scholarly journals Soil bacteria respond to regional edapho-climatic conditions while soil fungi respond to management intensity in grasslands along a European transect

2022 ◽  
Vol 170 ◽  
pp. 104264
Author(s):  
A. Barreiro ◽  
A. Fox ◽  
M. Jongen ◽  
J. Melo ◽  
M. Musyoki ◽  
...  
2020 ◽  
Vol 21 (9) ◽  
Author(s):  
Suryo Wiyono ◽  
Bonjok Istiaji ◽  
Hermanu Triwidodo ◽  
Andika septiana Suryaningsih

Abstract. Wiyono S, Istiaji B, Triwidodo H, Suryaningsih AS. 2020. Abundance of soil microbes, endophytic fungi and blast disease of paddy rice with three pest management practices. Biodiversitas 21: 4234-4239. Rice production in Indonesia faces a potential threat of pests and diseases. Biointensive Integrated Pest Management (Bio IPM) is a new approach based on natural and biological control, which effectively controls pests and diseases. However, the impact of this technology on soil microbes and endophytic fungi is almost unknown. The objective of the study was to investigate the effect of Bio IPM on abundance of soil microbes, endophytic fungi, and blast disease under field conditions. Three pest management types were tested i.e. conventional, reduced pesticides, and Bio IPM. Field experiment was set in four replications in randomized complete block design. Experiments were carried out in two seasons i.e. dry and wet season. Variables assessed during experiment were amount of soil bacteria, soil fungi, phosphate solubilizing bacteria, colonization of total leaf endophytes, colonization of Nigrospora sp., and blast disease severity. The results showed that the abundance of soil bacteria and phosphate solubilizing bacteria were significantly increased with Bio IPM whereas it was not found to be significant in soil fungi. Total endophytic fungi and Nigrospora sp. were found higher in Bio IPM especially in early growth stages. Bio IPM controlled neck blast more effectively than conventional and reduced pesticides, but it did not show any significant effect on leaf blast disease.


1994 ◽  
Vol 72 (1) ◽  
pp. 73-78 ◽  
Author(s):  
Qishui Zhang ◽  
John C. Zak

The role of soil fungi and Bacillus in the Chinese fir (Cunninghamia lanceolata) replant problem was investigated. Several pathogenic fungi isolated were more abundant in replant than in non-replant woodland soil, but the species composition of soil bacteria showed no significant differences. Fumigation of replant soils with methyl bromide significantly increased the growth of Chinese fir compared with nonfumigated soils. Inoculation of steam-sterilized soil with the pathogenic fungi caused significant reduction of growth of Chinese fir seedlings, while amendment with bacteria from the soil had no effect on seedling growth. However, the combination of pathogenic fungi and bacteria greatly reduced plant growth and increased root rot compared with pathogenic fungi or bacteria alone. It is suggested that fungi alone or in combination with bacteria may be important biotic factors in the Chinese fir replant problem. Key words: fungi, bacteria, Chinese fir, replanted soil, seedling growth.


2021 ◽  
Vol 8 (3) ◽  
pp. 2769-2777
Author(s):  
Titin Eka Setianingsih ◽  
Retno Suntari ◽  
Cahyo Prayogo

Utilization of slurry under the combination with mushroom baglog could be used a potential source for replacing nitrogen fertilizer and improve soil fertility. The purpose of this study was to evaluate the different combination and the level of slurry application combining with mushroom baglog on total soil nitrogen and organic contents, total soil bacteria and fungi, along with the improvement of growth and yield of strawberry (Fragaria x ananassa). The experiment used a complete randomized design with five treatments and five replications. The treatments were A1 (100% inorganic fertilizer application as control), A2 (50% composted slurry and mushroom baglog + 50% in-organic fertilizer), A3 (100% composted slurry and mushroom baglog), A4 (150% composted slurry and mushroom baglog), A5 (50% composted slurry and mushroom baglog + 50% in-organic fertilizer), A6 (100% fresh slurry (uncomposted)), and A7 (150% uncomposted fresh slurry). Results showed that the treatments significantly affected total soil nitrogen, total soil bacteria and fungi, along with the growth and yield of strawberry. The A6 treatment which used 100% uncomposted fresh slurry, showed the highest total nitrogen in the soil (0.23%) and total population of bacteria (7.1 log CFU/g) and the greatest number of strawberry stolons. In term of the number of leaves and total soil fungi, the A3 treatment was the greatest, resulted in number of leaves and total soil fungi at 19.7 per plant and 4.8 log cfu/g x 104. However, the best yield was obtained from the A7 treatment (150% of fresh slurry) at 15.1 kg/ha.


