Delayed methylation and the matrix bound DNA methylase

1985 ◽  
Vol 126 (2) ◽  
pp. 678-684 ◽  
Author(s):  
Terence Davis ◽  
David Kirk ◽  
Angela Rinaldi ◽  
Roy H. Burdon ◽  
Roger L.P. Adams
2005 ◽  
Vol 17 (2) ◽  
pp. 235 ◽  
Author(s):  
G. Cetinkaya ◽  
S. Arat ◽  
H. Odaman Mercan ◽  
M.A. Onur ◽  
A. Tumer

Murine embryonic stem cells derived from the inner cell mass of mouse blastocysts can be maintained in culture for extended periods by using feeder layers and leukemia inhibitory factor (LIF). Maintenance of undifferentiated status occurs via LIF-mediated signalling pathways. In this study we cultured embryonic stem (ES) cells in Knockout-DMEM with serum replacement on a three-dimensional matrix, non-woven polyester fabric (NWPF), which is formed from non-arrayed polyethylene teraphthalate fibers. The surface of the fibers was modified by immobilizing LIF. While stimulating the matrix-bound form of LIF in vitro, we also tried to induce LIF-mediated signalling pathways continually. Our goal was to constitute a synthetic microenvironment that would support the undifferentiated growth of murine ES cells. Experimental groups were examined according to colony morphology, alkaline phosphatase activity, SSEA-1 antibody immunoreactivity, and SEM analyses. It was shown that three dimensional macroporous fibrous matrix, NWPF could support growth of undifferentiated ES cells. However, the ratio of undifferentiated colonies was higher on feeder layers than an polymeric surfaces (93% on mouse embryonic fibroblasts; 63,7% on hydrolized polymeric surface, P < 0,05). Results showed that LIF-immobilized surfaces supported undifferentiated growth of ES cells better than hydrolyzed surfaces. Colonies cultured on LIF-immobilized surfaces, had higher alkaline phosphatase activity and undifferentiated phenotype ratio than those on hydrolyzed surfaces. When the soluble or the matrix-bound form of LIF was used, the number of undifferentiated colonies increased in the polymeric groups (77.8% soluble LIF; 81.6% matrix bound LIF P < 0,05). On NWPF discs, ES cells formed big cell aggregates which had high alkaline phosphatase activity but low SSEA-1 immunoreactivity . When they were passaged to feeder layers, SSEA-1 activity increased. We managed to obtain undifferentiated colonies on NWPF discs by using LIF but the skeletal structure of polymeric matrix would be more convenient for differentiation studies. This study was performed in TUBITAK-RIGEB and supported by a part of grant from Hacettepe University (0102601001).


Author(s):  
Andreas Loida ◽  
Bernd Grambow ◽  
Horst Geckeis

Abstract The simultaneous corrosion of spent fuel and Fe-based container material is characterized by the formation of large amounts of hydrogen, which control the composition of the gas phase. Various experimental data indicate that the matrix dissolution rate and the release rates of important radionuclides decrease, if the H2 overpressure increases. To quantify to what extent the hydrogen overpressure may counteract radiolysis enhanced matrix dissolution rates, and to take credit from the effect of hydrogen overpressure in long-term safety assessments of the repository, a detailed experimental investigation has been initiated. High burnup spent fuel is being corroded under anoxic conditions in the absence of carbonate in 5m NaCl solution under an external H2 overpressure of 3.3 bar. This pressure is in the same range as observed in a long-term test using spent fuel and Fe-powder. Results obtained after 117 days of testing show that due to constant or decreasing concentrations of Sr and other matrix bound radionuclides, corrosion rates were not measurable indicating a stop of matrix dissolution or very low long-term rates. Grain boundary release of Cs and fission gases was found to continue under hydrogen overpressure. Compared to tests in the absence of hydrogen solution concentrations decreased by about ca. 1.5 orders of magnitude for U (10−8 M), Am, Eu (10−10 M), whereas the decrease of Np (3×10−10 M), Tc (5×10−9 M) and Pu (4×10−9 M) concentrations was found to be less significant.


1991 ◽  
Vol 149 (3) ◽  
pp. 375-382 ◽  
Author(s):  
Herbert F. Upchurch ◽  
Eugene Conway ◽  
M. K. Patterson ◽  
Merle D. Maxwell

