. 419-423 ◽  
Author(s):  
Baba Senowbari-Daryan ◽  
George D. Stanley
Keyword(s):  
Endemic Species ◽  
Upper Triassic ◽  
Island Arc ◽  
Tropical Island ◽  
The Family ◽  
Wallowa Terrane ◽  
Unique Condition ◽  
Hells Canyon

Two Upper Triassic sphinctozoan sponges of the family Sebargasiidae were recovered from silicified residues collected in Hells Canyon, Oregon. These sponges areAmblysiphonellacf.A. steinmanni(Haas), known from the Tethys region, andColospongia whalenin. sp., an endemic species. The latter sponge was placed in the superfamily Porata by Seilacher (1962). The presence of well-preserved cribrate plates in this sponge, in addition to pores of the chamber walls, is a unique condition never before reported in any porate sphinctozoans. Aporate counterparts known primarily from the Triassic Alps have similar cribrate plates but lack the pores in the chamber walls. The sponges from Hells Canyon are associated with abundant bivalves and corals of marked Tethyan affinities and come from a displaced terrane known as the Wallowa Terrane. It was a tropical island arc, suspected to have paleogeographic relationships with Wrangellia; however, these sponges have not yet been found in any other Cordilleran terrane.

Sign in / Sign up

Export Citation Format

Share Document