2019 ◽  
Vol 95 (9) ◽  
pp. 891-894 ◽  
Author(s):  
Larisa G. Donerian ◽  
M. A. Vodianova ◽  
Zh. E. Tarasova

In the paper there are considered methodological issues for the evaluation of soil biota in terms of oil pollution. Experimental studies have shown that under the exposure of a various levels of oil pollution meeting certain gradations of the state and optimal alteration in microbocenosis in sod-podzolic soils, there is occurred a transformation of structure of the complex of micromycetes and the accumulation of toxic species, hardly typical for podzolic soils - primarily represantatives of the genus Aspergillus (A.niger and A. versicolor), Paecilomyces (P.variotii Bainer), Trichoderma (T.hamatum), the genus of phytopathogens Fusarium (F.oxysporum), dermatophytes of genus Sporothrix (S. schenckii) and dark-colored melanin containing fungi of Dematiaceae family. Besides that there are presented data on the study of microbiocenosis of the urban soil, the urban soil differed from the zone soil, but shaped in similar landscape and climatic conditions, and therefore having a tendency to a similar response from the side of microorganisms inhabiting the soil. Isolated complex of soil microscopic fungi is described by many authors as a complex, characteristic for soils of megalopolises. This allowed authors of this work to suggest that in urban soils the gain in the occurrence of pathogenic species micromycetes also increases against a background of chronic, continuously renewed inflow of petroleum hydrocarbons from various sources of pollution. Because changes in the species composition of micromycetes occurred in accordance with the increasing load of oil, so far as microscopic soil fungi can be recommended as a bioindicator organisms for oil. In the article there is also provided information about the distinctive features of modern DNA identification method of soil microscopic fungi and accepted in our country methodology of isolation of micromycetes with the use of a nutrient Czapek medium.


2016 ◽  
pp. 67-74
Author(s):  
M. V. Patyka ◽  
V. V. Borodai ◽  
E. V. Khomenko ◽  
V. P. Patyka

The use of biological preparations such as Phytotsid and Planryz contributes the increase of the general number of soil bacteria population by 13.0–36.1% in the case of potato variety Scarbnytsya and by 4.5–24.6% for potato variety Oberig compared with control. It also increases the number of saprophyte microflora, which compete with plant pathogens, micromycetes, and causes 1.2–1.8 times reduction in the number of soil fungi – Fusarium and Alternaria. During the application of Rovral Akvaflo the Shannon ecological index of species biodiversity is lower than during the biopreparation use. The decrease of species biodiversity was observed as well as strengthening the dominance of some species (dark pigmentation in fungi).


Author(s):  
Rohini Mattoo

Abstract Soil bacteria contribute effectively to key biogeochemical reactions in the soil rhizosphere. They support plants in the rhizosphere to adapt quickly to changing climatic conditions. Differences in root exudates, trace gas chemistry, chemical compounds and nutrient exchange contribute to the recruitment of diverse microorganisms by plant roots. This review highlights the importance of characterizing novel microorganisms to support sustainable agricultural practices. We discuss about tools for characterizing microbes and agricultural practices that influence microbial diversity, and have reviewed how microorganisms may have important but unidentified roles in climate change. Beneficial microbes could improve the turnover of carbon, nitrogen, phosphorus and other minerals thereby avoiding the use of chemical inputs, which are not only causing serious environmental harm but also pose danger to human and animal health.


mSystems ◽  
2018 ◽  
Vol 3 (5) ◽  
Author(s):  
Joshua Ladau ◽  
Yu Shi ◽  
Xin Jing ◽  
Jin-Sheng He ◽  
Litong Chen ◽  
...  

ABSTRACTSoil bacteria are key to ecosystem function and maintenance of soil fertility. Leveraging associations of current geographic distributions of bacteria with historic climate, we predict that soil bacterial diversity will increase across the majority (∼75%) of the Tibetan Plateau and northern North America if bacterial communities equilibrate with existing climatic conditions. This prediction is possible because the current distributions of soil bacteria have stronger correlations with climate from ∼50 years ago than with current climate. This lag is likely associated with the time it takes for soil properties to adjust to changes in climate. The predicted changes are location specific and differ across bacterial taxa, including some bacteria that are predicted to have reductions in their distributions. These findings illuminate the widespread potential of climate change to influence belowground diversity and the importance of considering bacterial communities when assessing climate impacts on terrestrial ecosystems.IMPORTANCEThere have been many studies highlighting how plant and animal communities lag behind climate change, causing extinction and diversity debts that will slowly be paid as communities equilibrate. By virtue of their short generation times and dispersal abilities, soil bacteria might be expected to respond to climate change quickly and to be effectively in equilibrium with current climatic conditions. We found strong evidence to the contrary in Tibet and North America. These findings could significantly improve understanding of climate impacts on soil microbial communities.