1973 ◽  
Vol 51 (9) ◽  
pp. 1240-1247 ◽  
Author(s):  
W. W.-C. Chan

A derivative containing matrix-bound (MB) subunits of aldolase was prepared by attaching native tetrameric aldolase to Sepharose to form MB-aldolase followed by dissociation with 6 M guanidinium chloride and renaturation. The interaction between the MB-subunit aldolase derivative so prepared and subunits added in solution was studied. Nascent subunits of aldolase were generated in situ by diluting a small aliquot of guanidinium chloride-denatured aldolase into a much larger volume of buffer containing a suspension of MB-subunit aldolase. This treatment caused a significant increase in the amount of bound activity. The ability of MB-subunit aldolase to pick up activity from solution is highly specific. After repeated treatments with nascent sub-units, the matrix-bound activity reached a saturation level close to four times the activity of MB-subunit aldolase. The product of this treatment is very similar in properties to the original MB-tetrameric aldolase but different from MB-subunit aldolase. These observations suggest that MB-subunit aldolase can associate with nascent subunits generated in solution to form MB-tetrameric aldolase. The results in this paper support the conclusion from the kinetics of renaturation (Chan et al. J. Biol. Chem. 248, 2778 (1973)) that aldolase monomers have the same activity whether they exist singly or as part of a tetrameric structure.


1972 ◽  
Vol 27 (9) ◽  
pp. 1063-1066 ◽  
Author(s):  
Jaap Visser ◽  
Louis Havekes ◽  
C. Veeger

Lipoamide dehydrogenase (EC 1.6.4.3) has been succesfully linked to a CNBr-activated polysaccharide matrix, Sepharose-4B, under different reaction conditions. The enzyme is probably bound more homogeneously at lower pH values (pH 7.5) than at pH 8.5. Such immobilized preparations yield V values 8-30% of the value of the V of the free enzyme (18,600 mole/min/mole of flavin). A low level of CNBr-activation in combination with substrate protection and a pH of 7.5 during the coupling reaction leads to the most active preparations. The Km values for both substrates increase considerably.The overall kinetic pattern of the matrix-bound enzyme preparations is not different from that of the free enzyme. Both activation by high concentration of lip (SH)2NH2 at low NAD+ levels and a stimulation of the V by increased phosphate concentration in the assay buffer is observed with free and some immobilized enzymes.


1978 ◽  
Vol 173 (1) ◽  
pp. 85-93 ◽  
Author(s):  
G F Bickerstaff ◽  
N C Price

Dimeric creatine kinase (EC 2.7.3.2) from rabbit skeletal muscle can be immobilized via a single subunit to CNBr-activated Sepharose 4B and subsequently treated with guanidine hydrochloride followed by renaturation to yield a catalytically active matrix-bound subunit derivative. The importance of the intact dimeric structure in the activation of the enzyme by acetate was demonstrated. Immobilization did not appear to alter the pH optimum of the enzyme, and the kinetic parameters fot the matrix-bound derivatives were generally similar to those for the soluble enzyme, but the matrix-bound derivatives showed higher thermal stability and greater resistance to denaturation than did the soluble enzyme. The rates of reaction of thiol groups of the matrix-bound derivatives with iodoacetamide in the absence and in the presence of combinations of substrates were similar to those of the soluble enzyme. Studies with 5,5′-dithiobis-(2-nitrobenzoic acid) and with iodoacetamide revealed the presence of an additional reactive thiol group in the matrix-bound subunit derivative, which is presumably masked in the dimeric derivatives.


1979 ◽  
Vol 57 (6) ◽  
pp. 834-842 ◽  
Author(s):  
Susan McCracken ◽  
Edward Meighen

Escherichia coli alkaline phosphatase has been reversibly immobilized on Sepharose CL-4B through two different methods, both based on a disulfide linkage, under conditions selected to favour the coupling of the enzyme to the solid support through one covalent linkage. The quaternary structure of the reversibly immobilized subunit, produced by dissociation of the matrix-bound dimer, was examined by cross-linking with the bifunctional reagent dimethyl suberimidate. Following release from the solid support, the protein was analysed by sodium dodecyl sulfate gel electrophoresis demonstrating the presence of a sufficient amount of dimeric structures in the immobilized subunit preparation to account for all the enzyme activity observed in this sample. These results suggest that the subunit of alkaline phosphatase may be catalytically inactive. This approach to studying the quaternary structure of immobilized subunit derivatives offers the opportunity to directly determine the homogeneity and structure of matrix-bound 'monomer' preparations and is particularly useful in determining if low levels of catalytic activity observed in some immobilized subunit populations are due to the presence of contaminating oligomeric structures.


2013 ◽  
Vol 202 (3) ◽  
pp. 453-462 ◽  
Author(s):  
Konstantinos Lefkimmiatis ◽  
Daniela Leronni ◽  
Aldebaran M. Hofer

Cyclic AMP (cAMP)-dependent phosphorylation has been reported to exert biological effects in both the mitochondrial matrix and outer mitochondrial membrane (OMM). However, the kinetics, targets, and effectors of the cAMP cascade in these organellar domains remain largely undefined. Here we used sensitive FRET-based sensors to monitor cAMP and protein kinase A (PKA) activity in different mitochondrial compartments in real time. We found that cytosolic cAMP did not enter the matrix, except during mitochondrial permeability transition. Bicarbonate treatment (expected to activate matrix-bound soluble adenylyl cyclase) increased intramitochondrial cAMP, but along with membrane-permeant cAMP analogues, failed to induce measureable matrix PKA activity. In contrast, the OMM proved to be a domain of exceptionally persistent cAMP-dependent PKA activity. Although cAMP signaling events measured on the OMM mirrored those of the cytosol, PKA phosphorylation at the OMM endured longer as a consequence of diminished control by local phosphatases. Our findings demonstrate that mitochondria host segregated cAMP cascades with distinct functional and kinetic signatures.


Blood ◽  
2010 ◽  
Vol 116 (21) ◽  
pp. 1830-1830
Author(s):  
Daniel J. Fernandes ◽  
Yoko Otake ◽  
Victoria Sung ◽  
Robert K Stuart

Abstract Abstract 1830 Amrubicin, a synthetic anthracycline which is approved in Japan for the treatment of lung cancer, is currently being evaluated in a global phase III trial for second line treatment of SCLC. Anthracyclines can exert cytotoxicity through inhibiting topoiosomerase II (Topo II), resulting in the blockade of DNA transcription and replication. Similar to etoposide, Amrubicin also is thought to induce covalent DNA protein complexes (stabilized DNA-topo II complexes) and double strand DNA breaks. In this study, we compared the cytotoxic and DNA damage-inducing effects of amrubicin to two other Topo II inhibitors and evaluated their effects on purified human Topo II as well as on the MV4-11 leukemia cell line. Cellular cytotoxicity assays demonstrated that amrubicin, etoposide and daunorubicin induced MV4-11 leukemia cell death at EC50's of 0.7 μM, 1.8 μM and 0.2 μM, respectively. In addition, DNA damage as represented by H2AX phosphorylation, was observed following drug treatment but was less extensive with amrubicin than with daunorubicin. One level of DNA organization consists of the folding of chromatin into 50–100 kb loops, which are attached at their bases to the nuclear matrix. The matrix attachment regions (MARS) of DNA contain strong Topo II binding sites and mediate the attachment of the chromatin loops to the nuclear matrix. We examined the effects of amrubicin on purified human Topo II, nuclear matrix-bound Topo II, and Topo II activity in MV4-11 leukemia cells in order to gain insights into the mechanism of amrubicin-induced apoptosis. The results were compared to those obtained with the “classical” Topo II-active drugs, etoposide and daunorubicin. Amrubicin, etoposide and daunorubicin inhibited the DNA strand passage reaction of purified human Topo II by stabilizing the formation of Topo II-DNA cleavable complexes (at IC50 values of 20 μM, 750 μM and 4 mM, respectively). In MV4-11 leukemia cells, cleavable complex stabilization by IC50 concentrations of etoposide and daunorubicin resulted in extensive DNA fragmentation from 1–50 kb. In contrast, DNA cleavage by amrubicin was limited to the formation of >50 kb fragments even after 24 hrs of continuous drug exposure. The >50 kb fragments were similar in size to the 50–100 kb chromatin loops that are attached to the nuclear matrix. The hypothesis that amrubicin inhibits selectively nuclear matrix-bound Topo II resulting in detachment of the chromatin loops from the matrix was examined directly by using isolated nuclear matrix preparations from MV4-11 cells. Amrubicin was much more potent in inducing chromatin loop release from isolated nuclear matrix preparations than either etoposide or daunorubicin despite the fact that all three drugs stabilized Topo II-DNA cleavable complex formation. Chromatin loop release by amrubicin was Mg++ dependent and reversible by 4 mM ATP indicating that it was Topo II mediated. Taken together, our results suggest that in MV4-11 cells amrubicin selectively targets nuclear matrix-bound Topo II, while etoposide and daunorubicin are less selective and induce generalized and extensive DNA damage. Exposure to etoposide and daunorubicin is associated with risk of myelodysplastic syndrome and secondary acute myeloid leukemia, which may be related to their ability to induce generalized DNA damage. As a more selective DNA damaging agent, further clinical development of amrubicin is warranted. Disclosures: Fernandes: celgene corp: Consultancy, Research Funding. Sung:celgene corp: Employment.


1994 ◽  
Vol 41 (4) ◽  
pp. 459-466 ◽  
Author(s):  
J Rzeszowska-Wolny ◽  
J Rogoliński

The nuclear matrix bound DNA fraction of rat testis showed enrichment in repetitive sequences found in the 450 bp band after gel electrophoresis of the MspI digested rat DNA. DNA fragments isolated from this band were cloned. DNA of the clone pMspI8 showed homology to some representatives of rat LINE sequence family, and complexed in vitro more efficiently with testes nuclear matrix proteins than with yeast ARS1 sequence containing the matrix association region (MAR) or DNA from an other clone, MspI19. Western blot analysis showed that MspI8 sequence interacts with testes matrix protein of about 120 kDa.


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