2016 ◽  
Vol 2016 ◽  
pp. 1-10 ◽  
Author(s):  
Yang Lu ◽  
Shuang Rao ◽  
Fei Huang ◽  
Yixia Cai ◽  
Guoping Wang ◽  
...  

Bacterial wilt is a serious soilborne disease of Solanaceae crops which is caused byRalstonia solanacearum. The important role of biochar in enhancing disease resistance in plants has been verified; however, the underlying mechanism remains not fully understood. In this study, two different biochars, made from peanut shell (BC1) and wheat straw (BC2), were added toRalstonia solanacearum-infected soil to explore the interrelation among biochar, tomato bacterial wilt, and soil microbial properties. The results showed that both BC1 and BC2 treatments significantly reduced the disease index of bacterial wilt by 28.6% and 65.7%, respectively. The populations ofR. solanacearumin soil were also significantly decreased by biochar application.Ralstonia solanacearuminfection significantly reduced the densities of soil bacteria and actinomycetes and increased the ratio of soil fungi/bacteria in the soil. By contrast, BC1 and BC2 addition to pathogen-infected soil significantly increased the densities of soil bacteria and actinomycetes but decreased the density of fungi and the ratios of soil fungi/bacteria and fungi/actinomycetes. Biochar treatments also increased soil neutral phosphatase and urease activity. Furthermore, higher metabolic capabilities of microorganisms by biochar application were found at 96 and 144 h in Biolog EcoPlates. These results suggest that both peanut and wheat biochar amendments were effective in inhibiting tomato bacterial wilt caused byR. solanacearum. The results suggest a relationship between the disease resistance of the plants and the changes in soil microbial population densities and activity.


2017 ◽  
Author(s):  
Joshua Ladau ◽  
Yu Shi ◽  
Xin Jing ◽  
Jin-Sheng He ◽  
Litong Chen ◽  
...  

ABSTRACTSoil bacteria are key to ecosystem function and maintenance of soil fertility. Leveraging associations of current geographic distributions of bacteria with historic climate, we predict that soil bacterial diversity will increase across the majority (~75%) of the Tibetan Plateau and northern North America if bacterial communities equilibrate with existing climatic conditions. This prediction is possible because the current distributions of soil bacteria have stronger correlations with climate from ~50 years ago than with current climate. This lag is likely associated with the time it takes for soil properties to adjust to changes in climate. The predicted changes are location specific and differ across bacterial taxa, including some bacteria that are predicted to have reductions in their distributions. These findings demonstrate the widespread influence that climate change will have on belowground diversity and highlight the importance of considering bacterial communities when assessing climate impacts on terrestrial ecosystems.IMPORTANCEThere have been many studies highlighting how plant and animal communities lag behind climate change, causing extinction and diversity debts that will slowly be paid as communities equilibrate. By virtue of their short generation times and dispersal abilities, soil bacteria might be expected to respond to climate change quickly and to be effectively in equilibrium with current climatic conditions. We found strong evidence to the contrary in Tibet and North America. These findings could significantly improve understanding of climate impacts on soil microbial communities.


2019 ◽  
Author(s):  
Franziska M. Willems ◽  
J.F. Scheepens ◽  
Christian Ammer ◽  
Svenja Block ◽  
Anna Bucharova ◽  
...  

AbstractMany organisms respond to anthropogenic environmental change through shifts in their phenology. In plants, flowering is largely driven by temperature, and therefore affected by climate change. However, on smaller scales climatic conditions are also influenced by other factors, including habitat structure. A group of plants with a particularly distinct phenology are the understorey herbs in temperate forests. In these forests, management alters tree species composition and stand structure and, as a consequence, light conditions and microclimate. Forest management should thus also affect the phenology of understorey herbs. To test this, we recorded the flowering phenology of 20 early-flowering herbs on 100 forest plots varying in management intensity, from near-natural to intensely managed forests, in Central and Southern Germany. We found that in forest stands with a high management intensity the plants flowered on average about two weeks later than in unmanaged forests. This was largely because management also affected microclimate (e.g. spring temperatures of 5.9 °C in managed coniferous, 6.7 in managed deciduous and 7.0 °C in unmanaged deciduous plots), which in turn affected phenology, with plants flowering later on colder and moister forest stands (+4.5 days per −1°C and 2.7 days per 10 % humidity increase). Among forest characteristics, the main tree species as well as the age, overall crown projection area, structural complexity and spatial distribution of trees had the greatest influence on microclimate. Our study demonstrates that forest management alters plant phenology, with potential far-reaching consequences for the ecology and evolution of understorey communities. More generally, our study suggests that besides climate change other drivers of environmental change, too, can influence the phenology of organisms.


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